HEADER OXIDOREDUCTASE 01-JUN-99 1QP8 TITLE CRYSTAL STRUCTURE OF A PUTATIVE FORMATE DEHYDROGENASE FROM TITLE 2 PYROBACULUM AEROPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FULL LENGTH PROTEIN WITH C-TERM HIS TAG COMPND 6 (HHHHHH). HIS TAG WAS NOT SEEN IN THE DENSITY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: T7 PROMOTER FROM A PET VECTOR; SOURCE 7 OTHER_DETAILS: HYPERTHERMOPHILIC ARCHEABACTERIUM KEYWDS SIMILAR TO THE PREVIOUSLY SOLVED FORMATE DEHYDROGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT,J.NEWMAN,G.S.WALDO,T.C.TERWILLIGER REVDAT 2 24-FEB-09 1QP8 1 VERSN REVDAT 1 11-JUN-99 1QP8 0 JRNL AUTH T.S.PEAT,J.NEWMAN,G.S.WALDO,T.C.TERWILLIGER JRNL TITL THE CRYSTAL STRUCTURE OF A PUTATIVE FORMATE JRNL TITL 2 DEHYDROGENASE FROM PYROBACULUM AEROPHILUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1417 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BULK SOLVENT WAS USED AS REMARK 3 IMPLEMENTED IN CNS. REMARK 4 REMARK 4 1QP8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-99. REMARK 100 THE RCSB ID CODE IS RCSB009137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ABOUT 3M FORMATE AT PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.23750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 159.71250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.23750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 159.71250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT HAS TWO MOLECULES, A AND B. THE A REMARK 300 MOLECULE IS BOUND TO NADP, WHEREAS THERE IS NO DENSITY FOR THE REMARK 300 NADP IN THE B MOLECULE. THE A MOLECULE IS ALSO MUCH BETTER REMARK 300 ORDERED THAN THE B MOLECULE IN THE SMALL DOMAIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 303 REMARK 465 SER B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 302 CA C O REMARK 470 GLY B 302 CA C O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 109 CE NZ REMARK 480 GLU A 125 CG CD OE1 OE2 REMARK 480 GLU A 159 CG CD OE1 OE2 REMARK 480 LYS A 193 CE NZ REMARK 480 ARG A 272 NE CZ NH1 NH2 REMARK 480 GLU B 2 CG CD OE1 OE2 REMARK 480 LEU B 3 CG CD1 CD2 REMARK 480 VAL B 5 CG1 CG2 REMARK 480 LEU B 9 CG CD1 CD2 REMARK 480 LEU B 36 CG CD1 CD2 REMARK 480 VAL B 37 CG1 CG2 REMARK 480 SER B 38 OG REMARK 480 ASP B 62 CG OD1 OD2 REMARK 480 ARG B 110 CZ NH1 NH2 REMARK 480 GLU B 125 CG CD OE1 OE2 REMARK 480 THR B 156 OG1 CG2 REMARK 480 GLU B 159 CG CD OE1 OE2 REMARK 480 LYS B 186 CG CD CE NZ REMARK 480 TYR B 285 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG B 292 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 298 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 21 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 -137.25 -28.26 REMARK 500 ALA A 35 -126.24 151.27 REMARK 500 LEU A 36 89.89 40.39 REMARK 500 TRP A 66 -53.00 62.76 REMARK 500 PRO A 71 -11.60 -49.60 REMARK 500 THR A 74 105.01 60.27 REMARK 500 ALA A 79 124.21 149.82 REMARK 500 GLU A 134 -83.05 75.04 REMARK 500 SER A 154 163.21 176.84 REMARK 500 ARG A 155 -71.15 -71.13 REMARK 500 PRO A 157 -139.99 -51.81 REMARK 500 LYS A 158 113.66 62.48 REMARK 500 GLU A 159 -143.97 -155.71 REMARK 500 PRO A 161 51.87 -53.42 REMARK 500 PHE A 164 141.96 -29.35 REMARK 500 ALA A 171 -34.14 173.14 REMARK 500 GLU A 174 24.95 47.43 REMARK 500 ALA A 181 34.60 -147.97 REMARK 500 ASN A 185 -168.39 -129.05 REMARK 500 ARG A 189 156.26 -46.53 REMARK 500 GLU A 213 -18.93 -49.59 REMARK 500 ARG A 240 79.00 35.23 REMARK 500 ASN A 241 -17.08 84.40 REMARK 500 PHE A 243 -57.33 72.73 REMARK 500 ALA A 262 72.30 -68.70 REMARK 500 ILE A 301 -68.04 64.76 REMARK 500 PHE B 7 -159.58 -146.97 REMARK 500 PRO B 10 175.96 -58.54 REMARK 500 PRO B 11 -85.93 -43.30 REMARK 500 GLU B 15 24.94 -68.74 REMARK 500 PHE B 21 168.51 30.86 REMARK 500 ILE B 23 118.66 82.13 REMARK 500 ASN B 31 39.43 95.47 REMARK 500 VAL B 32 -77.39 -103.47 REMARK 500 ALA B 34 -142.61 -61.40 REMARK 500 ALA B 35 -113.85 -178.86 REMARK 500 LEU B 36 90.35 38.78 REMARK 500 ARG B 50 101.47 41.15 REMARK 500 LYS B 52 -71.69 -71.50 REMARK 500 THR B 58 -157.45 -71.40 REMARK 500 LEU B 64 138.92 -38.18 REMARK 500 TRP B 66 -73.06 71.66 REMARK 500 PRO B 71 21.62 -49.28 REMARK 500 HIS B 72 -51.15 -130.51 REMARK 500 VAL B 73 -36.24 -35.17 REMARK 500 THR B 74 152.42 60.91 REMARK 500 ALA B 79 125.47 148.13 REMARK 500 ARG B 115 51.29 -115.66 REMARK 500 GLU B 134 -83.15 75.52 REMARK 500 SER B 154 164.65 177.01 REMARK 500 PRO B 157 -140.17 -51.94 REMARK 500 LYS B 158 113.38 63.43 REMARK 500 GLU B 159 -143.43 -155.79 REMARK 500 PRO B 161 50.28 -51.35 REMARK 500 PHE B 164 141.91 -26.64 REMARK 500 ALA B 171 -31.71 173.49 REMARK 500 GLU B 174 24.43 47.51 REMARK 500 ALA B 181 36.77 -148.55 REMARK 500 ASN B 185 -168.55 -129.30 REMARK 500 ARG B 189 154.01 -48.16 REMARK 500 ARG B 211 132.50 -37.58 REMARK 500 ARG B 240 82.25 31.42 REMARK 500 ASN B 241 -16.94 84.03 REMARK 500 PHE B 243 -58.36 74.62 REMARK 500 ASN B 254 34.34 -96.47 REMARK 500 PRO B 259 48.37 -72.09 REMARK 500 ALA B 262 72.36 -67.92 REMARK 500 VAL B 279 -75.24 -47.70 REMARK 500 TYR B 285 21.84 -71.20 REMARK 500 ALA B 286 -55.11 -138.15 REMARK 500 THR B 287 25.61 -65.30 REMARK 500 PRO B 291 94.95 -67.28 REMARK 500 ALA B 295 -154.96 -56.28 REMARK 500 LYS B 296 87.71 -171.40 REMARK 500 ARG B 297 -56.89 -28.12 REMARK 500 ILE B 301 -95.14 61.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 310 DBREF 1QP8 A 1 301 UNP Q8ZXP5 Q8ZXP5_PYRAE 1 301 DBREF 1QP8 B 1 301 UNP Q8ZXP5 Q8ZXP5_PYRAE 1 301 SEQRES 1 A 303 MSE GLU LEU TYR VAL ASN PHE GLU LEU PRO PRO GLU ALA SEQRES 2 A 303 GLU GLU GLU LEU ARG LYS TYR PHE LYS ILE VAL ARG GLY SEQRES 3 A 303 GLY ASP LEU GLY ASN VAL GLU ALA ALA LEU VAL SER ARG SEQRES 4 A 303 ILE THR ALA GLU GLU LEU ALA LYS MSE PRO ARG LEU LYS SEQRES 5 A 303 PHE ILE GLN VAL VAL THR ALA GLY LEU ASP HIS LEU PRO SEQRES 6 A 303 TRP GLU SER ILE PRO PRO HIS VAL THR VAL ALA GLY ASN SEQRES 7 A 303 ALA GLY SER ASN ALA ASP ALA VAL ALA GLU PHE ALA LEU SEQRES 8 A 303 ALA LEU LEU LEU ALA PRO TYR LYS ARG ILE ILE GLN TYR SEQRES 9 A 303 GLY GLU LYS MSE LYS ARG GLY ASP TYR GLY ARG ASP VAL SEQRES 10 A 303 GLU ILE PRO LEU ILE GLN GLY GLU LYS VAL ALA VAL LEU SEQRES 11 A 303 GLY LEU GLY GLU ILE GLY THR ARG VAL GLY LYS ILE LEU SEQRES 12 A 303 ALA ALA LEU GLY ALA GLN VAL ARG GLY PHE SER ARG THR SEQRES 13 A 303 PRO LYS GLU GLY PRO TRP ARG PHE THR ASN SER LEU GLU SEQRES 14 A 303 GLU ALA LEU ARG GLU ALA ARG ALA ALA VAL CYS ALA LEU SEQRES 15 A 303 PRO LEU ASN LYS HIS THR ARG GLY LEU VAL LYS TYR GLN SEQRES 16 A 303 HIS LEU ALA LEU MSE ALA GLU ASP ALA VAL PHE VAL ASN SEQRES 17 A 303 VAL GLY ARG ALA GLU VAL LEU ASP ARG ASP GLY VAL LEU SEQRES 18 A 303 ARG ILE LEU LYS GLU ARG PRO GLN PHE ILE PHE ALA SER SEQRES 19 A 303 ASP VAL TRP TRP GLY ARG ASN ASP PHE ALA LYS ASP ALA SEQRES 20 A 303 GLU PHE PHE SER LEU PRO ASN VAL VAL ALA THR PRO TRP SEQRES 21 A 303 VAL ALA GLY GLY TYR GLY ASN GLU ARG VAL TRP ARG GLN SEQRES 22 A 303 MSE VAL MSE GLU ALA VAL ARG ASN LEU ILE THR TYR ALA SEQRES 23 A 303 THR GLY GLY ARG PRO ARG ASN ILE ALA LYS ARG GLU ASP SEQRES 24 A 303 TYR ILE GLY SER SEQRES 1 B 303 MSE GLU LEU TYR VAL ASN PHE GLU LEU PRO PRO GLU ALA SEQRES 2 B 303 GLU GLU GLU LEU ARG LYS TYR PHE LYS ILE VAL ARG GLY SEQRES 3 B 303 GLY ASP LEU GLY ASN VAL GLU ALA ALA LEU VAL SER ARG SEQRES 4 B 303 ILE THR ALA GLU GLU LEU ALA LYS MSE PRO ARG LEU LYS SEQRES 5 B 303 PHE ILE GLN VAL VAL THR ALA GLY LEU ASP HIS LEU PRO SEQRES 6 B 303 TRP GLU SER ILE PRO PRO HIS VAL THR VAL ALA GLY ASN SEQRES 7 B 303 ALA GLY SER ASN ALA ASP ALA VAL ALA GLU PHE ALA LEU SEQRES 8 B 303 ALA LEU LEU LEU ALA PRO TYR LYS ARG ILE ILE GLN TYR SEQRES 9 B 303 GLY GLU LYS MSE LYS ARG GLY ASP TYR GLY ARG ASP VAL SEQRES 10 B 303 GLU ILE PRO LEU ILE GLN GLY GLU LYS VAL ALA VAL LEU SEQRES 11 B 303 GLY LEU GLY GLU ILE GLY THR ARG VAL GLY LYS ILE LEU SEQRES 12 B 303 ALA ALA LEU GLY ALA GLN VAL ARG GLY PHE SER ARG THR SEQRES 13 B 303 PRO LYS GLU GLY PRO TRP ARG PHE THR ASN SER LEU GLU SEQRES 14 B 303 GLU ALA LEU ARG GLU ALA ARG ALA ALA VAL CYS ALA LEU SEQRES 15 B 303 PRO LEU ASN LYS HIS THR ARG GLY LEU VAL LYS TYR GLN SEQRES 16 B 303 HIS LEU ALA LEU MSE ALA GLU ASP ALA VAL PHE VAL ASN SEQRES 17 B 303 VAL GLY ARG ALA GLU VAL LEU ASP ARG ASP GLY VAL LEU SEQRES 18 B 303 ARG ILE LEU LYS GLU ARG PRO GLN PHE ILE PHE ALA SER SEQRES 19 B 303 ASP VAL TRP TRP GLY ARG ASN ASP PHE ALA LYS ASP ALA SEQRES 20 B 303 GLU PHE PHE SER LEU PRO ASN VAL VAL ALA THR PRO TRP SEQRES 21 B 303 VAL ALA GLY GLY TYR GLY ASN GLU ARG VAL TRP ARG GLN SEQRES 22 B 303 MSE VAL MSE GLU ALA VAL ARG ASN LEU ILE THR TYR ALA SEQRES 23 B 303 THR GLY GLY ARG PRO ARG ASN ILE ALA LYS ARG GLU ASP SEQRES 24 B 303 TYR ILE GLY SER MODRES 1QP8 MSE A 1 MET SELENOMETHIONINE MODRES 1QP8 MSE A 48 MET SELENOMETHIONINE MODRES 1QP8 MSE A 108 MET SELENOMETHIONINE MODRES 1QP8 MSE A 200 MET SELENOMETHIONINE MODRES 1QP8 MSE A 274 MET SELENOMETHIONINE MODRES 1QP8 MSE A 276 MET SELENOMETHIONINE MODRES 1QP8 MSE B 1 MET SELENOMETHIONINE MODRES 1QP8 MSE B 48 MET SELENOMETHIONINE MODRES 1QP8 MSE B 108 MET SELENOMETHIONINE MODRES 1QP8 MSE B 200 MET SELENOMETHIONINE MODRES 1QP8 MSE B 274 MET SELENOMETHIONINE MODRES 1QP8 MSE B 276 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 48 8 HET MSE A 108 8 HET MSE A 200 8 HET MSE A 274 8 HET MSE A 276 8 HET MSE B 1 8 HET MSE B 48 8 HET MSE B 108 8 HET MSE B 200 8 HET MSE B 274 8 HET MSE B 276 8 HET NDP A 310 48 HETNAM MSE SELENOMETHIONINE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 NDP C21 H30 N7 O17 P3 FORMUL 4 HOH *3(H2 O) HELIX 1 1 PRO A 10 LYS A 19 1 10 HELIX 2 2 THR A 41 MSE A 48 1 8 HELIX 3 3 ASN A 82 LYS A 99 1 18 HELIX 4 4 ARG A 100 ARG A 110 1 11 HELIX 5 5 GLU A 134 LEU A 146 1 13 HELIX 6 6 LYS A 193 ALA A 198 1 6 HELIX 7 7 ARG A 211 VAL A 214 5 4 HELIX 8 8 ASP A 216 ARG A 227 1 12 HELIX 9 9 PHE A 243 LYS A 245 5 3 HELIX 10 10 ASP A 246 SER A 251 1 6 HELIX 11 11 ASN A 267 THR A 287 1 21 HELIX 12 12 LYS A 296 TYR A 300 5 5 HELIX 13 13 PRO B 10 GLU B 15 1 6 HELIX 14 14 THR B 41 LYS B 47 1 7 HELIX 15 15 ASN B 82 LYS B 99 1 18 HELIX 16 16 ARG B 100 ARG B 110 1 11 HELIX 17 17 GLU B 134 LEU B 146 1 13 HELIX 18 18 LYS B 193 ALA B 198 1 6 HELIX 19 19 ARG B 211 VAL B 214 5 4 HELIX 20 20 ASP B 216 ARG B 227 1 12 HELIX 21 21 PHE B 243 LYS B 245 5 3 HELIX 22 22 ASP B 246 SER B 251 1 6 HELIX 23 23 ASN B 267 TYR B 285 1 19 HELIX 24 24 LYS B 296 TYR B 300 5 5 SHEET 1 A 2 GLU A 2 TYR A 4 0 SHEET 2 A 2 LYS A 22 VAL A 24 1 O LYS A 22 N LEU A 3 SHEET 1 B 2 ILE A 54 GLN A 55 0 SHEET 2 B 2 VAL A 75 ALA A 76 1 N ALA A 76 O ILE A 54 SHEET 1 C 6 GLN A 149 PHE A 153 0 SHEET 2 C 6 LYS A 126 LEU A 130 1 O VAL A 127 N ARG A 151 SHEET 3 C 6 ALA A 177 CYS A 180 1 O ALA A 177 N ALA A 128 SHEET 4 C 6 VAL A 205 ASN A 208 1 O VAL A 205 N ALA A 178 SHEET 5 C 6 ILE A 231 SER A 234 1 O ILE A 231 N PHE A 206 SHEET 6 C 6 VAL A 255 ALA A 257 1 N VAL A 256 O PHE A 232 SHEET 1 D 6 GLN B 149 PHE B 153 0 SHEET 2 D 6 LYS B 126 LEU B 130 1 O VAL B 127 N ARG B 151 SHEET 3 D 6 ALA B 177 CYS B 180 1 O ALA B 177 N ALA B 128 SHEET 4 D 6 VAL B 205 ASN B 208 1 O VAL B 205 N ALA B 178 SHEET 5 D 6 ILE B 231 SER B 234 1 O ILE B 231 N PHE B 206 SHEET 6 D 6 VAL B 255 ALA B 257 1 N VAL B 256 O PHE B 232 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C LYS A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N PRO A 49 1555 1555 1.34 LINK C LYS A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N LYS A 109 1555 1555 1.33 LINK C LEU A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N ALA A 201 1555 1555 1.32 LINK C GLN A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N VAL A 275 1555 1555 1.32 LINK C VAL A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N GLU A 277 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C LYS B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N PRO B 49 1555 1555 1.34 LINK C LYS B 107 N MSE B 108 1555 1555 1.33 LINK C MSE B 108 N LYS B 109 1555 1555 1.32 LINK C LEU B 199 N MSE B 200 1555 1555 1.33 LINK C MSE B 200 N ALA B 201 1555 1555 1.33 LINK C GLN B 273 N MSE B 274 1555 1555 1.33 LINK C MSE B 274 N VAL B 275 1555 1555 1.33 LINK C VAL B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N GLU B 277 1555 1555 1.33 SITE 1 AC1 21 ALA A 59 GLY A 60 ALA A 79 ASN A 82 SITE 2 AC1 21 LEU A 132 GLY A 133 GLU A 134 ILE A 135 SITE 3 AC1 21 SER A 154 ARG A 155 THR A 156 PRO A 183 SITE 4 AC1 21 ASN A 185 HIS A 187 THR A 188 VAL A 209 SITE 5 AC1 21 ARG A 211 ASP A 235 VAL A 236 TRP A 260 SITE 6 AC1 21 ALA A 262 CRYST1 101.760 101.760 212.950 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004696 0.00000 HETATM 1 N MSE A 1 36.850 14.240 128.424 1.00 47.29 N HETATM 2 CA MSE A 1 37.713 13.348 127.597 1.00 47.29 C HETATM 3 C MSE A 1 38.597 14.204 126.711 1.00 47.29 C HETATM 4 O MSE A 1 38.101 15.051 125.965 1.00 47.29 O HETATM 5 CB MSE A 1 36.852 12.441 126.730 1.00 80.02 C HETATM 6 CG MSE A 1 37.592 11.235 126.210 1.00 80.02 C HETATM 7 SE MSE A 1 36.581 10.187 125.136 1.00 80.02 SE HETATM 8 CE MSE A 1 34.909 10.460 125.823 1.00 80.02 C