HEADER DEHYDRATASE 01-OCT-99 1QMK OBSLTE 23-OCT-00 1QMK 1QNV TITLE YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE LEAD (PB) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-AMINOLAEVULINIC ACID DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALADH, PORPHOBILINOGEN SYNTHASE; COMPND 5 EC: 4.2.1.24; COMPND 6 OTHER_DETAILS: PB ACETATE CO-CRYSTAL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 STRAIN: NS1(JM109/PNS1); SOURCE 5 PLASMID: PNS1 KEYWDS DEHYDRATASE, ALDOLASE, TIM BARREL, TETRAPYRROLE SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR P.T.ERSKINE,N.SENIOR,M.J.WARREN,S.P.WOOD,J.B.COOPER REVDAT 2 24-OCT-00 1QMK 1 OBSLTE REVDAT 1 06-OCT-00 1QMK 0 JRNL AUTH P.T.ERSKINE,E.M.H.DUKE,I.J.TICKLE,N.M.SENIOR, JRNL AUTH 2 M.J.WARREN,J.B.COOPER JRNL TITL MAD ANALYSES OF YEAST 5-AMINOLAEVULINIC ACID JRNL TITL 2 DEHYDRATASE. THEIR USE IN STRUCTURE DETERMINATION JRNL TITL 3 AND IN DEFINING THE METAL BINDING SITES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 421 2000 JRNL REFN ASTM ABCRE6 DK ISSN 0907-4449 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCP4 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 14951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-FACTOR REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.290 REMARK 3 FREE R VALUE : 0.410 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 14.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.006 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.020 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.018 ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.017 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.010 ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.030 ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QMK COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 3-OCT-1999. REMARK 100 THE EBI ID CODE IS EBI-4162. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-1995 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 BEAMLINE PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.875 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA/AGROVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 14.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 37.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 1AW5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 1/2+X,1/2+Y,1/2+Z REMARK 290 10555 1/2-X,1/2-Y,1/2+Z REMARK 290 11555 1/2-Y,1/2+X,1/2+Z REMARK 290 12555 1/2+Y,1/2-X,1/2+Z REMARK 290 13555 1/2-X,1/2+Y,1/2-Z REMARK 290 14555 1/2+X,1/2-Y,1/2-Z REMARK 290 15555 1/2+Y,1/2+X,1/2-Z REMARK 290 16555 1/2-Y,1/2-X,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.20000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.25000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 51.20000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 85.25000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.20000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 85.25000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 51.20000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 85.25000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.20000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 85.25000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.20000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 85.25000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 51.20000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 85.25000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.20000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 220 REMARK 465 ASP A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 CYS A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 PRO A 227 REMARK 465 SER A 228 REMARK 465 ASN A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 ARG A 232 REMARK 465 LYS A 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 60 CG CD1 CD2 REMARK 470 PHE A 219 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O HOH Z 550 O HOH Z 692 1.74 REMARK 500 O HOH Z 699 O HOH Z 757 1.76 REMARK 500 O HOH Z 602 O HOH Z 777 1.83 REMARK 500 O HOH Z 557 O HOH Z 629 1.96 REMARK 500 O HOH Z 615 O HOH Z 904 2.01 REMARK 500 O HOH Z 575 O HOH Z 625 2.11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH Z 677 O HOH Z 677 16554 1.09 REMARK 500 O HOH Z 732 O HOH Z 732 5555 1.52 REMARK 500 O HOH Z 833 O HOH Z 882 5555 2.02 REMARK 500 O THR A 12 NH2 ARG A 191 5555 2.07 REMARK 500 O HOH Z 544 O HOH Z 725 5555 2.07 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 49 CA ASP A 49 CB -0.064 REMARK 500 THR A 151 N THR A 151 CA -0.057 REMARK 500 PRO A 238 CB PRO A 238 CG -0.054 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 59 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 65 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU A 146 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 THR A 151 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 TYR A 235 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU A 341 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH Z 504 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH Z 515 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH Z 516 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH Z 518 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH Z 525 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH Z 526 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH Z 544 DISTANCE = 8.29 ANGSTROMS REMARK 525 HOH Z 586 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH Z 590 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH Z 592 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH Z 593 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH Z 607 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH Z 610 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH Z 621 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH Z 626 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH Z 651 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH Z 652 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH Z 654 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH Z 658 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH Z 668 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH Z 698 DISTANCE = 10.46 ANGSTROMS REMARK 525 HOH Z 699 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH Z 708 DISTANCE = 10.80 ANGSTROMS REMARK 525 HOH Z 711 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH Z 715 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH Z 721 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH Z 725 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH Z 729 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH Z 731 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH Z 735 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH Z 736 DISTANCE = 11.53 ANGSTROMS REMARK 525 HOH Z 737 DISTANCE = 10.06 ANGSTROMS REMARK 525 HOH Z 739 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH Z 741 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH Z 742 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH Z 750 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH Z 754 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH Z 759 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH Z 760 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH Z 766 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH Z 768 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH Z 771 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH Z 775 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH Z 776 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH Z 784 DISTANCE = 10.57 ANGSTROMS REMARK 525 HOH Z 785 DISTANCE = 13.00 ANGSTROMS REMARK 525 HOH Z 786 DISTANCE = 11.58 ANGSTROMS REMARK 525 HOH Z 787 DISTANCE = 9.81 ANGSTROMS REMARK 525 HOH Z 790 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH Z 791 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH Z 792 DISTANCE = 10.20 ANGSTROMS REMARK 525 HOH Z 793 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH Z 796 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH Z 799 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH Z 806 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH Z 807 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH Z 810 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH Z 812 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH Z 816 DISTANCE = 8.77 ANGSTROMS REMARK 525 HOH Z 817 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH Z 818 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH Z 819 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH Z 824 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH Z 825 DISTANCE = 11.20 ANGSTROMS REMARK 525 HOH Z 829 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH Z 830 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH Z 832 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH Z 833 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH Z 834 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH Z 839 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH Z 841 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH Z 844 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH Z 845 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH Z 846 DISTANCE = 12.92 ANGSTROMS REMARK 525 HOH Z 850 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH Z 851 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH Z 853 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH Z 854 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH Z 857 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH Z 859 DISTANCE = 8.59 ANGSTROMS REMARK 525 HOH Z 860 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH Z 865 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH Z 866 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH Z 868 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH Z 874 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH Z 882 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH Z 883 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH Z 886 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH Z 889 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH Z 900 DISTANCE = 8.15 ANGSTROMS REMARK 525 HOH Z 901 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH Z 902 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH Z 903 DISTANCE = 6.61 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 METAL ION SUBSTITUTING PB FOR COFACTOR ZN REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 SITE_DESCRIPTION: CATALYTIC RESIDUES REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AW5 RELATED DB: PDB REMARK 900 5-AMINOLEVULINATE DEHYDRATASE FROM SACCHAROMYCES REMARK 900 CEREVISIAE REMARK 900 RELATED ID: 1QML RELATED DB: PDB REMARK 900 HG COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE REMARK 900 RELATED ID: 1QNV RELATED DB: PDB REMARK 900 YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE LEAD (PB) REMARK 900 COMPLEX REMARK 900 RELATED ID: 1YLV RELATED DB: PDB REMARK 900 SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID REMARK 900 DEHYDRATASE WITH LAEVULINIC ACID DBREF 1QMK A 1 342 UNP P05373 HEM2_YEAST 1 342 SEQRES 1 A 342 MET HIS THR ALA GLU PHE LEU GLU THR GLU PRO THR GLU SEQRES 2 A 342 ILE SER SER VAL LEU ALA GLY GLY TYR ASN HIS PRO LEU SEQRES 3 A 342 LEU ARG GLN TRP GLN SER GLU ARG GLN LEU THR LYS ASN SEQRES 4 A 342 MET LEU ILE PHE PRO LEU PHE ILE SER ASP ASN PRO ASP SEQRES 5 A 342 ASP PHE THR GLU ILE ASP SER LEU PRO ASN ILE ASN ARG SEQRES 6 A 342 ILE GLY VAL ASN ARG LEU LYS ASP TYR LEU LYS PRO LEU SEQRES 7 A 342 VAL ALA LYS GLY LEU ARG SER VAL ILE LEU PHE GLY VAL SEQRES 8 A 342 PRO LEU ILE PRO GLY THR LYS ASP PRO VAL GLY THR ALA SEQRES 9 A 342 ALA ASP ASP PRO ALA GLY PRO VAL ILE GLN GLY ILE LYS SEQRES 10 A 342 PHE ILE ARG GLU TYR PHE PRO GLU LEU TYR ILE ILE CYS SEQRES 11 A 342 ASP VAL CYS LEU CYS GLU TYR THR SER HIS GLY HIS CYS SEQRES 12 A 342 GLY VAL LEU TYR ASP ASP GLY THR ILE ASN ARG GLU ARG SEQRES 13 A 342 SER VAL SER ARG LEU ALA ALA VAL ALA VAL ASN TYR ALA SEQRES 14 A 342 LYS ALA GLY ALA HIS CYS VAL ALA PRO SER ASP MET ILE SEQRES 15 A 342 ASP GLY ARG ILE ARG ASP ILE LYS ARG GLY LEU ILE ASN SEQRES 16 A 342 ALA ASN LEU ALA HIS LYS THR PHE VAL LEU SER TYR ALA SEQRES 17 A 342 ALA LYS PHE SER GLY ASN LEU TYR GLY PRO PHE ARG ASP SEQRES 18 A 342 ALA ALA CYS SER ALA PRO SER ASN GLY ASP ARG LYS CYS SEQRES 19 A 342 TYR GLN LEU PRO PRO ALA GLY ARG GLY LEU ALA ARG ARG SEQRES 20 A 342 ALA LEU GLU ARG ASP MET SER GLU GLY ALA ASP GLY ILE SEQRES 21 A 342 ILE VAL LYS PRO SER THR PHE TYR LEU ASP ILE MET ARG SEQRES 22 A 342 ASP ALA SER GLU ILE CYS LYS ASP LEU PRO ILE CYS ALA SEQRES 23 A 342 TYR HIS VAL SER GLY GLU TYR ALA MET LEU HIS ALA ALA SEQRES 24 A 342 ALA GLU LYS GLY VAL VAL ASP LEU LYS THR ILE ALA PHE SEQRES 25 A 342 GLU SER HIS GLN GLY PHE LEU ARG ALA GLY ALA ARG LEU SEQRES 26 A 342 ILE ILE THR TYR LEU ALA PRO GLU PHE LEU ASP TRP LEU SEQRES 27 A 342 ASP GLU GLU ASN HET PB A 400 1 HET PB A 401 1 HETNAM PB LEAD (II) ION FORMUL 2 PB 2(PB 2+) FORMUL 4 HOH *370(H2 O1) HELIX 1 1 GLU A 13 VAL A 17 5 5 HELIX 2 2 LEU A 18 TYR A 22 5 5 HELIX 3 3 HIS A 24 GLN A 29 5 6 HELIX 4 4 THR A 37 ASN A 39 5 3 HELIX 5 5 ARG A 70 LYS A 81 1 12 HELIX 6 6 GLY A 102 ASP A 107 5 6 HELIX 7 7 VAL A 112 PHE A 123 1 12 HELIX 8 8 LEU A 134 TYR A 137 5 4 HELIX 9 9 ASN A 153 ALA A 171 1 19 HELIX 10 10 GLY A 184 ALA A 196 1 13 HELIX 11 11 GLY A 241 GLU A 255 1 15 HELIX 12 12 SER A 265 PHE A 267 5 3 HELIX 13 13 TYR A 268 CYS A 279 1 12 HELIX 14 14 VAL A 289 LYS A 302 1 14 HELIX 15 15 ASP A 306 GLY A 322 1 17 HELIX 16 16 LEU A 330 LEU A 338 1 9 SHEET 1 A11 PHE A 54 GLU A 56 0 SHEET 2 A11 ASN A 64 GLY A 67 -1 O ARG A 65 N THR A 55 SHEET 3 A11 LEU A 41 SER A 48 1 O PHE A 46 N ILE A 66 SHEET 4 A11 LEU A 325 ILE A 327 1 O ILE A 326 N ILE A 42 SHEET 5 A11 ILE A 284 TYR A 287 1 O ALA A 286 N ILE A 327 SHEET 6 A11 GLY A 259 LYS A 263 1 O ILE A 260 N CYS A 285 SHEET 7 A11 PHE A 203 LYS A 210 1 O SER A 206 N ILE A 261 SHEET 8 A11 CYS A 175 PRO A 178 1 O VAL A 176 N LEU A 205 SHEET 9 A11 TYR A 127 VAL A 132 1 O ILE A 128 N CYS A 175 SHEET 10 A11 SER A 85 VAL A 91 1 O VAL A 86 N ILE A 129 SHEET 11 A11 LEU A 41 SER A 48 1 O PHE A 43 N ILE A 87 SHEET 1 A111 PHE A 54 GLU A 56 0 SHEET 2 A111 ASN A 64 GLY A 67 -1 O ARG A 65 N THR A 55 SHEET 3 A111 LEU A 41 SER A 48 1 O PHE A 46 N ILE A 66 SHEET 4 A111 SER A 85 VAL A 91 1 O SER A 85 N PHE A 43 SHEET 5 A111 TYR A 127 VAL A 132 1 O TYR A 127 N VAL A 86 SHEET 6 A111 CYS A 175 PRO A 178 1 O CYS A 175 N CYS A 130 SHEET 7 A111 PHE A 203 LYS A 210 1 O PHE A 203 N VAL A 176 SHEET 8 A111 GLY A 259 LYS A 263 1 O GLY A 259 N SER A 206 SHEET 9 A111 ILE A 284 TYR A 287 1 O CYS A 285 N VAL A 262 SHEET 10 A111 LEU A 325 ILE A 327 1 O LEU A 325 N ALA A 286 SHEET 11 A111 LEU A 41 SER A 48 1 N ILE A 42 O ILE A 326 LINK PB PB A 400 SG CYS A 133 LINK PB PB A 400 SG CYS A 135 LINK PB PB A 400 SG CYS A 143 LINK PB PB A 400 O SER A 179 LINK PB PB A 401 O GLY A 141 LINK PB PB A 401 SG CYS A 143 CISPEP 1 LYS A 263 PRO A 264 0 -0.31 SITE 1 CAT 3 LYS A 210 LYS A 263 PB A 400 CRYST1 102.400 102.400 170.500 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005865 0.00000