HEADER REPLICATION 04-OCT-99 1QMP TITLE PHOSPHORYLATED ASPARTATE IN THE CRYSTAL STRUCTURE OF THE SPORULATION TITLE 2 RESPONSE REGULATOR, SPO0A COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAGE 0 SPORULATION PROTEIN A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RECEIVER DOMAIN; COMPND 5 SYNONYM: SPO0A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATED ASPARTIC ACID RESIDUE 55 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_COMMON: BACILLUS STEAROTHERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 1422; SOURCE 5 GENE: SPO0A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS REPLICATION, RESPONSE REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.J.LEWIS,J.A.BRANNIGAN,K.MUCHOVA,I.BARAK,A.J.WILKINSON REVDAT 8 24-JUL-19 1QMP 1 REMARK REVDAT 7 10-JUL-19 1QMP 1 REMARK REVDAT 6 06-JUN-18 1QMP 1 COMPND SOURCE JRNL REMARK REVDAT 6 2 1 DBREF REVDAT 5 12-JUL-17 1QMP 1 REVDAT 4 24-MAR-09 1QMP 1 HEADER KEYWDS REMARK HETATM REVDAT 4 2 1 MASTER REVDAT 3 24-FEB-09 1QMP 1 VERSN REVDAT 2 01-AUG-03 1QMP 1 REMARK CRYST1 HETATM REVDAT 1 14-NOV-99 1QMP 0 JRNL AUTH R.J.LEWIS,J.A.BRANNIGAN,K.MUCHOVA,I.BARAK,A.J.WILKINSON JRNL TITL PHOSPHORYLATED ASPARTATE IN THE STRUCTURE OF A RESPONSE JRNL TITL 2 REGULATOR PROTEIN. JRNL REF J. MOL. BIOL. V. 294 9 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10556024 JRNL DOI 10.1006/JMBI.1999.3261 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3940 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.720 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.011 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.030 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.032 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.022 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.122 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.186 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.270 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.121 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.000 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 14.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 19.900; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.060 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.780 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.530 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.960 ; 8.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1290002934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-97 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.838 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: N-SPO0A IN DIFFERENT CRYSTAL FORM (YET TO BE REMARK 200 DEPOSITED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 225 MM CACL2, 100 MM MOPS, PH 6.5, PH REMARK 280 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.59850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.14850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.42950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.14850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.59850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.42950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 124 REMARK 465 ARG A 129 REMARK 465 LYS A 130 REMARK 465 MET B 1 REMARK 465 GLY B 73 REMARK 465 PHE B 74 REMARK 465 GLU B 75 REMARK 465 HIS B 76 REMARK 465 LYS B 123 REMARK 465 THR B 124 REMARK 465 ARG B 129 REMARK 465 LYS B 130 REMARK 465 MET C 1 REMARK 465 THR C 124 REMARK 465 ARG C 129 REMARK 465 LYS C 130 REMARK 465 MET D 1 REMARK 465 PHE D 74 REMARK 465 GLU D 75 REMARK 465 ARG D 129 REMARK 465 LYS D 130 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 4 CE NZ REMARK 480 GLU A 13 CD OE1 OE2 REMARK 480 GLU A 46 CG CD OE1 OE2 REMARK 480 ARG A 48 CD NE CZ NH1 NH2 REMARK 480 GLU B 13 CG CD OE1 OE2 REMARK 480 LEU B 17 CG CD1 CD2 REMARK 480 GLU B 20 CG CD OE1 OE2 REMARK 480 GLN B 38 CD OE1 NE2 REMARK 480 GLN B 42 CG CD OE1 NE2 REMARK 480 GLU B 45 CD OE1 OE2 REMARK 480 LYS B 47 NZ REMARK 480 GLN B 77 OE1 NE2 REMARK 480 GLU B 111 CG CD OE1 OE2 REMARK 480 GLN B 119 CD OE1 NE2 REMARK 480 LYS C 4 CD CE NZ REMARK 480 GLU C 13 CG CD OE1 OE2 REMARK 480 GLU C 20 CD OE1 OE2 REMARK 480 ARG C 48 CD NE CZ NH1 NH2 REMARK 480 GLU C 111 CD OE1 OE2 REMARK 480 ARG D 12 CZ NH1 NH2 REMARK 480 GLU D 13 CG CD OE1 OE2 REMARK 480 GLU D 20 CD OE1 OE2 REMARK 480 GLN D 42 CD OE1 NE2 REMARK 480 GLU D 45 CD OE1 OE2 REMARK 480 ARG D 48 CG CD NE CZ NH1 NH2 REMARK 480 GLN D 77 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 119 O HOH B 401 2.13 REMARK 500 OE2 GLU C 111 O HOH C 401 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 20 CG GLU D 20 CD 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 62 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 10 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 LEU B 105 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP C 10 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 12 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 GLU C 97 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 VAL C 128 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP D 10 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 60 -53.13 72.44 REMARK 500 LEU B 61 117.93 83.52 REMARK 500 HIS C 60 75.23 39.48 REMARK 500 LEU C 61 108.36 84.75 REMARK 500 LEU D 61 116.54 88.18 REMARK 500 THR D 125 164.09 90.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 PHD A 55 OD2 79.3 REMARK 620 3 PHD A 55 OP2 155.7 76.5 REMARK 620 4 ILE A 57 O 86.3 78.6 86.6 REMARK 620 5 HOH A 413 O 76.8 147.0 124.1 77.6 REMARK 620 6 HOH A 404 O 80.7 77.8 96.5 154.8 119.6 REMARK 620 7 HOH B 425 O 123.5 141.4 78.5 128.6 71.5 76.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 PHD B 55 OD2 81.4 REMARK 620 3 PHD B 55 OP2 155.5 74.2 REMARK 620 4 ILE B 57 O 82.6 73.4 88.7 REMARK 620 5 HOH B 403 O 85.3 80.9 92.5 152.9 REMARK 620 6 HOH B 419 O 76.3 147.2 124.7 80.0 120.4 REMARK 620 7 HOH C 437 O 123.2 142.1 79.1 132.7 73.9 70.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD1 REMARK 620 2 PHD C 55 OD2 83.4 REMARK 620 3 PHD C 55 OP2 156.8 73.5 REMARK 620 4 ILE C 57 O 87.3 77.4 84.9 REMARK 620 5 HOH D 428 O 78.0 150.7 121.6 79.2 REMARK 620 6 HOH D 437 O 117.0 140.4 83.8 133.1 68.9 REMARK 620 7 HOH D 415 O 82.2 77.2 95.2 153.4 121.9 73.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 PHD D 55 OD2 82.4 REMARK 620 3 PHD D 55 OP2 158.2 75.8 REMARK 620 4 ILE D 57 O 88.8 78.9 87.6 REMARK 620 5 HOH D 402 O 80.7 75.6 93.3 153.5 REMARK 620 6 HOH D 412 O 76.7 147.4 123.0 75.9 124.2 REMARK 620 7 HOH A 457 O 120.6 138.0 77.0 131.1 74.5 74.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA W 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA Y 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA Z 301 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEE DNA SEQUENCE ENTRY EMBL SBAJ2297 DBREF 1QMP A 1 130 UNP P52934 SP0A_GEOSE 1 130 DBREF 1QMP B 1 130 UNP P52934 SP0A_GEOSE 1 130 DBREF 1QMP C 1 130 UNP P52934 SP0A_GEOSE 1 130 DBREF 1QMP D 1 130 UNP P52934 SP0A_GEOSE 1 130 SEQRES 1 A 130 MET SER ILE LYS VAL CYS ILE ALA ASP ASP ASN ARG GLU SEQRES 2 A 130 LEU VAL SER LEU LEU ASP GLU TYR ILE SER SER GLN PRO SEQRES 3 A 130 ASP MET GLU VAL ILE GLY THR ALA TYR ASN GLY GLN ASP SEQRES 4 A 130 CYS LEU GLN MET LEU GLU GLU LYS ARG PRO ASP ILE LEU SEQRES 5 A 130 LEU LEU PHD ILE ILE MET PRO HIS LEU ASP GLY LEU ALA SEQRES 6 A 130 VAL LEU GLU ARG ILE ARG ALA GLY PHE GLU HIS GLN PRO SEQRES 7 A 130 ASN VAL ILE MET LEU THR ALA PHE GLY GLN GLU ASP VAL SEQRES 8 A 130 THR LYS LYS ALA VAL GLU LEU GLY ALA SER TYR PHE ILE SEQRES 9 A 130 LEU LYS PRO PHE ASP MET GLU ASN LEU ALA HIS HIS ILE SEQRES 10 A 130 ARG GLN VAL TYR GLY LYS THR THR PRO VAL VAL ARG LYS SEQRES 1 B 130 MET SER ILE LYS VAL CYS ILE ALA ASP ASP ASN ARG GLU SEQRES 2 B 130 LEU VAL SER LEU LEU ASP GLU TYR ILE SER SER GLN PRO SEQRES 3 B 130 ASP MET GLU VAL ILE GLY THR ALA TYR ASN GLY GLN ASP SEQRES 4 B 130 CYS LEU GLN MET LEU GLU GLU LYS ARG PRO ASP ILE LEU SEQRES 5 B 130 LEU LEU PHD ILE ILE MET PRO HIS LEU ASP GLY LEU ALA SEQRES 6 B 130 VAL LEU GLU ARG ILE ARG ALA GLY PHE GLU HIS GLN PRO SEQRES 7 B 130 ASN VAL ILE MET LEU THR ALA PHE GLY GLN GLU ASP VAL SEQRES 8 B 130 THR LYS LYS ALA VAL GLU LEU GLY ALA SER TYR PHE ILE SEQRES 9 B 130 LEU LYS PRO PHE ASP MET GLU ASN LEU ALA HIS HIS ILE SEQRES 10 B 130 ARG GLN VAL TYR GLY LYS THR THR PRO VAL VAL ARG LYS SEQRES 1 C 130 MET SER ILE LYS VAL CYS ILE ALA ASP ASP ASN ARG GLU SEQRES 2 C 130 LEU VAL SER LEU LEU ASP GLU TYR ILE SER SER GLN PRO SEQRES 3 C 130 ASP MET GLU VAL ILE GLY THR ALA TYR ASN GLY GLN ASP SEQRES 4 C 130 CYS LEU GLN MET LEU GLU GLU LYS ARG PRO ASP ILE LEU SEQRES 5 C 130 LEU LEU PHD ILE ILE MET PRO HIS LEU ASP GLY LEU ALA SEQRES 6 C 130 VAL LEU GLU ARG ILE ARG ALA GLY PHE GLU HIS GLN PRO SEQRES 7 C 130 ASN VAL ILE MET LEU THR ALA PHE GLY GLN GLU ASP VAL SEQRES 8 C 130 THR LYS LYS ALA VAL GLU LEU GLY ALA SER TYR PHE ILE SEQRES 9 C 130 LEU LYS PRO PHE ASP MET GLU ASN LEU ALA HIS HIS ILE SEQRES 10 C 130 ARG GLN VAL TYR GLY LYS THR THR PRO VAL VAL ARG LYS SEQRES 1 D 130 MET SER ILE LYS VAL CYS ILE ALA ASP ASP ASN ARG GLU SEQRES 2 D 130 LEU VAL SER LEU LEU ASP GLU TYR ILE SER SER GLN PRO SEQRES 3 D 130 ASP MET GLU VAL ILE GLY THR ALA TYR ASN GLY GLN ASP SEQRES 4 D 130 CYS LEU GLN MET LEU GLU GLU LYS ARG PRO ASP ILE LEU SEQRES 5 D 130 LEU LEU PHD ILE ILE MET PRO HIS LEU ASP GLY LEU ALA SEQRES 6 D 130 VAL LEU GLU ARG ILE ARG ALA GLY PHE GLU HIS GLN PRO SEQRES 7 D 130 ASN VAL ILE MET LEU THR ALA PHE GLY GLN GLU ASP VAL SEQRES 8 D 130 THR LYS LYS ALA VAL GLU LEU GLY ALA SER TYR PHE ILE SEQRES 9 D 130 LEU LYS PRO PHE ASP MET GLU ASN LEU ALA HIS HIS ILE SEQRES 10 D 130 ARG GLN VAL TYR GLY LYS THR THR PRO VAL VAL ARG LYS MODRES 1QMP PHD A 55 ASP MODIFIED RESIDUE MODRES 1QMP PHD B 55 ASP MODIFIED RESIDUE MODRES 1QMP PHD C 55 ASP MODIFIED RESIDUE MODRES 1QMP PHD D 55 ASP MODIFIED RESIDUE HET PHD A 55 12 HET PHD B 55 12 HET PHD C 55 12 HET PHD D 55 12 HET CA A 301 1 HET CA B 301 1 HET CA C 301 1 HET CA D 301 1 HETNAM PHD ASPARTYL PHOSPHATE HETNAM CA CALCIUM ION FORMUL 1 PHD 4(C4 H8 N O7 P) FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *385(H2 O) HELIX 1 A1 ASN A 11 SER A 24 1 14 HELIX 2 A2 ASN A 36 LYS A 47 1 12 HELIX 3 A3 ASP A 62 PHE A 74 1 13 HELIX 4 A4 GLN A 88 LEU A 98 1 11 HELIX 5 A5 ASP A 109 GLY A 122 1 14 HELIX 6 B1 ASN B 11 SER B 24 1 14 HELIX 7 B2 ASN B 36 LYS B 47 1 12 HELIX 8 B3 ASP B 62 ALA B 72 1 11 HELIX 9 B4 GLN B 88 LEU B 98 1 11 HELIX 10 B5 ASP B 109 GLY B 122 1 14 HELIX 11 C1 ASN C 11 SER C 24 1 14 HELIX 12 C2 ASN C 36 LYS C 47 1 12 HELIX 13 C3 ASP C 62 PHE C 74 1 13 HELIX 14 C4 GLN C 88 LEU C 98 1 11 HELIX 15 C5 ASP C 109 GLY C 122 1 14 HELIX 16 D1 ASN D 11 SER D 24 1 14 HELIX 17 D2 ASN D 36 LYS D 47 1 12 HELIX 18 D3 ASP D 62 ALA D 72 1 11 HELIX 19 D4 GLN D 88 LEU D 98 1 11 HELIX 20 D5 ASP D 109 GLY D 122 1 14 SHEET 1 AA 5 TYR A 102 LEU A 105 0 SHEET 2 AA 5 ASN A 79 THR A 84 1 N MET A 82 O TYR A 102 SHEET 3 AA 5 ILE A 51 LEU A 54 1 N LEU A 52 O ASN A 79 SHEET 4 AA 5 ILE A 3 ALA A 8 1 N CYS A 6 O ILE A 51 SHEET 5 AA 5 MET A 28 ALA A 34 1 N GLU A 29 O ILE A 3 SHEET 1 BA 5 TYR B 102 LEU B 105 0 SHEET 2 BA 5 ASN B 79 THR B 84 1 N MET B 82 O TYR B 102 SHEET 3 BA 5 ILE B 51 LEU B 54 1 N LEU B 52 O ASN B 79 SHEET 4 BA 5 ILE B 3 ALA B 8 1 N CYS B 6 O ILE B 51 SHEET 5 BA 5 MET B 28 ALA B 34 1 N GLU B 29 O ILE B 3 SHEET 1 CA 5 TYR C 102 LEU C 105 0 SHEET 2 CA 5 ASN C 79 THR C 84 1 N MET C 82 O TYR C 102 SHEET 3 CA 5 ILE C 51 LEU C 54 1 N LEU C 52 O ASN C 79 SHEET 4 CA 5 ILE C 3 ALA C 8 1 N CYS C 6 O ILE C 51 SHEET 5 CA 5 MET C 28 ALA C 34 1 N GLU C 29 O ILE C 3 SHEET 1 DA 5 TYR D 102 LEU D 105 0 SHEET 2 DA 5 ASN D 79 THR D 84 1 N MET D 82 O TYR D 102 SHEET 3 DA 5 ILE D 51 LEU D 54 1 N LEU D 52 O ASN D 79 SHEET 4 DA 5 ILE D 3 ALA D 8 1 N CYS D 6 O ILE D 51 SHEET 5 DA 5 MET D 28 ALA D 34 1 N GLU D 29 O ILE D 3 LINK OD1 ASP A 10 CA CA A 301 1555 1555 2.58 LINK C LEU A 54 N PHD A 55 1555 1555 1.33 LINK C PHD A 55 N ILE A 56 1555 1555 1.32 LINK OD2 PHD A 55 CA CA A 301 1555 1555 2.61 LINK OP2 PHD A 55 CA CA A 301 1555 1555 2.39 LINK O ILE A 57 CA CA A 301 1555 1555 2.48 LINK OD1 ASP B 10 CA CA B 301 1555 1555 2.60 LINK C LEU B 54 N PHD B 55 1555 1555 1.33 LINK C PHD B 55 N ILE B 56 1555 1555 1.34 LINK OD2 PHD B 55 CA CA B 301 1555 1555 2.60 LINK OP2 PHD B 55 CA CA B 301 1555 1555 2.44 LINK O ILE B 57 CA CA B 301 1555 1555 2.54 LINK OD1 ASP C 10 CA CA C 301 1555 1555 2.54 LINK C LEU C 54 N PHD C 55 1555 1555 1.33 LINK C PHD C 55 N ILE C 56 1555 1555 1.34 LINK OD2 PHD C 55 CA CA C 301 1555 1555 2.57 LINK OP2 PHD C 55 CA CA C 301 1555 1555 2.39 LINK O ILE C 57 CA CA C 301 1555 1555 2.48 LINK OD1 ASP D 10 CA CA D 301 1555 1555 2.58 LINK C LEU D 54 N PHD D 55 1555 1555 1.33 LINK C PHD D 55 N ILE D 56 1555 1555 1.33 LINK OD2 PHD D 55 CA CA D 301 1555 1555 2.62 LINK OP2 PHD D 55 CA CA D 301 1555 1555 2.40 LINK O ILE D 57 CA CA D 301 1555 1555 2.52 LINK CA CA A 301 O HOH A 413 1555 1555 2.60 LINK CA CA A 301 O HOH A 404 1555 1555 2.58 LINK CA CA B 301 O HOH B 403 1555 1555 2.60 LINK CA CA B 301 O HOH B 419 1555 1555 2.63 LINK CA CA D 301 O HOH D 402 1555 1555 2.61 LINK CA CA D 301 O HOH D 412 1555 1555 2.63 LINK CA CA A 301 O HOH B 425 1555 1554 2.63 LINK CA CA B 301 O HOH C 437 1555 2565 2.70 LINK CA CA C 301 O HOH D 428 1555 2564 2.57 LINK CA CA C 301 O HOH D 437 1555 2564 2.68 LINK CA CA C 301 O HOH D 415 1555 2564 2.55 LINK CA CA D 301 O HOH A 457 1555 2565 2.67 CISPEP 1 LYS A 106 PRO A 107 0 2.78 CISPEP 2 LYS B 106 PRO B 107 0 3.11 CISPEP 3 LYS C 106 PRO C 107 0 0.74 CISPEP 4 LYS D 106 PRO D 107 0 1.02 SITE 1 AC1 6 ASP A 10 PHD A 55 ILE A 57 HOH A 404 SITE 2 AC1 6 HOH A 413 HOH B 425 SITE 1 AC2 6 ASP B 10 PHD B 55 ILE B 57 HOH B 403 SITE 2 AC2 6 HOH B 419 HOH C 437 SITE 1 AC3 6 ASP C 10 PHD C 55 ILE C 57 HOH D 437 SITE 2 AC3 6 HOH D 428 HOH D 415 SITE 1 AC4 6 HOH A 457 ASP D 10 PHD D 55 ILE D 57 SITE 2 AC4 6 HOH D 402 HOH D 412 CRYST1 69.197 72.859 114.297 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008749 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.660800 -0.749600 -0.038400 60.49000 1 MTRIX2 2 0.750000 -0.661400 0.004300 46.66000 1 MTRIX3 2 -0.028700 -0.025900 0.999200 -98.54000 1 MTRIX1 3 0.049400 -0.998800 -0.006200 53.14000 1 MTRIX2 3 0.998700 0.049300 0.014300 16.94000 1 MTRIX3 3 -0.014000 -0.006900 0.999900 -28.17000 1 MTRIX1 4 0.719300 -0.693700 -0.037300 33.35000 1 MTRIX2 4 0.694300 0.719700 0.003000 -2.24200 1 MTRIX3 4 0.024700 -0.028100 0.999300 -70.78000 1