HEADER RECEPTOR/IMMUNE SYSTEM 01-NOV-99 1QO3 TITLE COMPLEX BETWEEN NK CELL RECEPTOR LY49A AND ITS MHC CLASS I LIGAND H- TITLE 2 2DD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I H-2DD HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-D ALPHA CHAIN, (H- COMPND 6 2D(D)); COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: B2M; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: LY49A; COMPND 15 CHAIN: C, D; COMPND 16 FRAGMENT: C-TYPE LECTIN-LIKE DOMAIN; COMPND 17 SYNONYM: NK-CELL SURFACE GLYCOPROTEIN YE1/48, T LYMPHOCYTE ANTIGEN COMPND 18 A1, LY49-A ANTIGEN, LY49A; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: HIV ENVELOPE GLYCOPROTEIN 120 PEPTIDE; COMPND 22 CHAIN: P; COMPND 23 FRAGMENT: RESIDUES 318-327; COMPND 24 ENGINEERED: YES; COMPND 25 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL: MOST NUCLEATED CELLS; SOURCE 7 CELLULAR_LOCATION: CELL SURFACE; SOURCE 8 GENE: H-2D; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_CELLULAR_LOCATION: INCLUSION BODY; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 STRAIN: C57BL/6; SOURCE 19 CELL: MOST NUCLEATED CELLS; SOURCE 20 CELLULAR_LOCATION: CELL SURFACE; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_CELLULAR_LOCATION: INCLUSION BODY; SOURCE 25 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 26 MOL_ID: 3; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_COMMON: MOUSE; SOURCE 29 ORGANISM_TAXID: 10090; SOURCE 30 STRAIN: C57BL/6; SOURCE 31 CELL: NATURAL KILLER CELLS SOME T CELLS; SOURCE 32 CELLULAR_LOCATION: CELL SURFACE; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 35 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 36 EXPRESSION_SYSTEM_CELLULAR_LOCATION: INCLUSION BODY; SOURCE 37 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 38 MOL_ID: 4; SOURCE 39 SYNTHETIC: YES; SOURCE 40 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS; SOURCE 41 ORGANISM_COMMON: HIV; SOURCE 42 ORGANISM_TAXID: 12721 KEYWDS RECEPTOR/IMMUNE SYSTEM, COMPLEX (NK RECEPTOR-MHC CLASS I), NK CELL, KEYWDS 2 INHIBITORY RECEPTOR, MHC-I, C-TYPE LECTIN-LIKE, HISTOCOMPATIBILITY, KEYWDS 3 B2M, LY49, LY-49, RECEPTOR-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.TORMO,R.A.MARIUZZA REVDAT 5 13-DEC-23 1QO3 1 REMARK REVDAT 4 15-APR-15 1QO3 1 REMARK REVDAT 3 23-JAN-13 1QO3 1 COMPND REMARK VERSN SEQADV REVDAT 3 2 1 FORMUL REVDAT 2 24-FEB-09 1QO3 1 VERSN REVDAT 1 02-JAN-00 1QO3 0 JRNL AUTH J.TORMO,K.NATARAJAN,D.H.MARGULIES,R.A.MARIUZZA JRNL TITL CRYSTAL STRUCTURE OF A LECTIN-LIKE NATURAL KILLER CELL JRNL TITL 2 RECEPTOR BOUND TO ITS MHC CLASS I LIGAND JRNL REF NATURE V. 402 623 1999 JRNL REFN ISSN 0028-0836 JRNL PMID 10604468 JRNL DOI 10.1038/45170 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.NATARAJAN,L.F.BOYD,P.SCHUCK,W.M.YOKOYAMA,D.ELIAT, REMARK 1 AUTH 2 D.H.MARGULIES REMARK 1 TITL INTERACTION OF THE NK CELL INHIBITORY RECEPTOR LY49A WITH REMARK 1 TITL 2 H-2DD: IDENTIFICATION OF A SITE DISTINCT FROM THE TCR SITE. REMARK 1 REF IMMUNITY V. 11 591 1999 REMARK 1 REFN ISSN 1074-7613 REMARK 1 PMID 10591184 REMARK 1 DOI 10.1016/S1074-7613(00)80134-X REMARK 1 REFERENCE 2 REMARK 1 AUTH H.LI,K.NATARAJAN,E.L.MALCHIODI,D.H.MARGULIES,R.A.MARIUZZA REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF H-2DD COMPLEXED WITH AN REMARK 1 TITL 2 IMMUNODOMINANT PEPTIDE FROM HUMAN IMMUNODEFICIENCY VIRUS REMARK 1 TITL 3 ENVELOPE GLYCOPROTEIN 120 REMARK 1 REF J.MOL.BIOL. V. 283 179 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 9761682 REMARK 1 DOI 10.1006/JMBI.1998.2091 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 32986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3755 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -3.36000 REMARK 3 B33 (A**2) : 3.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.740 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.480 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.450 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.170 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 28.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ETH.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ETH.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1290004218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 15.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16100 REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.9 REMARK 200 STARTING MODEL: PDB ENTRIES 1B6E, 1DDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.48150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.65900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.47850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.65900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.48150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.47850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL_UNIT: PROTEIN-PROTEIN COMPLEX BETWEEN REMARK 300 THE NK-CELL SURFACE GLYCOPROTEIN DIMERIC AND THE REMARK 300 HETEROTRIMER CONSISTING OF THE H-2DD HEAVY CHAIN, REMARK 300 THE BETA-2-MICROGLOBULIN AND THE HIV ENVELOPE REMARK 300 PEPTIDE. THERE IS A SECOND COMPLEX FORMED THROUGH REMARK 300 SITE 2, AS DESCRIBED IN THE MAIN REFERENCE, AND REMARK 300 CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 300 GIVEN BELOW. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 48.47850 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 49.65900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -48.47850 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.65900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 276 REMARK 465 GLU A 277 REMARK 465 THR C 135 REMARK 465 GLY C 136 REMARK 465 ARG C 137 REMARK 465 GLY C 138 REMARK 465 ASP C 139 REMARK 465 LYS C 259 REMARK 465 PHE C 260 REMARK 465 PRO C 261 REMARK 465 HIS C 262 REMARK 465 SER D 126 REMARK 465 THR D 127 REMARK 465 VAL D 128 REMARK 465 LEU D 129 REMARK 465 ASP D 130 REMARK 465 SER D 131 REMARK 465 LEU D 132 REMARK 465 GLN D 133 REMARK 465 HIS D 134 REMARK 465 THR D 135 REMARK 465 GLY D 136 REMARK 465 ARG D 137 REMARK 465 GLY D 138 REMARK 465 PHE D 260 REMARK 465 PRO D 261 REMARK 465 HIS D 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 63.65 -158.18 REMARK 500 TRP A 114 82.69 -163.43 REMARK 500 ASP A 198 -159.98 -94.21 REMARK 500 GLU A 223 64.54 -53.58 REMARK 500 LEU A 224 45.44 -76.67 REMARK 500 GLN A 226 79.25 -54.36 REMARK 500 GLU A 227 100.10 41.02 REMARK 500 GLN A 255 0.60 -62.41 REMARK 500 GLU B 16 117.21 -164.59 REMARK 500 ASN B 17 138.98 -38.85 REMARK 500 TRP B 60 -15.09 88.26 REMARK 500 MET C 148 33.02 -90.09 REMARK 500 LEU C 172 -169.65 -111.81 REMARK 500 LEU C 175 129.08 -36.44 REMARK 500 LYS C 204 52.59 -94.48 REMARK 500 LYS C 205 -7.50 -168.37 REMARK 500 LYS C 206 60.17 39.05 REMARK 500 THR C 222 48.89 -81.09 REMARK 500 ARG C 223 -6.29 -146.43 REMARK 500 MET D 155 42.32 -76.01 REMARK 500 LEU D 175 131.84 -33.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2025 DISTANCE = 5.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1278 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NATURAL VARIANTS ARISE FROM STRAIN C57BL/6 DBREF 1QO3 A 1 1 PDB 1QO3 1QO3 1 1 DBREF 1QO3 A 2 277 UNP P01900 HA12_MOUSE 26 301 DBREF 1QO3 B 0 0 PDB 1QO3 1QO3 0 0 DBREF 1QO3 B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 1QO3 P 1 10 UNP P04582 ENV_HV1B8 311 320 DBREF 1QO3 C 126 262 UNP P20937 LY4A_MOUSE 126 262 DBREF 1QO3 D 126 262 UNP P20937 LY4A_MOUSE 126 262 SEQADV 1QO3 ALA B 85 UNP P01887 ASP 105 VARIANT SEQADV 1QO3 SER C 126 UNP P20937 LYS 126 ENGINEERED MUTATION SEQADV 1QO3 THR C 166 UNP P20937 ALA 166 VARIANT SEQADV 1QO3 ARG C 223 UNP P20937 GLY 223 VARIANT SEQADV 1QO3 SER D 126 UNP P20937 LYS 126 ENGINEERED MUTATION SEQADV 1QO3 THR D 166 UNP P20937 ALA 166 VARIANT SEQADV 1QO3 ARG D 223 UNP P20937 GLY 223 VARIANT SEQRES 1 A 277 MET SER HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 A 277 ARG PRO GLY PHE GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 A 277 TYR VAL ASP ASN THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 277 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP ILE SEQRES 5 A 277 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR ARG SEQRES 6 A 277 ARG ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 A 277 ARG THR ALA LEU ARG TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 A 277 SER HIS THR LEU GLN TRP MET ALA GLY CYS ASP VAL GLU SEQRES 9 A 277 SER ASP GLY ARG LEU LEU ARG GLY TYR TRP GLN PHE ALA SEQRES 10 A 277 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 277 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 277 ARG ARG LYS TRP GLU GLN ALA GLY ALA ALA GLU ARG ASP SEQRES 13 A 277 ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG SEQRES 14 A 277 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 277 ASP PRO PRO LYS ALA HIS VAL THR HIS HIS ARG ARG PRO SEQRES 16 A 277 GLU GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 277 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 277 GLU GLU LEU THR GLN GLU MET GLU LEU VAL GLU THR ARG SEQRES 19 A 277 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 277 VAL VAL PRO LEU GLY LYS GLU GLN LYS TYR THR CYS HIS SEQRES 21 A 277 VAL GLU HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 277 TRP GLY LYS GLU SEQRES 1 B 100 MET ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 B 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 B 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 B 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 B 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 B 100 TYR ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO SEQRES 8 B 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 137 SER THR VAL LEU ASP SER LEU GLN HIS THR GLY ARG GLY SEQRES 2 C 137 ASP LYS VAL TYR TRP PHE CYS TYR GLY MET LYS CYS TYR SEQRES 3 C 137 TYR PHE VAL MET ASP ARG LYS THR TRP SER GLY CYS LYS SEQRES 4 C 137 GLN THR CYS GLN SER SER SER LEU SER LEU LEU LYS ILE SEQRES 5 C 137 ASP ASP GLU ASP GLU LEU LYS PHE LEU GLN LEU VAL VAL SEQRES 6 C 137 PRO SER ASP SER CYS TRP VAL GLY LEU SER TYR ASP ASN SEQRES 7 C 137 LYS LYS LYS ASP TRP ALA TRP ILE ASP ASN ARG PRO SER SEQRES 8 C 137 LYS LEU ALA LEU ASN THR ARG LYS TYR ASN ILE ARG ASP SEQRES 9 C 137 GLY GLY CYS MET LEU LEU SER LYS THR ARG LEU ASP ASN SEQRES 10 C 137 GLY ASN CYS ASP GLN VAL PHE ILE CYS ILE CYS GLY LYS SEQRES 11 C 137 ARG LEU ASP LYS PHE PRO HIS SEQRES 1 D 137 SER THR VAL LEU ASP SER LEU GLN HIS THR GLY ARG GLY SEQRES 2 D 137 ASP LYS VAL TYR TRP PHE CYS TYR GLY MET LYS CYS TYR SEQRES 3 D 137 TYR PHE VAL MET ASP ARG LYS THR TRP SER GLY CYS LYS SEQRES 4 D 137 GLN THR CYS GLN SER SER SER LEU SER LEU LEU LYS ILE SEQRES 5 D 137 ASP ASP GLU ASP GLU LEU LYS PHE LEU GLN LEU VAL VAL SEQRES 6 D 137 PRO SER ASP SER CYS TRP VAL GLY LEU SER TYR ASP ASN SEQRES 7 D 137 LYS LYS LYS ASP TRP ALA TRP ILE ASP ASN ARG PRO SER SEQRES 8 D 137 LYS LEU ALA LEU ASN THR ARG LYS TYR ASN ILE ARG ASP SEQRES 9 D 137 GLY GLY CYS MET LEU LEU SER LYS THR ARG LEU ASP ASN SEQRES 10 D 137 GLY ASN CYS ASP GLN VAL PHE ILE CYS ILE CYS GLY LYS SEQRES 11 D 137 ARG LEU ASP LYS PHE PRO HIS SEQRES 1 P 10 ARG GLY PRO GLY ARG ALA PHE VAL THR ILE HET EDO A1276 4 HET EDO A1277 4 HET EDO A1278 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 HOH *352(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 GLY A 151 1 15 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 LEU A 180 1 6 HELIX 7 7 LYS A 253 GLN A 255 5 3 HELIX 8 8 THR C 159 SER C 170 1 12 HELIX 9 9 ASP C 179 VAL C 190 1 12 HELIX 10 10 ASN C 203 LYS C 206 5 4 HELIX 11 11 ASN C 226 GLY C 230 5 5 HELIX 12 12 THR D 159 SER D 170 1 12 HELIX 13 13 ASP D 179 VAL D 190 1 12 HELIX 14 14 ASN D 221 TYR D 225 5 5 HELIX 15 15 ASN D 226 GLY D 230 5 5 SHEET 1 A 7 THR A 31 ASP A 37 0 SHEET 2 A 7 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 3 A 7 HIS A 3 VAL A 12 -1 N VAL A 12 O ARG A 21 SHEET 4 A 7 THR A 94 VAL A 103 -1 N VAL A 103 O HIS A 3 SHEET 5 A 7 LEU A 109 TYR A 118 -1 N ALA A 117 O GLN A 96 SHEET 6 A 7 CYS A 121 LEU A 126 -1 N ILE A 124 O PHE A 116 SHEET 7 A 7 TRP A 133 ALA A 135 -1 N THR A 134 O ALA A 125 SHEET 1 B 3 LYS A 186 ARG A 193 0 SHEET 2 B 3 VAL A 199 LEU A 206 -1 N LEU A 206 O LYS A 186 SHEET 3 B 3 LYS A 243 VAL A 249 -1 N VAL A 249 O VAL A 199 SHEET 1 C 3 THR A 214 LEU A 219 0 SHEET 2 C 3 TYR A 257 GLU A 262 -1 N GLU A 262 O THR A 214 SHEET 3 C 3 LEU A 270 LEU A 272 -1 N LEU A 272 O CYS A 259 SHEET 1 D 3 GLN B 6 SER B 11 0 SHEET 2 D 3 PRO B 20 THR B 28 -1 N THR B 28 O GLN B 6 SHEET 3 D 3 ILE B 64 THR B 71 -1 N PHE B 70 O ASN B 21 SHEET 1 E 3 GLU B 36 LYS B 41 0 SHEET 2 E 3 TYR B 78 LYS B 83 -1 N LYS B 83 O GLU B 36 SHEET 3 E 3 LYS B 91 TYR B 94 -1 N VAL B 93 O CYS B 80 SHEET 1 F 3 VAL C 141 TYR C 146 0 SHEET 2 F 3 LYS C 149 VAL C 154 -1 N PHE C 153 O TYR C 142 SHEET 3 F 3 CYS C 251 ARG C 256 -1 N LYS C 255 O CYS C 150 SHEET 1 G 2 LEU C 199 ASP C 202 0 SHEET 2 G 2 ASP C 207 TRP C 210 -1 N ALA C 209 O SER C 200 SHEET 1 H 2 CYS C 232 LEU C 235 0 SHEET 2 H 2 LEU C 240 GLY C 243 -1 N GLY C 243 O CYS C 232 SHEET 1 I 3 VAL D 141 TYR D 146 0 SHEET 2 I 3 LYS D 149 VAL D 154 -1 N PHE D 153 O TYR D 142 SHEET 3 I 3 CYS D 251 ARG D 256 -1 N LYS D 255 O CYS D 150 SHEET 1 J 2 LEU D 199 ASP D 202 0 SHEET 2 J 2 ASP D 207 TRP D 210 -1 N ALA D 209 O SER D 200 SHEET 1 K 2 CYS D 232 LEU D 235 0 SHEET 2 K 2 LEU D 240 GLY D 243 -1 N GLY D 243 O CYS D 232 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS C 145 CYS C 150 1555 1555 2.04 SSBOND 5 CYS C 163 CYS C 251 1555 1555 2.03 SSBOND 6 CYS C 167 CYS C 253 1555 1555 2.04 SSBOND 7 CYS C 232 CYS C 245 1555 1555 2.04 SSBOND 8 CYS D 145 CYS D 150 1555 1555 2.04 SSBOND 9 CYS D 163 CYS D 251 1555 1555 2.03 SSBOND 10 CYS D 167 CYS D 253 1555 1555 2.04 SSBOND 11 CYS D 232 CYS D 245 1555 1555 2.04 CISPEP 1 TYR A 209 PRO A 210 0 0.82 CISPEP 2 HIS B 31 PRO B 32 0 0.12 SITE 1 AC1 2 ARG A 170 HOH C2064 SITE 1 AC2 7 TRP A 114 TRP A 147 ALA A 152 ASP A 156 SITE 2 AC2 7 HOH A2157 ARG P 5 VAL P 8 SITE 1 AC3 4 HIS A 188 TRP A 204 PRO B 14 HOH B2017 CRYST1 78.963 96.957 99.318 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010069 0.00000