HEADER LYASE 26-NOV-99 1QPB TITLE PYRUVATE DECARBOYXLASE FROM YEAST (FORM B) COMPLEXED WITH PYRUVAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE DECARBOXYLASE (FORM B); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-CARBOXYLASE, PYRUVIC DECARBOXYLASE, ALPHA-KETOACID COMPND 5 CARBOXYLASE; COMPND 6 EC: 4.1.1.1; COMPND 7 OTHER_DETAILS: FORM B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_TAXID: 520522; SOURCE 4 STRAIN: WEIHENSTEPHAN 34/70 (2124, BOHEMIAN LAGER) KEYWDS THIAMINE PYRUVATE, PYRUVAMIDE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.LU,D.DOBRITZSCH,G.SCHNEIDER REVDAT 4 13-DEC-23 1QPB 1 REMARK LINK REVDAT 3 22-DEC-09 1QPB 1 VERSN REVDAT 2 24-FEB-09 1QPB 1 VERSN REVDAT 1 04-FEB-00 1QPB 0 SPRSDE 04-FEB-00 1QPB 1YPD JRNL AUTH G.LU,D.DOBRITZSCH,S.BAUMANN,G.SCHNEIDER,S.KONIG JRNL TITL THE STRUCTURAL BASIS OF SUBSTRATE ACTIVATION IN YEAST JRNL TITL 2 PYRUVATE DECARBOXYLASE A CRYSTALLOGRAPHIC AND KINETIC STUDY JRNL REF EUR.J.BIOCHEM. V. 267 861 2000 JRNL REFN ISSN 0014-2956 JRNL PMID 10651824 JRNL DOI 10.1046/J.1432-1327.2000.01070.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.LU,D.DOBRITZSCH,S.KONIG,G.SCHNEIDER REMARK 1 TITL NOVEL TETRAMER ASSEMBLY OF PYRUVATE DECARBOXYLASE FROM REMARK 1 TITL 2 BREWER'S YEAST OBSERVED IN A NEW CRYSTAL FORM REMARK 1 REF FEBS LETT. V. 403 249 1997 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 9091311 REMARK 1 DOI 10.1016/S0014-5793(97)00057-4 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 3.8 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 15.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 42411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 34.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 540 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 25 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.230 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION WAS APPLIED. REMARK 4 REMARK 4 1QPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1290004428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 5.80 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PVD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-14% PEG6000 20MM SODIUM CITRATE AT REMARK 280 PH 5.7 1MM DTE, 5MM THDP, 5MM MGSO4, PH 5.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.52450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.52450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 145.04900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 557 REMARK 465 ALA A 558 REMARK 465 THR A 559 REMARK 465 ASN A 560 REMARK 465 ALA A 561 REMARK 465 LYS A 562 REMARK 465 GLN A 563 REMARK 465 MET B 1 REMARK 465 ALA B 557 REMARK 465 ALA B 558 REMARK 465 THR B 559 REMARK 465 ASN B 560 REMARK 465 ALA B 561 REMARK 465 LYS B 562 REMARK 465 GLN B 563 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ILE A 104 REMARK 475 SER A 105 REMARK 475 ALA A 106 REMARK 475 GLN A 107 REMARK 475 ALA A 108 REMARK 475 LYS A 109 REMARK 475 GLN A 110 REMARK 475 LEU A 111 REMARK 475 LEU A 112 REMARK 475 LEU A 113 REMARK 475 SER B 290 REMARK 475 ASP B 291 REMARK 475 PHE B 292 REMARK 475 ASN B 293 REMARK 475 THR B 294 REMARK 475 GLY B 295 REMARK 475 SER B 296 REMARK 475 PHE B 297 REMARK 475 SER B 298 REMARK 475 TYR B 299 REMARK 475 SER B 300 REMARK 475 TYR B 301 REMARK 475 LYS B 302 REMARK 475 THR B 303 REMARK 475 LYS B 304 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 107 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 9.27 -65.30 REMARK 500 ASN A 50 131.44 -175.88 REMARK 500 PHE A 74 138.12 -29.79 REMARK 500 SER A 103 94.04 -46.24 REMARK 500 SER A 105 41.76 -83.26 REMARK 500 LEU A 111 62.22 -108.11 REMARK 500 LEU A 112 103.19 -173.33 REMARK 500 HIS A 114 113.25 174.24 REMARK 500 HIS A 115 38.86 83.97 REMARK 500 ALA A 194 -73.88 -36.78 REMARK 500 ASN A 213 71.40 -168.21 REMARK 500 ARG A 224 36.41 -96.15 REMARK 500 VAL A 227 18.47 -140.08 REMARK 500 ALA A 229 -74.22 -54.53 REMARK 500 GLU A 230 -33.99 -38.37 REMARK 500 LEU A 288 -60.80 -152.12 REMARK 500 ASP A 291 116.15 -21.68 REMARK 500 ARG A 317 -93.85 63.04 REMARK 500 ALA A 338 -63.71 -24.36 REMARK 500 PRO A 346 85.72 -41.56 REMARK 500 ASN A 356 143.46 -17.68 REMARK 500 ALA A 358 107.21 -20.72 REMARK 500 ASN A 403 50.28 74.00 REMARK 500 ASP A 433 116.61 -164.51 REMARK 500 THR A 450 18.09 -140.04 REMARK 500 HIS A 481 142.34 179.49 REMARK 500 SER A 497 11.40 -66.52 REMARK 500 TYR A 507 -154.62 -127.49 REMARK 500 GLU A 508 120.83 -177.53 REMARK 500 ASN A 530 69.87 -69.87 REMARK 500 ASN B 50 124.08 -176.66 REMARK 500 LEU B 113 -48.03 -134.87 REMARK 500 ILE B 142 -3.62 -58.80 REMARK 500 THR B 144 12.29 -145.02 REMARK 500 PRO B 177 107.17 -52.47 REMARK 500 ASP B 202 -66.96 -27.66 REMARK 500 ALA B 220 -59.75 -20.31 REMARK 500 ASP B 253 97.58 -69.44 REMARK 500 ALA B 287 141.78 -39.86 REMARK 500 LEU B 288 -24.51 -171.28 REMARK 500 LEU B 289 -78.17 -97.96 REMARK 500 SER B 290 -52.06 66.63 REMARK 500 SER B 296 -82.64 50.77 REMARK 500 TYR B 299 92.71 -57.63 REMARK 500 SER B 300 -42.49 -155.55 REMARK 500 TYR B 301 -149.44 36.51 REMARK 500 THR B 303 74.17 49.62 REMARK 500 ASN B 305 79.51 49.42 REMARK 500 ARG B 317 -113.99 72.37 REMARK 500 LYS B 327 -77.67 -61.65 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD1 REMARK 620 2 ASN A 471 OD1 76.3 REMARK 620 3 ASN A 471 ND2 122.5 47.5 REMARK 620 4 GLY A 473 O 101.2 129.1 121.8 REMARK 620 5 TPP A 600 O1A 72.0 132.7 134.9 91.5 REMARK 620 6 TPP A 600 O3B 146.9 111.5 66.6 97.7 80.6 REMARK 620 7 HOH A2077 O 68.5 70.6 80.3 156.5 65.5 83.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 444 OD1 REMARK 620 2 ASN B 471 OD1 78.6 REMARK 620 3 GLY B 473 O 86.8 143.4 REMARK 620 4 TPP B 600 O1A 68.1 133.3 67.6 REMARK 620 5 TPP B 600 O3B 126.9 111.7 104.0 68.8 REMARK 620 6 HOH B2043 O 57.2 69.2 128.6 65.4 77.3 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: DSSP REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYM B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYM A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W93 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE PYRUVATE REMARK 900 DECARBOXYLASE VARIANT E477Q IN COMPLEX WITH THE SURROGATE PYRUVAMIDE REMARK 900 RELATED ID: 1PYD RELATED DB: PDB REMARK 900 PYRUVATE DECARBOXYLASE (PDC) REMARK 900 RELATED ID: 2VK8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE PYRUVATE REMARK 900 DECARBOXYLASE VARIANT E477Q IN COMPLEX WITH ITS SUBSTRATE REMARK 900 RELATED ID: 1PVD RELATED DB: PDB REMARK 900 PYRUVATE DECARBOXYLASE (PDC) REMARK 900 RELATED ID: 2VK1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE PYRUVATE REMARK 900 DECARBOXYLASE VARIANT D28A IN COMPLEX WITH ITS SUBSTRATE DBREF 1QPB A 1 563 UNP P06169 PDC1_YEAST 1 563 DBREF 1QPB B 1 563 UNP P06169 PDC1_YEAST 1 563 SEQADV 1QPB VAL A 206 UNP P06169 ALA 206 VARIANT SEQADV 1QPB ILE A 208 UNP P06169 VAL 208 VARIANT SEQADV 1QPB ALA A 336 UNP P06169 THR 336 VARIANT SEQADV 1QPB VAL A 538 UNP P06169 ILE 538 VARIANT SEQADV 1QPB VAL B 206 UNP P06169 ALA 206 VARIANT SEQADV 1QPB ILE B 208 UNP P06169 VAL 208 VARIANT SEQADV 1QPB ALA B 336 UNP P06169 THR 336 VARIANT SEQADV 1QPB VAL B 538 UNP P06169 ILE 538 VARIANT SEQRES 1 A 563 MET SER GLU ILE THR LEU GLY LYS TYR LEU PHE GLU ARG SEQRES 2 A 563 LEU LYS GLN VAL ASN VAL ASN THR VAL PHE GLY LEU PRO SEQRES 3 A 563 GLY ASP PHE ASN LEU SER LEU LEU ASP LYS ILE TYR GLU SEQRES 4 A 563 VAL GLU GLY MET ARG TRP ALA GLY ASN ALA ASN GLU LEU SEQRES 5 A 563 ASN ALA ALA TYR ALA ALA ASP GLY TYR ALA ARG ILE LYS SEQRES 6 A 563 GLY MET SER CYS ILE ILE THR THR PHE GLY VAL GLY GLU SEQRES 7 A 563 LEU SER ALA LEU ASN GLY ILE ALA GLY SER TYR ALA GLU SEQRES 8 A 563 HIS VAL GLY VAL LEU HIS VAL VAL GLY VAL PRO SER ILE SEQRES 9 A 563 SER ALA GLN ALA LYS GLN LEU LEU LEU HIS HIS THR LEU SEQRES 10 A 563 GLY ASN GLY ASP PHE THR VAL PHE HIS ARG MET SER ALA SEQRES 11 A 563 ASN ILE SER GLU THR THR ALA MET ILE THR ASP ILE ALA SEQRES 12 A 563 THR ALA PRO ALA GLU ILE ASP ARG CYS ILE ARG THR THR SEQRES 13 A 563 TYR VAL THR GLN ARG PRO VAL TYR LEU GLY LEU PRO ALA SEQRES 14 A 563 ASN LEU VAL ASP LEU ASN VAL PRO ALA LYS LEU LEU GLN SEQRES 15 A 563 THR PRO ILE ASP MET SER LEU LYS PRO ASN ASP ALA GLU SEQRES 16 A 563 SER GLU LYS GLU VAL ILE ASP THR ILE LEU VAL LEU ILE SEQRES 17 A 563 LYS ASP ALA LYS ASN PRO VAL ILE LEU ALA ASP ALA CYS SEQRES 18 A 563 CYS SER ARG HIS ASP VAL LYS ALA GLU THR LYS LYS LEU SEQRES 19 A 563 ILE ASP LEU THR GLN PHE PRO ALA PHE VAL THR PRO MET SEQRES 20 A 563 GLY LYS GLY SER ILE ASP GLU GLN HIS PRO ARG TYR GLY SEQRES 21 A 563 GLY VAL TYR VAL GLY THR LEU SER LYS PRO GLU VAL LYS SEQRES 22 A 563 GLU ALA VAL GLU SER ALA ASP LEU ILE LEU SER VAL GLY SEQRES 23 A 563 ALA LEU LEU SER ASP PHE ASN THR GLY SER PHE SER TYR SEQRES 24 A 563 SER TYR LYS THR LYS ASN ILE VAL GLU PHE HIS SER ASP SEQRES 25 A 563 HIS MET LYS ILE ARG ASN ALA THR PHE PRO GLY VAL GLN SEQRES 26 A 563 MET LYS PHE VAL LEU GLN LYS LEU LEU THR ALA ILE ALA SEQRES 27 A 563 ASP ALA ALA LYS GLY TYR LYS PRO VAL ALA VAL PRO ALA SEQRES 28 A 563 ARG THR PRO ALA ASN ALA ALA VAL PRO ALA SER THR PRO SEQRES 29 A 563 LEU LYS GLN GLU TRP MET TRP ASN GLN LEU GLY ASN PHE SEQRES 30 A 563 LEU GLN GLU GLY ASP VAL VAL ILE ALA GLU THR GLY THR SEQRES 31 A 563 SER ALA PHE GLY ILE ASN GLN THR THR PHE PRO ASN ASN SEQRES 32 A 563 THR TYR GLY ILE SER GLN VAL LEU TRP GLY SER ILE GLY SEQRES 33 A 563 PHE THR THR GLY ALA THR LEU GLY ALA ALA PHE ALA ALA SEQRES 34 A 563 GLU GLU ILE ASP PRO LYS LYS ARG VAL ILE LEU PHE ILE SEQRES 35 A 563 GLY ASP GLY SER LEU GLN LEU THR VAL GLN GLU ILE SER SEQRES 36 A 563 THR MET ILE ARG TRP GLY LEU LYS PRO TYR LEU PHE VAL SEQRES 37 A 563 LEU ASN ASN ASP GLY TYR THR ILE GLU LYS LEU ILE HIS SEQRES 38 A 563 GLY PRO LYS ALA GLN TYR ASN GLU ILE GLN GLY TRP ASP SEQRES 39 A 563 HIS LEU SER LEU LEU PRO THR PHE GLY ALA LYS ASP TYR SEQRES 40 A 563 GLU THR HIS ARG VAL ALA THR THR GLY GLU TRP ASP LYS SEQRES 41 A 563 LEU THR GLN ASP LYS SER PHE ASN ASP ASN SER LYS ILE SEQRES 42 A 563 ARG MET ILE GLU VAL MET LEU PRO VAL PHE ASP ALA PRO SEQRES 43 A 563 GLN ASN LEU VAL GLU GLN ALA LYS LEU THR ALA ALA THR SEQRES 44 A 563 ASN ALA LYS GLN SEQRES 1 B 563 MET SER GLU ILE THR LEU GLY LYS TYR LEU PHE GLU ARG SEQRES 2 B 563 LEU LYS GLN VAL ASN VAL ASN THR VAL PHE GLY LEU PRO SEQRES 3 B 563 GLY ASP PHE ASN LEU SER LEU LEU ASP LYS ILE TYR GLU SEQRES 4 B 563 VAL GLU GLY MET ARG TRP ALA GLY ASN ALA ASN GLU LEU SEQRES 5 B 563 ASN ALA ALA TYR ALA ALA ASP GLY TYR ALA ARG ILE LYS SEQRES 6 B 563 GLY MET SER CYS ILE ILE THR THR PHE GLY VAL GLY GLU SEQRES 7 B 563 LEU SER ALA LEU ASN GLY ILE ALA GLY SER TYR ALA GLU SEQRES 8 B 563 HIS VAL GLY VAL LEU HIS VAL VAL GLY VAL PRO SER ILE SEQRES 9 B 563 SER ALA GLN ALA LYS GLN LEU LEU LEU HIS HIS THR LEU SEQRES 10 B 563 GLY ASN GLY ASP PHE THR VAL PHE HIS ARG MET SER ALA SEQRES 11 B 563 ASN ILE SER GLU THR THR ALA MET ILE THR ASP ILE ALA SEQRES 12 B 563 THR ALA PRO ALA GLU ILE ASP ARG CYS ILE ARG THR THR SEQRES 13 B 563 TYR VAL THR GLN ARG PRO VAL TYR LEU GLY LEU PRO ALA SEQRES 14 B 563 ASN LEU VAL ASP LEU ASN VAL PRO ALA LYS LEU LEU GLN SEQRES 15 B 563 THR PRO ILE ASP MET SER LEU LYS PRO ASN ASP ALA GLU SEQRES 16 B 563 SER GLU LYS GLU VAL ILE ASP THR ILE LEU VAL LEU ILE SEQRES 17 B 563 LYS ASP ALA LYS ASN PRO VAL ILE LEU ALA ASP ALA CYS SEQRES 18 B 563 CYS SER ARG HIS ASP VAL LYS ALA GLU THR LYS LYS LEU SEQRES 19 B 563 ILE ASP LEU THR GLN PHE PRO ALA PHE VAL THR PRO MET SEQRES 20 B 563 GLY LYS GLY SER ILE ASP GLU GLN HIS PRO ARG TYR GLY SEQRES 21 B 563 GLY VAL TYR VAL GLY THR LEU SER LYS PRO GLU VAL LYS SEQRES 22 B 563 GLU ALA VAL GLU SER ALA ASP LEU ILE LEU SER VAL GLY SEQRES 23 B 563 ALA LEU LEU SER ASP PHE ASN THR GLY SER PHE SER TYR SEQRES 24 B 563 SER TYR LYS THR LYS ASN ILE VAL GLU PHE HIS SER ASP SEQRES 25 B 563 HIS MET LYS ILE ARG ASN ALA THR PHE PRO GLY VAL GLN SEQRES 26 B 563 MET LYS PHE VAL LEU GLN LYS LEU LEU THR ALA ILE ALA SEQRES 27 B 563 ASP ALA ALA LYS GLY TYR LYS PRO VAL ALA VAL PRO ALA SEQRES 28 B 563 ARG THR PRO ALA ASN ALA ALA VAL PRO ALA SER THR PRO SEQRES 29 B 563 LEU LYS GLN GLU TRP MET TRP ASN GLN LEU GLY ASN PHE SEQRES 30 B 563 LEU GLN GLU GLY ASP VAL VAL ILE ALA GLU THR GLY THR SEQRES 31 B 563 SER ALA PHE GLY ILE ASN GLN THR THR PHE PRO ASN ASN SEQRES 32 B 563 THR TYR GLY ILE SER GLN VAL LEU TRP GLY SER ILE GLY SEQRES 33 B 563 PHE THR THR GLY ALA THR LEU GLY ALA ALA PHE ALA ALA SEQRES 34 B 563 GLU GLU ILE ASP PRO LYS LYS ARG VAL ILE LEU PHE ILE SEQRES 35 B 563 GLY ASP GLY SER LEU GLN LEU THR VAL GLN GLU ILE SER SEQRES 36 B 563 THR MET ILE ARG TRP GLY LEU LYS PRO TYR LEU PHE VAL SEQRES 37 B 563 LEU ASN ASN ASP GLY TYR THR ILE GLU LYS LEU ILE HIS SEQRES 38 B 563 GLY PRO LYS ALA GLN TYR ASN GLU ILE GLN GLY TRP ASP SEQRES 39 B 563 HIS LEU SER LEU LEU PRO THR PHE GLY ALA LYS ASP TYR SEQRES 40 B 563 GLU THR HIS ARG VAL ALA THR THR GLY GLU TRP ASP LYS SEQRES 41 B 563 LEU THR GLN ASP LYS SER PHE ASN ASP ASN SER LYS ILE SEQRES 42 B 563 ARG MET ILE GLU VAL MET LEU PRO VAL PHE ASP ALA PRO SEQRES 43 B 563 GLN ASN LEU VAL GLU GLN ALA LYS LEU THR ALA ALA THR SEQRES 44 B 563 ASN ALA LYS GLN HET TPP A 600 26 HET MG A 601 1 HET PYM A 602 6 HET TPP B 600 26 HET MG B 601 1 HET PYM B 602 6 HETNAM TPP THIAMINE DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PYM PYRUVAMIDE FORMUL 3 TPP 2(C12 H19 N4 O7 P2 S 1+) FORMUL 4 MG 2(MG 2+) FORMUL 5 PYM 2(C3 H5 N O2) FORMUL 9 HOH *141(H2 O) HELIX 1 1 LEU A 6 VAL A 17 1 12 HELIX 2 2 ASN A 30 TYR A 38 1 9 HELIX 3 3 ASN A 50 GLY A 66 1 17 HELIX 4 4 GLY A 75 ALA A 81 1 7 HELIX 5 5 ALA A 81 GLU A 91 1 11 HELIX 6 6 THR A 123 ASN A 131 1 9 HELIX 7 7 ASP A 141 ALA A 143 5 3 HELIX 8 8 THR A 144 GLN A 160 1 17 HELIX 9 9 ALA A 169 ASP A 173 1 5 HELIX 10 10 LYS A 179 THR A 183 5 5 HELIX 11 11 ASP A 193 ALA A 211 1 19 HELIX 12 12 ALA A 220 SER A 223 5 4 HELIX 13 13 VAL A 227 GLN A 239 1 13 HELIX 14 14 VAL A 264 SER A 268 5 5 HELIX 15 15 LYS A 269 SER A 278 1 10 HELIX 16 16 GLN A 325 ALA A 338 1 14 HELIX 17 17 ASP A 339 LYS A 342 5 4 HELIX 18 18 LYS A 366 LEU A 378 1 13 HELIX 19 19 GLY A 389 ILE A 395 1 7 HELIX 20 20 ASN A 396 THR A 398 5 3 HELIX 21 21 GLY A 416 ASP A 433 1 18 HELIX 22 22 ASP A 444 VAL A 451 1 8 HELIX 23 23 GLU A 453 TRP A 460 1 8 HELIX 24 24 TYR A 474 LEU A 479 1 6 HELIX 25 25 ALA A 485 GLU A 489 5 5 HELIX 26 26 SER A 497 PHE A 502 1 6 HELIX 27 27 THR A 514 GLN A 523 1 10 HELIX 28 28 ASN A 548 THR A 556 1 9 HELIX 29 29 LEU B 6 VAL B 17 1 12 HELIX 30 30 ASN B 30 TYR B 38 1 9 HELIX 31 31 ASN B 50 GLY B 66 1 17 HELIX 32 32 GLY B 77 GLU B 91 1 15 HELIX 33 33 THR B 123 ASN B 131 1 9 HELIX 34 34 THR B 144 GLN B 160 1 17 HELIX 35 35 ALA B 169 ASP B 173 1 5 HELIX 36 36 LYS B 179 THR B 183 5 5 HELIX 37 37 ASP B 193 ALA B 211 1 19 HELIX 38 38 ALA B 220 SER B 223 5 4 HELIX 39 39 VAL B 227 GLN B 239 1 13 HELIX 40 40 VAL B 264 SER B 268 5 5 HELIX 41 41 LYS B 269 ALA B 279 1 11 HELIX 42 42 GLN B 325 LYS B 342 1 18 HELIX 43 43 LYS B 366 LEU B 374 1 9 HELIX 44 44 GLY B 375 PHE B 377 5 3 HELIX 45 45 GLY B 389 ILE B 395 1 7 HELIX 46 46 ASN B 396 THR B 398 5 3 HELIX 47 47 GLY B 416 ASP B 433 1 18 HELIX 48 48 ASP B 444 VAL B 451 1 8 HELIX 49 49 GLU B 453 TRP B 460 1 8 HELIX 50 50 TYR B 474 HIS B 481 1 8 HELIX 51 51 ALA B 485 GLU B 489 5 5 HELIX 52 52 SER B 497 PHE B 502 1 6 HELIX 53 53 THR B 514 ASP B 524 1 11 HELIX 54 54 PRO B 546 THR B 556 1 11 SHEET 1 A 2 GLU A 3 THR A 5 0 SHEET 2 A 2 ASN A 175 PRO A 177 -1 N VAL A 176 O ILE A 4 SHEET 1 B 4 SER A 68 THR A 73 0 SHEET 2 B 4 VAL A 95 VAL A 101 1 N LEU A 96 O SER A 68 SHEET 3 B 4 VAL A 163 PRO A 168 1 N VAL A 163 O HIS A 97 SHEET 4 B 4 THR A 135 MET A 138 1 N THR A 135 O TYR A 164 SHEET 1 C 7 TYR A 259 TYR A 263 0 SHEET 2 C 7 PRO A 241 THR A 245 1 N ALA A 242 O GLY A 260 SHEET 3 C 7 PRO A 214 ALA A 218 1 N ILE A 216 O PRO A 241 SHEET 4 C 7 LEU A 281 VAL A 285 1 N LEU A 281 O VAL A 215 SHEET 5 C 7 ILE A 306 PHE A 309 1 N VAL A 307 O ILE A 282 SHEET 6 C 7 HIS A 313 ILE A 316 -1 N LYS A 315 O GLU A 308 SHEET 7 C 7 ALA A 319 PRO A 322 -1 N PHE A 321 O MET A 314 SHEET 1 D 6 TYR A 405 ILE A 407 0 SHEET 2 D 6 VAL A 383 ALA A 386 1 N VAL A 384 O TYR A 405 SHEET 3 D 6 VAL A 438 GLY A 443 1 N ILE A 439 O VAL A 383 SHEET 4 D 6 TYR A 465 ASN A 470 1 N TYR A 465 O LEU A 440 SHEET 5 D 6 ILE A 533 MET A 539 1 N ARG A 534 O LEU A 466 SHEET 6 D 6 TYR A 507 VAL A 512 1 N GLU A 508 O ILE A 533 SHEET 1 E 2 GLU B 3 THR B 5 0 SHEET 2 E 2 ASN B 175 PRO B 177 -1 N VAL B 176 O ILE B 4 SHEET 1 F 5 VAL B 22 GLY B 24 0 SHEET 2 F 5 SER B 68 THR B 73 1 N CYS B 69 O PHE B 23 SHEET 3 F 5 VAL B 95 VAL B 101 1 N LEU B 96 O SER B 68 SHEET 4 F 5 VAL B 163 PRO B 168 1 N VAL B 163 O HIS B 97 SHEET 5 F 5 THR B 135 MET B 138 1 N THR B 135 O TYR B 164 SHEET 1 G 7 TYR B 259 TYR B 263 0 SHEET 2 G 7 PRO B 241 THR B 245 1 N ALA B 242 O GLY B 260 SHEET 3 G 7 PRO B 214 ALA B 218 1 N ILE B 216 O PRO B 241 SHEET 4 G 7 LEU B 281 VAL B 285 1 N LEU B 281 O VAL B 215 SHEET 5 G 7 ILE B 306 PHE B 309 1 N VAL B 307 O ILE B 282 SHEET 6 G 7 HIS B 313 ILE B 316 -1 N LYS B 315 O GLU B 308 SHEET 7 G 7 ALA B 319 PRO B 322 -1 N PHE B 321 O MET B 314 SHEET 1 H 6 TYR B 405 ILE B 407 0 SHEET 2 H 6 VAL B 383 ALA B 386 1 N VAL B 384 O TYR B 405 SHEET 3 H 6 VAL B 438 GLY B 443 1 N ILE B 439 O VAL B 383 SHEET 4 H 6 TYR B 465 ASN B 470 1 N TYR B 465 O LEU B 440 SHEET 5 H 6 ILE B 533 MET B 539 1 N ARG B 534 O LEU B 466 SHEET 6 H 6 TYR B 507 VAL B 512 1 N GLU B 508 O ILE B 533 LINK OD1 ASP A 444 MG MG A 601 1555 1555 2.51 LINK OD1 ASN A 471 MG MG A 601 1555 1555 2.15 LINK ND2 ASN A 471 MG MG A 601 1555 1555 3.04 LINK O GLY A 473 MG MG A 601 1555 1555 2.04 LINK O1A TPP A 600 MG MG A 601 1555 1555 2.52 LINK O3B TPP A 600 MG MG A 601 1555 1555 2.35 LINK MG MG A 601 O HOH A2077 1555 1555 2.41 LINK OD1 ASP B 444 MG MG B 601 1555 1555 2.57 LINK OD1 ASN B 471 MG MG B 601 1555 1555 2.18 LINK O GLY B 473 MG MG B 601 1555 1555 2.00 LINK O1A TPP B 600 MG MG B 601 1555 1555 2.59 LINK O3B TPP B 600 MG MG B 601 1555 1555 2.40 LINK MG MG B 601 O HOH B2043 1555 1555 2.48 SITE 1 AC1 5 ASP A 444 ASN A 471 GLY A 473 TPP A 600 SITE 2 AC1 5 HOH A2077 SITE 1 AC2 6 ASP B 444 ASN B 471 GLY B 473 THR B 475 SITE 2 AC2 6 TPP B 600 HOH B2043 SITE 1 AC3 20 THR A 390 GLY A 413 ILE A 415 GLY A 443 SITE 2 AC3 20 ASP A 444 GLY A 445 SER A 446 ASN A 471 SITE 3 AC3 20 GLY A 473 TYR A 474 THR A 475 ILE A 476 SITE 4 AC3 20 GLU A 477 MG A 601 HOH A2077 HOH A2084 SITE 5 AC3 20 PRO B 26 GLU B 51 VAL B 76 PYM B 602 SITE 1 AC4 19 PRO A 26 GLU A 51 VAL A 76 GLY B 389 SITE 2 AC4 19 THR B 390 GLY B 413 SER B 414 ILE B 415 SITE 3 AC4 19 GLY B 443 ASP B 444 GLY B 445 SER B 446 SITE 4 AC4 19 ASN B 471 GLY B 473 TYR B 474 THR B 475 SITE 5 AC4 19 ILE B 476 MG B 601 HOH B2043 SITE 1 AC5 6 GLU A 477 TPP A 600 HOH A2085 ASP B 28 SITE 2 AC5 6 HIS B 114 HIS B 115 SITE 1 AC6 5 TYR A 157 VAL A 158 ARG A 224 HIS A 225 SITE 2 AC6 5 ASP A 226 CRYST1 145.049 119.700 81.283 90.00 120.21 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006894 0.000000 0.004014 0.00000 SCALE2 0.000000 0.008354 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014236 0.00000 TER 4276 THR A 556 TER 8552 THR B 556 HETATM 8553 N1' TPP A 600 87.173 50.814 17.324 1.00 24.21 N HETATM 8554 C2' TPP A 600 87.876 51.283 16.243 1.00 26.97 C HETATM 8555 CM2 TPP A 600 88.670 50.339 15.434 1.00 28.47 C HETATM 8556 N3' TPP A 600 87.724 52.543 15.825 1.00 27.98 N HETATM 8557 C4' TPP A 600 86.930 53.419 16.544 1.00 27.03 C HETATM 8558 N4' TPP A 600 86.856 54.632 16.032 1.00 27.22 N HETATM 8559 C5' TPP A 600 86.336 53.027 17.836 1.00 25.93 C HETATM 8560 C6' TPP A 600 86.421 51.671 18.102 1.00 24.04 C HETATM 8561 C7' TPP A 600 85.557 53.940 18.782 1.00 24.24 C HETATM 8562 N3 TPP A 600 86.350 55.022 19.525 1.00 24.16 N HETATM 8563 C2 TPP A 600 86.497 56.213 19.016 1.00 24.05 C HETATM 8564 S1 TPP A 600 87.480 57.224 19.845 1.00 23.92 S HETATM 8565 C5 TPP A 600 87.748 55.974 20.981 1.00 23.69 C HETATM 8566 C4 TPP A 600 87.045 54.848 20.669 1.00 24.17 C HETATM 8567 CM4 TPP A 600 87.133 53.510 21.419 1.00 21.60 C HETATM 8568 C6 TPP A 600 88.735 56.175 22.074 1.00 25.12 C HETATM 8569 C7 TPP A 600 90.131 56.636 21.720 1.00 25.43 C HETATM 8570 O7 TPP A 600 90.644 56.940 23.063 1.00 27.03 O HETATM 8571 PA TPP A 600 91.980 57.723 23.388 1.00 24.72 P HETATM 8572 O1A TPP A 600 92.222 57.434 24.831 1.00 18.83 O HETATM 8573 O2A TPP A 600 93.032 57.388 22.368 1.00 21.45 O HETATM 8574 O3A TPP A 600 91.220 59.087 23.236 1.00 23.73 O HETATM 8575 PB TPP A 600 91.094 60.483 23.881 1.00 23.19 P HETATM 8576 O1B TPP A 600 92.345 61.234 23.618 1.00 21.37 O HETATM 8577 O2B TPP A 600 89.880 61.044 23.211 1.00 23.46 O HETATM 8578 O3B TPP A 600 90.790 60.206 25.275 1.00 24.32 O HETATM 8579 MG MG A 601 92.169 59.032 26.774 1.00 26.69 MG HETATM 8580 C1 PYM A 602 99.189 61.292 -8.790 1.00 52.08 C HETATM 8581 N1 PYM A 602 98.626 61.153 -7.619 1.00 50.63 N HETATM 8582 O1 PYM A 602 100.460 61.503 -8.876 1.00 50.70 O HETATM 8583 C2 PYM A 602 98.382 61.237 -9.966 1.00 53.00 C HETATM 8584 O2 PYM A 602 97.165 61.042 -10.023 1.00 54.12 O HETATM 8585 C3 PYM A 602 98.715 61.348 -11.267 1.00 54.16 C HETATM 8586 N1' TPP B 600 99.126 35.345 9.020 1.00 20.82 N HETATM 8587 C2' TPP B 600 98.087 34.887 9.788 1.00 22.78 C HETATM 8588 CM2 TPP B 600 96.981 35.787 10.115 1.00 22.86 C HETATM 8589 N3' TPP B 600 97.975 33.625 10.059 1.00 21.87 N HETATM 8590 C4' TPP B 600 99.016 32.746 9.803 1.00 23.24 C HETATM 8591 N4' TPP B 600 98.753 31.480 10.129 1.00 23.12 N HETATM 8592 C5' TPP B 600 100.236 33.179 9.122 1.00 21.78 C HETATM 8593 C6' TPP B 600 100.191 34.501 8.691 1.00 22.05 C HETATM 8594 C7' TPP B 600 101.380 32.257 8.682 1.00 19.91 C HETATM 8595 N3 TPP B 600 102.248 31.634 9.794 1.00 15.82 N HETATM 8596 C2 TPP B 600 102.076 30.370 10.185 1.00 13.34 C HETATM 8597 S1 TPP B 600 103.091 29.968 11.425 1.00 17.15 S HETATM 8598 C5 TPP B 600 103.748 31.492 11.463 1.00 11.29 C HETATM 8599 C4 TPP B 600 103.249 32.291 10.491 1.00 14.23 C HETATM 8600 CM4 TPP B 600 103.628 33.763 10.250 1.00 13.31 C HETATM 8601 C6 TPP B 600 104.733 31.781 12.490 1.00 13.40 C HETATM 8602 C7 TPP B 600 104.395 31.301 13.969 1.00 14.30 C HETATM 8603 O7 TPP B 600 105.712 31.253 14.620 1.00 14.61 O HETATM 8604 PA TPP B 600 105.898 30.938 16.192 1.00 17.42 P HETATM 8605 O1A TPP B 600 107.281 31.389 16.295 1.00 18.75 O HETATM 8606 O2A TPP B 600 104.981 31.516 17.193 1.00 12.64 O HETATM 8607 O3A TPP B 600 105.806 29.331 16.065 1.00 19.62 O HETATM 8608 PB TPP B 600 106.900 28.128 16.194 1.00 20.36 P HETATM 8609 O1B TPP B 600 106.769 27.797 17.642 1.00 19.51 O HETATM 8610 O2B TPP B 600 106.429 27.075 15.253 1.00 20.38 O HETATM 8611 O3B TPP B 600 108.168 28.761 15.764 1.00 16.25 O HETATM 8612 MG MG B 601 109.581 30.356 16.874 1.00 71.47 MG HETATM 8613 C1 PYM B 602 82.999 56.886 17.236 1.00 45.94 C HETATM 8614 N1 PYM B 602 82.026 57.057 18.054 1.00 44.72 N HETATM 8615 O1 PYM B 602 83.236 55.719 16.744 1.00 46.16 O HETATM 8616 C2 PYM B 602 83.787 57.991 16.890 1.00 46.38 C HETATM 8617 O2 PYM B 602 83.645 59.140 17.302 1.00 46.56 O HETATM 8618 C3 PYM B 602 84.847 58.111 16.079 1.00 46.49 C HETATM 8619 O HOH A2001 116.691 37.130 -12.382 1.00 29.05 O HETATM 8620 O HOH A2002 117.200 44.218 -10.309 1.00 54.79 O HETATM 8621 O HOH A2003 113.714 47.853 -13.869 1.00 25.97 O HETATM 8622 O HOH A2004 113.011 53.107 -6.270 1.00 32.41 O HETATM 8623 O HOH A2005 106.204 43.420 5.261 1.00 33.14 O HETATM 8624 O HOH A2006 113.182 34.868 -8.724 1.00 63.82 O HETATM 8625 O HOH A2007 114.728 50.317 1.172 1.00 32.99 O HETATM 8626 O HOH A2008 105.250 58.351 -6.237 1.00 30.45 O HETATM 8627 O HOH A2009 105.316 55.290 -4.189 1.00 54.02 O HETATM 8628 O HOH A2010 78.100 67.179 -21.053 1.00 32.84 O HETATM 8629 O HOH A2011 99.734 37.346 5.703 1.00 21.98 O HETATM 8630 O HOH A2012 96.160 39.061 11.952 1.00 21.65 O HETATM 8631 O HOH A2013 90.630 43.965 9.199 1.00 39.15 O HETATM 8632 O HOH A2014 91.588 52.138 7.725 1.00 54.23 O HETATM 8633 O HOH A2015 95.280 49.440 3.690 1.00 47.04 O HETATM 8634 O HOH A2016 92.564 56.470 5.689 1.00 46.94 O HETATM 8635 O HOH A2017 85.251 60.018 -4.183 1.00 66.03 O HETATM 8636 O HOH A2018 87.733 23.745 2.221 1.00 47.70 O HETATM 8637 O HOH A2019 79.533 27.561 -1.318 1.00 33.34 O HETATM 8638 O HOH A2020 89.587 39.959 1.179 1.00 21.91 O HETATM 8639 O HOH A2021 88.510 42.658 -12.167 1.00 43.60 O HETATM 8640 O HOH A2022 91.979 38.457 -13.163 1.00 67.06 O HETATM 8641 O HOH A2023 94.454 36.367 -15.081 1.00 40.74 O HETATM 8642 O HOH A2024 103.197 25.912 -12.661 1.00 32.33 O HETATM 8643 O HOH A2025 108.803 29.340 -17.239 1.00 30.63 O HETATM 8644 O HOH A2026 82.852 62.608 -23.658 1.00 25.58 O HETATM 8645 O HOH A2027 80.191 67.662 -23.731 1.00 32.72 O HETATM 8646 O HOH A2028 75.357 69.814 -20.804 1.00 30.50 O HETATM 8647 O HOH A2029 85.283 88.244 -9.240 1.00 12.38 O HETATM 8648 O HOH A2030 84.049 89.600 -11.609 1.00 47.53 O HETATM 8649 O HOH A2031 76.263 85.743 -7.527 1.00 62.29 O HETATM 8650 O HOH A2032 83.653 91.657 -1.506 1.00 35.20 O HETATM 8651 O HOH A2033 93.938 63.862 2.800 1.00 24.68 O HETATM 8652 O HOH A2034 91.680 60.046 -6.190 1.00 23.10 O HETATM 8653 O HOH A2035 95.614 64.169 -11.369 1.00 48.56 O HETATM 8654 O HOH A2036 101.174 64.896 -5.659 1.00 39.99 O HETATM 8655 O HOH A2037 105.921 67.153 -10.773 1.00 46.30 O HETATM 8656 O HOH A2038 101.383 80.386 -3.688 1.00 46.70 O HETATM 8657 O HOH A2039 103.513 80.456 -6.281 1.00 57.97 O HETATM 8658 O HOH A2040 94.577 66.625 7.355 1.00 46.45 O HETATM 8659 O HOH A2041 97.408 73.546 5.350 1.00 60.73 O HETATM 8660 O HOH A2042 96.031 76.934 10.659 1.00 59.04 O HETATM 8661 O HOH A2043 97.422 86.063 6.687 1.00 39.70 O HETATM 8662 O HOH A2044 82.439 78.891 14.947 1.00 46.00 O HETATM 8663 O HOH A2045 90.670 76.112 14.817 1.00 37.57 O HETATM 8664 O HOH A2046 80.000 86.376 8.011 1.00 52.55 O HETATM 8665 O HOH A2047 75.853 67.144 16.509 1.00 61.15 O HETATM 8666 O HOH A2048 78.918 73.529 10.303 1.00 47.01 O HETATM 8667 O HOH A2049 68.774 72.895 0.674 1.00 26.57 O HETATM 8668 O HOH A2050 79.006 70.989 -6.370 1.00 60.04 O HETATM 8669 O HOH A2051 92.945 65.275 -11.740 1.00 45.38 O HETATM 8670 O HOH A2052 74.962 67.043 -3.707 1.00 53.87 O HETATM 8671 O HOH A2053 76.858 66.938 -18.169 1.00 32.51 O HETATM 8672 O HOH A2054 75.084 63.121 -16.235 1.00 58.19 O HETATM 8673 O HOH A2055 86.629 64.043 -19.718 1.00 35.73 O HETATM 8674 O HOH A2056 90.082 61.199 -18.831 1.00 46.47 O HETATM 8675 O HOH A2057 88.473 91.884 -12.957 1.00 60.40 O HETATM 8676 O HOH A2058 95.685 87.835 8.832 1.00 31.33 O HETATM 8677 O HOH A2059 105.034 83.470 26.539 1.00 31.26 O HETATM 8678 O HOH A2060 100.538 76.274 17.374 1.00 53.41 O HETATM 8679 O HOH A2061 112.817 71.906 16.016 1.00 27.63 O HETATM 8680 O HOH A2062 92.418 57.074 12.755 1.00 67.77 O HETATM 8681 O HOH A2063 88.116 62.658 15.312 1.00 66.02 O HETATM 8682 O HOH A2064 90.600 67.039 12.558 1.00 14.70 O HETATM 8683 O HOH A2065 101.975 73.040 5.104 1.00 46.75 O HETATM 8684 O HOH A2066 97.651 62.936 5.180 1.00 59.48 O HETATM 8685 O HOH A2067 93.064 62.143 5.888 1.00 45.55 O HETATM 8686 O HOH A2068 94.233 59.569 12.198 1.00 35.80 O HETATM 8687 O HOH A2069 92.489 49.372 15.435 1.00 39.31 O HETATM 8688 O HOH A2070 96.074 45.647 15.934 1.00 19.63 O HETATM 8689 O HOH A2071 108.590 43.584 14.736 1.00 31.07 O HETATM 8690 O HOH A2072 108.945 40.200 13.818 1.00 19.20 O HETATM 8691 O HOH A2073 115.753 51.330 8.480 1.00 15.26 O HETATM 8692 O HOH A2074 111.551 61.851 14.033 1.00 12.56 O HETATM 8693 O HOH A2075 96.545 60.376 33.817 1.00 46.79 O HETATM 8694 O HOH A2076 97.260 55.389 33.802 1.00 47.89 O HETATM 8695 O HOH A2077 93.877 59.500 25.141 1.00 10.23 O HETATM 8696 O HOH A2078 90.715 52.094 35.086 1.00 31.62 O HETATM 8697 O HOH A2079 97.024 52.677 28.130 1.00 24.23 O HETATM 8698 O HOH A2080 108.097 65.148 35.378 1.00 31.64 O HETATM 8699 O HOH A2081 81.872 68.956 27.960 1.00 50.16 O HETATM 8700 O HOH A2082 75.038 72.154 19.261 1.00 42.53 O HETATM 8701 O HOH A2083 71.894 69.010 25.580 1.00 61.69 O HETATM 8702 O HOH A2084 93.239 59.992 20.972 1.00 52.23 O HETATM 8703 O HOH A2085 81.127 60.249 18.072 1.00 44.33 O HETATM 8704 O HOH B2001 53.716 46.769 29.628 1.00 44.56 O HETATM 8705 O HOH B2002 60.247 37.027 22.011 1.00 41.33 O HETATM 8706 O HOH B2003 75.834 27.099 33.163 1.00 43.76 O HETATM 8707 O HOH B2004 80.628 35.620 25.056 1.00 61.45 O HETATM 8708 O HOH B2005 83.958 48.357 18.715 1.00 32.06 O HETATM 8709 O HOH B2006 76.826 41.520 38.047 1.00 37.20 O HETATM 8710 O HOH B2007 81.163 44.541 33.703 1.00 38.43 O HETATM 8711 O HOH B2008 85.438 48.970 27.023 1.00 31.09 O HETATM 8712 O HOH B2009 87.984 48.898 25.440 1.00 16.42 O HETATM 8713 O HOH B2010 95.712 37.091 14.397 1.00 34.10 O HETATM 8714 O HOH B2011 75.857 28.463 26.083 1.00 43.65 O HETATM 8715 O HOH B2012 89.004 33.084 15.529 1.00 43.83 O HETATM 8716 O HOH B2013 87.957 28.559 15.027 1.00 54.12 O HETATM 8717 O HOH B2014 80.457 39.397 11.309 1.00 34.06 O HETATM 8718 O HOH B2015 70.584 59.937 14.525 1.00 42.07 O HETATM 8719 O HOH B2016 67.116 54.847 6.137 1.00 67.13 O HETATM 8720 O HOH B2017 64.058 63.979 2.545 1.00 39.09 O HETATM 8721 O HOH B2018 79.794 53.447 2.897 1.00 38.18 O HETATM 8722 O HOH B2019 72.977 51.775 1.467 1.00 36.90 O HETATM 8723 O HOH B2020 58.753 52.059 22.997 1.00 32.34 O HETATM 8724 O HOH B2021 58.789 34.780 24.141 1.00 26.62 O HETATM 8725 O HOH B2022 62.678 31.919 29.810 1.00 21.17 O HETATM 8726 O HOH B2023 87.097 -1.871 28.182 1.00 50.72 O HETATM 8727 O HOH B2024 87.616 18.604 20.008 1.00 46.21 O HETATM 8728 O HOH B2025 91.125 12.871 22.924 1.00 49.24 O HETATM 8729 O HOH B2026 99.750 9.295 19.602 1.00 37.06 O HETATM 8730 O HOH B2027 100.564 9.074 16.139 1.00 57.68 O HETATM 8731 O HOH B2028 98.002 -1.067 15.731 1.00 63.99 O HETATM 8732 O HOH B2029 82.757 18.484 6.679 1.00 44.72 O HETATM 8733 O HOH B2030 99.303 22.968 6.543 1.00 67.30 O HETATM 8734 O HOH B2031 71.620 0.685 24.040 1.00 64.02 O HETATM 8735 O HOH B2032 76.559 -3.088 21.568 1.00 66.57 O HETATM 8736 O HOH B2033 78.599 -10.785 17.671 1.00 60.04 O HETATM 8737 O HOH B2034 95.053 3.740 29.267 1.00 48.38 O HETATM 8738 O HOH B2035 105.630 18.123 33.425 1.00 35.77 O HETATM 8739 O HOH B2036 95.647 29.165 15.572 1.00 34.74 O HETATM 8740 O HOH B2037 100.537 24.254 13.531 1.00 33.20 O HETATM 8741 O HOH B2038 90.620 21.901 19.477 1.00 27.94 O HETATM 8742 O HOH B2039 95.233 27.037 17.525 1.00 31.53 O HETATM 8743 O HOH B2040 88.911 28.978 36.103 1.00 40.39 O HETATM 8744 O HOH B2041 94.733 28.311 35.111 1.00 57.35 O HETATM 8745 O HOH B2042 103.432 28.606 18.391 1.00 64.32 O HETATM 8746 O HOH B2043 107.811 29.937 18.554 1.00 13.77 O HETATM 8747 O HOH B2044 85.382 47.479 31.531 1.00 47.37 O HETATM 8748 O HOH B2045 87.298 45.682 35.125 1.00 31.22 O HETATM 8749 O HOH B2046 109.297 25.097 -0.238 1.00 53.42 O HETATM 8750 O HOH B2047 117.807 30.865 10.153 1.00 33.52 O HETATM 8751 O HOH B2048 117.068 30.770 4.149 1.00 26.36 O HETATM 8752 O HOH B2049 109.050 39.330 8.426 1.00 63.44 O HETATM 8753 O HOH B2050 111.866 37.676 28.146 1.00 56.42 O HETATM 8754 O HOH B2051 103.433 39.532 42.921 1.00 37.57 O HETATM 8755 O HOH B2052 104.474 29.584 42.826 1.00 65.32 O HETATM 8756 O HOH B2053 112.583 26.221 37.359 1.00 59.92 O HETATM 8757 O HOH B2054 105.584 17.724 37.003 1.00 60.14 O HETATM 8758 O HOH B2055 107.845 15.220 36.842 1.00 25.61 O HETATM 8759 O HOH B2056 111.889 25.153 19.335 1.00 25.14 O CONECT 3368 8579 CONECT 3587 8579 CONECT 3588 8579 CONECT 3600 8579 CONECT 7644 8612 CONECT 7863 8612 CONECT 7876 8612 CONECT 8553 8554 8560 CONECT 8554 8553 8555 8556 CONECT 8555 8554 CONECT 8556 8554 8557 CONECT 8557 8556 8558 8559 CONECT 8558 8557 CONECT 8559 8557 8560 8561 CONECT 8560 8553 8559 CONECT 8561 8559 8562 CONECT 8562 8561 8563 8566 CONECT 8563 8562 8564 CONECT 8564 8563 8565 CONECT 8565 8564 8566 8568 CONECT 8566 8562 8565 8567 CONECT 8567 8566 CONECT 8568 8565 8569 CONECT 8569 8568 8570 CONECT 8570 8569 8571 CONECT 8571 8570 8572 8573 8574 CONECT 8572 8571 8579 CONECT 8573 8571 CONECT 8574 8571 8575 CONECT 8575 8574 8576 8577 8578 CONECT 8576 8575 CONECT 8577 8575 CONECT 8578 8575 8579 CONECT 8579 3368 3587 3588 3600 CONECT 8579 8572 8578 8695 CONECT 8580 8581 8582 8583 CONECT 8581 8580 CONECT 8582 8580 CONECT 8583 8580 8584 8585 CONECT 8584 8583 CONECT 8585 8583 CONECT 8586 8587 8593 CONECT 8587 8586 8588 8589 CONECT 8588 8587 CONECT 8589 8587 8590 CONECT 8590 8589 8591 8592 CONECT 8591 8590 CONECT 8592 8590 8593 8594 CONECT 8593 8586 8592 CONECT 8594 8592 8595 CONECT 8595 8594 8596 8599 CONECT 8596 8595 8597 CONECT 8597 8596 8598 CONECT 8598 8597 8599 8601 CONECT 8599 8595 8598 8600 CONECT 8600 8599 CONECT 8601 8598 8602 CONECT 8602 8601 8603 CONECT 8603 8602 8604 CONECT 8604 8603 8605 8606 8607 CONECT 8605 8604 8612 CONECT 8606 8604 CONECT 8607 8604 8608 CONECT 8608 8607 8609 8610 8611 CONECT 8609 8608 CONECT 8610 8608 CONECT 8611 8608 8612 CONECT 8612 7644 7863 7876 8605 CONECT 8612 8611 8746 CONECT 8613 8614 8615 8616 CONECT 8614 8613 CONECT 8615 8613 CONECT 8616 8613 8617 8618 CONECT 8617 8616 CONECT 8618 8616 CONECT 8695 8579 CONECT 8746 8612 MASTER 443 0 6 54 39 0 18 6 8757 2 77 88 END