data_1QMS # _entry.id 1QMS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1QMS PDBE EBI-1194 WWPDB D_1290001194 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QMS _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 1999-10-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bifulco, G.' 1 ? 'Galeone, A.' 2 ? 'Nicolaou, K.C.' 3 ? 'Chazin, W.J.' 4 ? 'Gomez-Paloma, L.' 5 ? # _citation.id primary _citation.title ;Solution Structure of the Complex between the Head-to-Tail Dimer of Calicheamicin Gamma-1-I Oligosaccharide and a DNA Duplex Containing D(ACCT) and D(TCCT) High-Affinity Binding Sites ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 120 _citation.page_first 7183 _citation.page_last 7191 _citation.year 1998 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1021/ja973910y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bifulco, G.' 1 ? primary 'Galeone, A.' 2 ? primary 'Nicolaou, K.C.' 3 ? primary 'Chazin, W.J.' 4 ? primary 'Gomez-Paloma, L.' 5 ? # _cell.entry_id 1QMS _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QMS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*AP*CP*CP*TP*TP*CP*CP*TP*GP*C)-3') ; 3574.330 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*AP*GP*GP*AP*AP*GP*GP*TP*GP*C)-3') ; 3752.454 1 ? ? ? 'COMPLEXED WITH CALICHEAMICIN HEAD-TO-TAIL DIMER' 3 non-polymer man 'CALICHEAMICIN GAMMA-1-OLIGOSACCHARIDE' 976.864 2 ? ? ? ? 4 non-polymer syn N-BUTANE 58.122 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DC)(DC)(DT)(DT)(DC)(DC)(DT)(DG)(DC)' GCACCTTCCTGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DG)(DG)(DA)(DA)(DG)(DG)(DT)(DG)(DC)' GCAGGAAGGTGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DA n 1 4 DC n 1 5 DC n 1 6 DT n 1 7 DT n 1 8 DC n 1 9 DC n 1 10 DT n 1 11 DG n 1 12 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1QMS 1 ? ? 1QMS ? 2 PDB 1QMS 2 ? ? 1QMS ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QMS A 1 ? 12 ? 1QMS 1 ? 12 ? 1 12 2 2 1QMS B 1 ? 2 ? 1QMS 13 ? 14 ? 13 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CCI non-polymer . 'CALICHEAMICIN GAMMA-1-OLIGOSACCHARIDE' ? 'C38 H61 I N2 O17 S' 976.864 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NBU non-polymer . N-BUTANE ? 'C4 H10' 58.122 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 4 1 2Q 1 5 1 PE-COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '0.01 M SODIUM PHOSPHATE BUFFER, 0.01 M SODIUM CHLORIDE, O.0001 M EDTA' _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5% D2O/95% H2O' _pdbx_nmr_sample_details.solvent_system ? _pdbx_nmr_sample_details.label ? _pdbx_nmr_sample_details.type ? _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1QMS _pdbx_nmr_refine.method 'RESTRAINED MOLECULAR DYNAMICS' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1QMS _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR 1H NMR DATA' # _pdbx_nmr_ensemble.entry_id 1QMS _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 9 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST RESTRAINT VIOLATION' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement Amber 4.1 'PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, SEIBEL,SINGH,WEINER,KOLLMAN' 1 'structure solution' Amber 4.1 ? 2 # _exptl.entry_id 1QMS _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1QMS _struct.title 'Head-to-Tail Dimer of Calicheamicin gamma-1-I Oligosaccharide Bound to DNA Duplex, NMR, 9 Structures' _struct.pdbx_descriptor ;5'-D(*GP*CP*AP*CP*CP*TP*TP*CP*CP*TP*GP*C)-3', N-BUTANE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QMS _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;DEOXYRIBONUCLEIC ACID/CALICHEAMICIN, CALICHEAMICIN, HEAD-TO-TAIL DIMER, DNA, MINOR GROOVE BINDING, ANTITUMOR AGENT, LIGAND-DNA COMPLEX, DEOXYRIBONUCLEIC ACID ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale none ? C CCI . O4D ? ? ? 1_555 D NBU . C1 ? ? B CCI 25 B NBU 26 1_555 ? ? ? ? ? ? ? 1.420 ? covale2 covale none ? E CCI . CAN ? ? ? 1_555 D NBU . C4 ? ? B CCI 27 B NBU 26 1_555 ? ? ? ? ? ? ? 1.532 ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 1 B DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 5 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 6 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 6 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 8 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'Binding site for residues CCI B 25 and NBU B 26' AC2 Software ? ? ? ? 10 'Binding site for residues NBU B 26 and CCI B 27' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 4 ? DC A 4 . ? 1_555 ? 2 AC1 8 DC A 5 ? DC A 5 . ? 1_555 ? 3 AC1 8 DT A 6 ? DT A 6 . ? 1_555 ? 4 AC1 8 DG B 9 ? DG B 21 . ? 1_555 ? 5 AC1 8 DT B 10 ? DT B 22 . ? 1_555 ? 6 AC1 8 DG B 11 ? DG B 23 . ? 1_555 ? 7 AC1 8 DC B 12 ? DC B 24 . ? 1_555 ? 8 AC1 8 CCI E . ? CCI B 27 . ? 1_555 ? 9 AC2 10 DC A 8 ? DC A 8 . ? 1_555 ? 10 AC2 10 DC A 9 ? DC A 9 . ? 1_555 ? 11 AC2 10 DT A 10 ? DT A 10 . ? 1_555 ? 12 AC2 10 DG A 11 ? DG A 11 . ? 1_555 ? 13 AC2 10 DG B 4 ? DG B 16 . ? 1_555 ? 14 AC2 10 DG B 5 ? DG B 17 . ? 1_555 ? 15 AC2 10 DA B 6 ? DA B 18 . ? 1_555 ? 16 AC2 10 DA B 7 ? DA B 19 . ? 1_555 ? 17 AC2 10 DG B 8 ? DG B 20 . ? 1_555 ? 18 AC2 10 CCI C . ? CCI B 25 . ? 1_555 ? # _database_PDB_matrix.entry_id 1QMS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QMS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H I N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 13 13 DG DG B . n B 2 2 DC 2 14 14 DC DC B . n B 2 3 DA 3 15 15 DA DA B . n B 2 4 DG 4 16 16 DG DG B . n B 2 5 DG 5 17 17 DG DG B . n B 2 6 DA 6 18 18 DA DA B . n B 2 7 DA 7 19 19 DA DA B . n B 2 8 DG 8 20 20 DG DG B . n B 2 9 DG 9 21 21 DG DG B . n B 2 10 DT 10 22 22 DT DT B . n B 2 11 DG 11 23 23 DG DG B . n B 2 12 DC 12 24 24 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CCI 1 25 25 CCI CCI B . D 4 NBU 1 26 26 NBU NBU B . E 3 CCI 1 27 27 CCI CCI B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-12 2 'Structure model' 1 1 2012-02-08 3 'Structure model' 1 2 2013-03-27 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Non-polymer description' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_entity_src_syn 3 5 'Structure model' pdbx_nmr_software 4 5 'Structure model' pdbx_seq_map_depositor_info 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.page_last' 2 4 'Structure model' '_citation.pdbx_database_id_DOI' 3 4 'Structure model' '_citation.title' 4 5 'Structure model' '_pdbx_nmr_software.name' 5 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_ref_seq.db_align_end' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.51 108.30 2.21 0.30 N 2 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.42 108.30 2.12 0.30 N 3 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.68 108.30 2.38 0.30 N 4 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.29 108.30 1.99 0.30 N 5 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.58 108.30 2.28 0.30 N 6 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 110.13 108.30 1.83 0.30 N 7 1 N1 B DT 22 ? ? C2 B DT 22 ? ? N3 B DT 22 ? ? 118.30 114.60 3.70 0.60 N 8 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.36 108.30 2.06 0.30 N 9 2 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.16 108.30 1.86 0.30 N 10 2 C5 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 118.80 123.70 -4.90 0.80 N 11 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.65 108.30 2.35 0.30 N 12 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.77 108.30 2.47 0.30 N 13 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.69 108.30 2.39 0.30 N 14 2 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.35 108.30 2.05 0.30 N 15 2 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 110.56 108.30 2.26 0.30 N 16 3 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.97 102.40 -7.43 0.80 N 17 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.31 108.30 6.01 0.30 N 18 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.16 108.30 1.86 0.30 N 19 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.18 108.30 1.88 0.30 N 20 3 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 94.78 102.40 -7.62 0.80 N 21 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.42 108.30 7.12 0.30 N 22 4 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.35 102.40 -8.05 0.80 N 23 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.42 108.30 6.12 0.30 N 24 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.02 108.30 2.72 0.30 N 25 4 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 95.04 102.40 -7.36 0.80 N 26 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.15 108.30 6.85 0.30 N 27 5 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.44 102.40 -7.96 0.80 N 28 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.57 108.30 6.27 0.30 N 29 5 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 94.90 102.40 -7.50 0.80 N 30 5 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.17 108.30 6.87 0.30 N 31 5 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.38 108.30 2.08 0.30 N 32 6 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.21 102.40 -8.19 0.80 N 33 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.26 108.30 5.96 0.30 N 34 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.79 108.30 2.49 0.30 N 35 6 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 95.28 102.40 -7.12 0.80 N 36 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.42 108.30 7.12 0.30 N 37 7 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.41 102.40 -7.99 0.80 N 38 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.24 108.30 5.94 0.30 N 39 7 C5 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 118.44 123.70 -5.26 0.80 N 40 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.82 108.30 2.52 0.30 N 41 7 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 95.10 102.40 -7.30 0.80 N 42 7 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.64 108.30 7.34 0.30 N 43 7 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.46 108.30 2.16 0.30 N 44 8 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.36 102.40 -8.04 0.80 N 45 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.30 108.30 6.00 0.30 N 46 8 C5 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 118.89 123.70 -4.81 0.80 N 47 8 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.35 108.30 2.05 0.30 N 48 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.74 108.30 2.44 0.30 N 49 8 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 95.14 102.40 -7.26 0.80 N 50 8 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.09 108.30 6.79 0.30 N 51 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.87 108.30 2.57 0.30 N 52 9 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 94.33 102.40 -8.07 0.80 N 53 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.81 108.30 6.51 0.30 N 54 9 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.08 108.30 2.78 0.30 N 55 9 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 122.59 118.90 3.69 0.60 N 56 9 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 94.90 102.40 -7.50 0.80 N 57 9 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.08 108.30 6.78 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.135 'SIDE CHAIN' 2 1 DC A 2 ? ? 0.065 'SIDE CHAIN' 3 1 DT A 10 ? ? 0.061 'SIDE CHAIN' 4 1 DG A 11 ? ? 0.062 'SIDE CHAIN' 5 1 DG B 13 ? ? 0.110 'SIDE CHAIN' 6 1 DC B 14 ? ? 0.073 'SIDE CHAIN' 7 1 DA B 15 ? ? 0.064 'SIDE CHAIN' 8 1 DG B 17 ? ? 0.084 'SIDE CHAIN' 9 1 DA B 18 ? ? 0.078 'SIDE CHAIN' 10 1 DT B 22 ? ? 0.063 'SIDE CHAIN' 11 2 DG A 1 ? ? 0.144 'SIDE CHAIN' 12 2 DC A 2 ? ? 0.081 'SIDE CHAIN' 13 2 DG B 13 ? ? 0.107 'SIDE CHAIN' 14 2 DC B 14 ? ? 0.062 'SIDE CHAIN' 15 2 DA B 15 ? ? 0.062 'SIDE CHAIN' 16 2 DA B 18 ? ? 0.066 'SIDE CHAIN' 17 2 DT B 22 ? ? 0.099 'SIDE CHAIN' 18 2 DG B 23 ? ? 0.080 'SIDE CHAIN' 19 2 DC B 24 ? ? 0.074 'SIDE CHAIN' 20 3 DG A 1 ? ? 0.099 'SIDE CHAIN' 21 3 DC A 2 ? ? 0.086 'SIDE CHAIN' 22 3 DT A 10 ? ? 0.092 'SIDE CHAIN' 23 3 DG A 11 ? ? 0.063 'SIDE CHAIN' 24 3 DG B 13 ? ? 0.080 'SIDE CHAIN' 25 3 DC B 14 ? ? 0.083 'SIDE CHAIN' 26 3 DG B 17 ? ? 0.089 'SIDE CHAIN' 27 3 DA B 18 ? ? 0.072 'SIDE CHAIN' 28 4 DG A 1 ? ? 0.091 'SIDE CHAIN' 29 4 DC A 2 ? ? 0.086 'SIDE CHAIN' 30 4 DT A 7 ? ? 0.061 'SIDE CHAIN' 31 4 DG B 13 ? ? 0.078 'SIDE CHAIN' 32 4 DC B 14 ? ? 0.080 'SIDE CHAIN' 33 4 DA B 15 ? ? 0.056 'SIDE CHAIN' 34 4 DA B 18 ? ? 0.065 'SIDE CHAIN' 35 4 DT B 22 ? ? 0.175 'SIDE CHAIN' 36 5 DG A 1 ? ? 0.099 'SIDE CHAIN' 37 5 DC A 2 ? ? 0.090 'SIDE CHAIN' 38 5 DT A 10 ? ? 0.087 'SIDE CHAIN' 39 5 DG A 11 ? ? 0.085 'SIDE CHAIN' 40 5 DG B 13 ? ? 0.085 'SIDE CHAIN' 41 5 DC B 14 ? ? 0.081 'SIDE CHAIN' 42 5 DG B 17 ? ? 0.076 'SIDE CHAIN' 43 5 DA B 18 ? ? 0.068 'SIDE CHAIN' 44 5 DT B 22 ? ? 0.103 'SIDE CHAIN' 45 5 DG B 23 ? ? 0.066 'SIDE CHAIN' 46 5 DC B 24 ? ? 0.060 'SIDE CHAIN' 47 6 DG A 1 ? ? 0.108 'SIDE CHAIN' 48 6 DC A 2 ? ? 0.098 'SIDE CHAIN' 49 6 DT A 10 ? ? 0.072 'SIDE CHAIN' 50 6 DC A 12 ? ? 0.063 'SIDE CHAIN' 51 6 DG B 13 ? ? 0.068 'SIDE CHAIN' 52 6 DC B 14 ? ? 0.070 'SIDE CHAIN' 53 6 DA B 15 ? ? 0.060 'SIDE CHAIN' 54 6 DA B 18 ? ? 0.066 'SIDE CHAIN' 55 6 DT B 22 ? ? 0.092 'SIDE CHAIN' 56 6 DG B 23 ? ? 0.060 'SIDE CHAIN' 57 6 DC B 24 ? ? 0.078 'SIDE CHAIN' 58 7 DG A 1 ? ? 0.108 'SIDE CHAIN' 59 7 DC A 2 ? ? 0.094 'SIDE CHAIN' 60 7 DC A 5 ? ? 0.063 'SIDE CHAIN' 61 7 DT A 10 ? ? 0.072 'SIDE CHAIN' 62 7 DG B 13 ? ? 0.073 'SIDE CHAIN' 63 7 DC B 14 ? ? 0.083 'SIDE CHAIN' 64 7 DA B 15 ? ? 0.054 'SIDE CHAIN' 65 7 DA B 18 ? ? 0.080 'SIDE CHAIN' 66 7 DT B 22 ? ? 0.094 'SIDE CHAIN' 67 7 DG B 23 ? ? 0.073 'SIDE CHAIN' 68 7 DC B 24 ? ? 0.074 'SIDE CHAIN' 69 8 DG A 1 ? ? 0.099 'SIDE CHAIN' 70 8 DC A 2 ? ? 0.080 'SIDE CHAIN' 71 8 DT A 10 ? ? 0.076 'SIDE CHAIN' 72 8 DG A 11 ? ? 0.064 'SIDE CHAIN' 73 8 DG B 13 ? ? 0.083 'SIDE CHAIN' 74 8 DC B 14 ? ? 0.078 'SIDE CHAIN' 75 8 DA B 15 ? ? 0.056 'SIDE CHAIN' 76 8 DG B 17 ? ? 0.057 'SIDE CHAIN' 77 8 DT B 22 ? ? 0.088 'SIDE CHAIN' 78 8 DG B 23 ? ? 0.072 'SIDE CHAIN' 79 8 DC B 24 ? ? 0.065 'SIDE CHAIN' 80 9 DG A 1 ? ? 0.092 'SIDE CHAIN' 81 9 DC A 2 ? ? 0.090 'SIDE CHAIN' 82 9 DT A 10 ? ? 0.083 'SIDE CHAIN' 83 9 DG B 13 ? ? 0.078 'SIDE CHAIN' 84 9 DC B 14 ? ? 0.078 'SIDE CHAIN' 85 9 DA B 18 ? ? 0.061 'SIDE CHAIN' 86 9 DT B 22 ? ? 0.071 'SIDE CHAIN' 87 9 DC B 24 ? ? 0.075 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 3 "C3'" ? A DG 1 ? 'WRONG HAND' . 2 3 "C3'" ? B DG 13 ? 'WRONG HAND' . 3 4 "C3'" ? A DG 1 ? 'WRONG HAND' . 4 4 "C3'" ? B DG 13 ? 'WRONG HAND' . 5 5 "C3'" ? A DG 1 ? 'WRONG HAND' . 6 5 "C3'" ? B DG 13 ? 'WRONG HAND' . 7 6 "C3'" ? A DG 1 ? 'WRONG HAND' . 8 6 "C3'" ? B DG 13 ? 'WRONG HAND' . 9 7 "C3'" ? A DG 1 ? 'WRONG HAND' . 10 7 "C3'" ? B DG 13 ? 'WRONG HAND' . 11 8 "C3'" ? A DG 1 ? 'WRONG HAND' . 12 8 "C3'" ? B DG 13 ? 'WRONG HAND' . 13 9 "C3'" ? A DG 1 ? 'WRONG HAND' . 14 9 "C3'" ? B DG 13 ? 'WRONG HAND' . # _ndb_struct_conf_na.entry_id 1QMS _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.350 -0.235 -0.039 4.507 -7.825 -2.853 1 A_DG1:DC24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.448 -0.265 0.386 -2.788 -10.263 -2.522 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DA 3 1_555 B DT 10 1_555 0.404 -0.062 -0.227 -13.486 -21.391 -9.083 3 A_DA3:DT22_B A 3 ? B 22 ? 20 1 1 A DC 4 1_555 B DG 9 1_555 0.256 -0.175 0.300 -12.392 -1.435 -3.028 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DC 5 1_555 B DG 8 1_555 0.323 -0.212 0.300 -7.333 -0.824 -3.190 5 A_DC5:DG20_B A 5 ? B 20 ? 19 1 1 A DT 6 1_555 B DA 7 1_555 -0.148 -0.122 0.110 5.543 -5.194 -4.619 6 A_DT6:DA19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.309 -0.145 -0.181 9.031 -15.822 2.993 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DC 8 1_555 B DG 5 1_555 -0.051 -0.146 0.240 -2.659 -8.831 -1.736 8 A_DC8:DG17_B A 8 ? B 17 ? 19 1 1 A DC 9 1_555 B DG 4 1_555 -0.029 -0.158 0.297 -0.145 -8.437 -3.225 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -0.040 -0.147 -0.003 2.061 -16.292 -4.734 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DG 11 1_555 B DC 2 1_555 -0.418 -0.257 0.302 -6.241 -15.782 -1.949 11 A_DG11:DC14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.440 -0.213 0.283 -17.571 -5.460 -2.195 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.152 0.385 3.259 -5.050 2.607 43.805 0.267 -0.272 3.272 3.477 6.735 44.154 1 AA_DG1DC2:DG23DC24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.163 -0.245 3.306 5.521 15.730 33.631 -2.443 0.978 2.858 25.345 -8.896 37.428 2 AA_DC2DA3:DT22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DA 3 1_555 B DT 10 1_555 A DC 4 1_555 B DG 9 1_555 0.396 -0.106 3.182 -3.344 7.553 33.990 -1.277 -1.147 3.038 12.688 5.618 34.950 3 AA_DA3DC4:DG21DT22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DC 5 1_555 B DG 8 1_555 0.330 0.112 3.114 -0.321 2.903 38.356 -0.173 -0.539 3.112 4.411 0.488 38.463 4 AA_DC4DC5:DG20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DC 5 1_555 B DG 8 1_555 A DT 6 1_555 B DA 7 1_555 0.222 -0.234 2.901 0.692 3.709 29.524 -1.141 -0.304 2.855 7.240 -1.350 29.759 5 AA_DC5DT6:DA19DG20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DT 6 1_555 B DA 7 1_555 A DT 7 1_555 B DA 6 1_555 0.604 -0.059 2.990 3.956 9.772 30.698 -1.696 -0.437 2.890 17.811 -7.211 32.417 6 AA_DT6DT7:DA18DA19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DC 8 1_555 B DG 5 1_555 -0.180 -0.490 3.439 -2.067 15.603 39.474 -2.317 0.032 3.049 22.067 2.924 42.379 7 AA_DT7DC8:DG17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DC 8 1_555 B DG 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.023 0.007 3.112 -0.062 4.599 38.846 -0.515 0.028 3.093 6.885 0.093 39.107 8 AA_DC8DC9:DG16DG17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.106 -0.353 2.996 3.366 2.322 32.731 -0.981 0.708 2.940 4.101 -5.943 32.979 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DG 11 1_555 B DC 2 1_555 0.348 -0.478 3.135 -1.791 11.237 33.319 -2.359 -0.826 2.811 18.924 3.016 35.156 10 AA_DT10DG11:DC14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B DC 2 1_555 A DC 12 1_555 B DG 1 1_555 0.116 0.085 3.350 1.360 0.925 46.211 0.027 -0.030 3.353 1.178 -1.732 46.238 11 AA_DG11DC12:DG13DC14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALICHEAMICIN GAMMA-1-OLIGOSACCHARIDE' CCI 4 N-BUTANE NBU #