data_1QPS # _entry.id 1QPS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QPS pdb_00001qps 10.2210/pdb1qps/pdb NDB PD0055 ? ? RCSB RCSB009121 ? ? WWPDB D_1000009121 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-01-11 5 'Structure model' 1 4 2017-10-04 6 'Structure model' 1 5 2018-01-31 7 'Structure model' 1 6 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Other 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Experimental preparation' 6 7 'Structure model' 'Data collection' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' exptl_crystal_grow 3 7 'Structure model' chem_comp_atom 4 7 'Structure model' chem_comp_bond 5 7 'Structure model' database_2 6 7 'Structure model' pdbx_struct_conn_angle 7 7 'Structure model' struct_conn 8 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.name' 2 6 'Structure model' '_exptl_crystal_grow.pdbx_details' 3 6 'Structure model' '_exptl_crystal_grow.temp' 4 7 'Structure model' '_database_2.pdbx_DOI' 5 7 'Structure model' '_database_2.pdbx_database_accession' 6 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 7 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 7 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 7 'Structure model' '_pdbx_struct_conn_angle.value' 21 7 'Structure model' '_struct_conn.pdbx_dist_value' 22 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QPS _pdbx_database_status.recvd_initial_deposition_date 1999-05-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1CKQ 'PRE-TRANSITION STATE ECO RI-DNA COGNATE COMPLEX SOLVED TO 1.85 A' unspecified PDB 1QC9 'STRUCTURE OF ECORI SOLVED IN ABSENCE OF DNA' unspecified PDB 1CL8 ;COGNATE ECORI-DNA STRUCTURE WITH THE INNER ADENINE OF RECOGNITION SEQUENCE GAATTC REPLACED WITH BASE ANALOG PURINE ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Horvath, M.' 1 'Choi, J.' 2 'Kim, Y.' 3 'Wilkosz, P.' 4 'Rosenberg, J.M.' 5 # _citation.id primary _citation.title ;The Integration of Recognition and Cleavage: X-Ray Structures of Pre- Transition State and Post-Reactive DNA-Eco RI Endonuclease Complexes ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Horvath, M.M.' 1 ? primary 'Choi, J.' 2 ? primary 'Kim, Y.' 3 ? primary 'Wilkosz, P.' 4 ? primary 'Rosenberg, J.M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*CP*GP*CP*GP*)-3'" 1496.011 1 ? ? ? ? 2 polymer syn "5'-D(*AP*AP*TP*TP*CP*GP*CP*GP*)-3'" 2426.617 1 ? ? ? ? 3 polymer nat 'ENDONUCLEASE ECORI' 29172.166 1 ? ? 'RESIDUES 17-277' ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 water nat water 18.015 44 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'TYPE II RESTRICTION ENZYME ECORI, R.ECORI' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DG)' TCGCG M ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' AATTCGCG N ? 3 'polypeptide(L)' no no ;SQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVE VKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSESHFPYVLFLEGSNFLT ENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMF DISTTSLRVLGRDLFEQLTSK ; ;SQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVE VKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIANFMLSESHFPYVLFLEGSNFLT ENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMF DISTTSLRVLGRDLFEQLTSK ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DC n 1 5 DG n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DC n 2 6 DG n 2 7 DC n 2 8 DG n 3 1 SER n 3 2 GLN n 3 3 GLY n 3 4 VAL n 3 5 ILE n 3 6 GLY n 3 7 ILE n 3 8 PHE n 3 9 GLY n 3 10 ASP n 3 11 TYR n 3 12 ALA n 3 13 LYS n 3 14 ALA n 3 15 HIS n 3 16 ASP n 3 17 LEU n 3 18 ALA n 3 19 VAL n 3 20 GLY n 3 21 GLU n 3 22 VAL n 3 23 SER n 3 24 LYS n 3 25 LEU n 3 26 VAL n 3 27 LYS n 3 28 LYS n 3 29 ALA n 3 30 LEU n 3 31 SER n 3 32 ASN n 3 33 GLU n 3 34 TYR n 3 35 PRO n 3 36 GLN n 3 37 LEU n 3 38 SER n 3 39 PHE n 3 40 ARG n 3 41 TYR n 3 42 ARG n 3 43 ASP n 3 44 SER n 3 45 ILE n 3 46 LYS n 3 47 LYS n 3 48 THR n 3 49 GLU n 3 50 ILE n 3 51 ASN n 3 52 GLU n 3 53 ALA n 3 54 LEU n 3 55 LYS n 3 56 LYS n 3 57 ILE n 3 58 ASP n 3 59 PRO n 3 60 ASP n 3 61 LEU n 3 62 GLY n 3 63 GLY n 3 64 THR n 3 65 LEU n 3 66 PHE n 3 67 VAL n 3 68 SER n 3 69 ASN n 3 70 SER n 3 71 SER n 3 72 ILE n 3 73 LYS n 3 74 PRO n 3 75 ASP n 3 76 GLY n 3 77 GLY n 3 78 ILE n 3 79 VAL n 3 80 GLU n 3 81 VAL n 3 82 LYS n 3 83 ASP n 3 84 ASP n 3 85 TYR n 3 86 GLY n 3 87 GLU n 3 88 TRP n 3 89 ARG n 3 90 VAL n 3 91 VAL n 3 92 LEU n 3 93 VAL n 3 94 ALA n 3 95 GLU n 3 96 ALA n 3 97 LYS n 3 98 HIS n 3 99 GLN n 3 100 GLY n 3 101 LYS n 3 102 ASP n 3 103 ILE n 3 104 ILE n 3 105 ASN n 3 106 ILE n 3 107 ARG n 3 108 ASN n 3 109 GLY n 3 110 LEU n 3 111 LEU n 3 112 VAL n 3 113 GLY n 3 114 LYS n 3 115 ARG n 3 116 GLY n 3 117 ASP n 3 118 GLN n 3 119 ASP n 3 120 LEU n 3 121 MET n 3 122 ALA n 3 123 ALA n 3 124 GLY n 3 125 ASN n 3 126 ALA n 3 127 ILE n 3 128 GLU n 3 129 ARG n 3 130 SER n 3 131 HIS n 3 132 LYS n 3 133 ASN n 3 134 ILE n 3 135 SER n 3 136 GLU n 3 137 ILE n 3 138 ALA n 3 139 ASN n 3 140 PHE n 3 141 MET n 3 142 LEU n 3 143 SER n 3 144 GLU n 3 145 SER n 3 146 HIS n 3 147 PHE n 3 148 PRO n 3 149 TYR n 3 150 VAL n 3 151 LEU n 3 152 PHE n 3 153 LEU n 3 154 GLU n 3 155 GLY n 3 156 SER n 3 157 ASN n 3 158 PHE n 3 159 LEU n 3 160 THR n 3 161 GLU n 3 162 ASN n 3 163 ILE n 3 164 SER n 3 165 ILE n 3 166 THR n 3 167 ARG n 3 168 PRO n 3 169 ASP n 3 170 GLY n 3 171 ARG n 3 172 VAL n 3 173 VAL n 3 174 ASN n 3 175 LEU n 3 176 GLU n 3 177 TYR n 3 178 ASN n 3 179 SER n 3 180 GLY n 3 181 ILE n 3 182 LEU n 3 183 ASN n 3 184 ARG n 3 185 LEU n 3 186 ASP n 3 187 ARG n 3 188 LEU n 3 189 THR n 3 190 ALA n 3 191 ALA n 3 192 ASN n 3 193 TYR n 3 194 GLY n 3 195 MET n 3 196 PRO n 3 197 ILE n 3 198 ASN n 3 199 SER n 3 200 ASN n 3 201 LEU n 3 202 CYS n 3 203 ILE n 3 204 ASN n 3 205 LYS n 3 206 PHE n 3 207 VAL n 3 208 ASN n 3 209 HIS n 3 210 LYS n 3 211 ASP n 3 212 LYS n 3 213 SER n 3 214 ILE n 3 215 MET n 3 216 LEU n 3 217 GLN n 3 218 ALA n 3 219 ALA n 3 220 SER n 3 221 ILE n 3 222 TYR n 3 223 THR n 3 224 GLN n 3 225 GLY n 3 226 ASP n 3 227 GLY n 3 228 ARG n 3 229 GLU n 3 230 TRP n 3 231 ASP n 3 232 SER n 3 233 LYS n 3 234 ILE n 3 235 MET n 3 236 PHE n 3 237 GLU n 3 238 ILE n 3 239 MET n 3 240 PHE n 3 241 ASP n 3 242 ILE n 3 243 SER n 3 244 THR n 3 245 THR n 3 246 SER n 3 247 LEU n 3 248 ARG n 3 249 VAL n 3 250 LEU n 3 251 GLY n 3 252 ARG n 3 253 ASP n 3 254 LEU n 3 255 PHE n 3 256 GLU n 3 257 GLN n 3 258 LEU n 3 259 THR n 3 260 SER n 3 261 LYS n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Escherichia coli' _entity_src_nat.pdbx_ncbi_taxonomy_id 562 _entity_src_nat.genus Escherichia _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'RECOGNITION SEQUENCE' 2 1 sample ? ? ? ? ? 'RECOGNITION SEQUENCE' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T M . n A 1 2 DC 2 2 2 DC C M . n A 1 3 DG 3 3 3 DG G M . n A 1 4 DC 4 4 4 DC C M . n A 1 5 DG 5 5 5 DG G M . n B 2 1 DA 1 6 6 DA A N . n B 2 2 DA 2 7 7 DA A N . n B 2 3 DT 3 8 8 DT T N . n B 2 4 DT 4 9 9 DT T N . n B 2 5 DC 5 10 10 DC C N . n B 2 6 DG 6 11 11 DG G N . n B 2 7 DC 7 12 12 DC C N . n B 2 8 DG 8 13 13 DG G N . n C 3 1 SER 1 17 17 SER SER A . n C 3 2 GLN 2 18 18 GLN GLN A . n C 3 3 GLY 3 19 19 GLY GLY A . n C 3 4 VAL 4 20 20 VAL VAL A . n C 3 5 ILE 5 21 21 ILE ILE A . n C 3 6 GLY 6 22 22 GLY GLY A . n C 3 7 ILE 7 23 23 ILE ILE A . n C 3 8 PHE 8 24 24 PHE PHE A . n C 3 9 GLY 9 25 25 GLY GLY A . n C 3 10 ASP 10 26 26 ASP ASP A . n C 3 11 TYR 11 27 27 TYR TYR A . n C 3 12 ALA 12 28 28 ALA ALA A . n C 3 13 LYS 13 29 29 LYS LYS A . n C 3 14 ALA 14 30 30 ALA ALA A . n C 3 15 HIS 15 31 31 HIS HIS A . n C 3 16 ASP 16 32 32 ASP ASP A . n C 3 17 LEU 17 33 33 LEU LEU A . n C 3 18 ALA 18 34 34 ALA ALA A . n C 3 19 VAL 19 35 35 VAL VAL A . n C 3 20 GLY 20 36 36 GLY GLY A . n C 3 21 GLU 21 37 37 GLU GLU A . n C 3 22 VAL 22 38 38 VAL VAL A . n C 3 23 SER 23 39 39 SER SER A . n C 3 24 LYS 24 40 40 LYS LYS A . n C 3 25 LEU 25 41 41 LEU LEU A . n C 3 26 VAL 26 42 42 VAL VAL A . n C 3 27 LYS 27 43 43 LYS LYS A . n C 3 28 LYS 28 44 44 LYS LYS A . n C 3 29 ALA 29 45 45 ALA ALA A . n C 3 30 LEU 30 46 46 LEU LEU A . n C 3 31 SER 31 47 47 SER SER A . n C 3 32 ASN 32 48 48 ASN ASN A . n C 3 33 GLU 33 49 49 GLU GLU A . n C 3 34 TYR 34 50 50 TYR TYR A . n C 3 35 PRO 35 51 51 PRO PRO A . n C 3 36 GLN 36 52 52 GLN GLN A . n C 3 37 LEU 37 53 53 LEU LEU A . n C 3 38 SER 38 54 54 SER SER A . n C 3 39 PHE 39 55 55 PHE PHE A . n C 3 40 ARG 40 56 56 ARG ARG A . n C 3 41 TYR 41 57 57 TYR TYR A . n C 3 42 ARG 42 58 58 ARG ARG A . n C 3 43 ASP 43 59 59 ASP ASP A . n C 3 44 SER 44 60 60 SER SER A . n C 3 45 ILE 45 61 61 ILE ILE A . n C 3 46 LYS 46 62 62 LYS LYS A . n C 3 47 LYS 47 63 63 LYS LYS A . n C 3 48 THR 48 64 64 THR THR A . n C 3 49 GLU 49 65 65 GLU GLU A . n C 3 50 ILE 50 66 66 ILE ILE A . n C 3 51 ASN 51 67 67 ASN ASN A . n C 3 52 GLU 52 68 68 GLU GLU A . n C 3 53 ALA 53 69 69 ALA ALA A . n C 3 54 LEU 54 70 70 LEU LEU A . n C 3 55 LYS 55 71 71 LYS LYS A . n C 3 56 LYS 56 72 72 LYS LYS A . n C 3 57 ILE 57 73 73 ILE ILE A . n C 3 58 ASP 58 74 74 ASP ASP A . n C 3 59 PRO 59 75 75 PRO PRO A . n C 3 60 ASP 60 76 76 ASP ASP A . n C 3 61 LEU 61 77 77 LEU LEU A . n C 3 62 GLY 62 78 78 GLY GLY A . n C 3 63 GLY 63 79 79 GLY GLY A . n C 3 64 THR 64 80 80 THR THR A . n C 3 65 LEU 65 81 81 LEU LEU A . n C 3 66 PHE 66 82 82 PHE PHE A . n C 3 67 VAL 67 83 83 VAL VAL A . n C 3 68 SER 68 84 84 SER SER A . n C 3 69 ASN 69 85 85 ASN ASN A . n C 3 70 SER 70 86 86 SER SER A . n C 3 71 SER 71 87 87 SER SER A . n C 3 72 ILE 72 88 88 ILE ILE A . n C 3 73 LYS 73 89 89 LYS LYS A . n C 3 74 PRO 74 90 90 PRO PRO A . n C 3 75 ASP 75 91 91 ASP ASP A . n C 3 76 GLY 76 92 92 GLY GLY A . n C 3 77 GLY 77 93 93 GLY GLY A . n C 3 78 ILE 78 94 94 ILE ILE A . n C 3 79 VAL 79 95 95 VAL VAL A . n C 3 80 GLU 80 96 96 GLU GLU A . n C 3 81 VAL 81 97 97 VAL VAL A . n C 3 82 LYS 82 98 98 LYS LYS A . n C 3 83 ASP 83 99 99 ASP ASP A . n C 3 84 ASP 84 100 100 ASP ASP A . n C 3 85 TYR 85 101 101 TYR TYR A . n C 3 86 GLY 86 102 102 GLY GLY A . n C 3 87 GLU 87 103 103 GLU GLU A . n C 3 88 TRP 88 104 104 TRP TRP A . n C 3 89 ARG 89 105 105 ARG ARG A . n C 3 90 VAL 90 106 106 VAL VAL A . n C 3 91 VAL 91 107 107 VAL VAL A . n C 3 92 LEU 92 108 108 LEU LEU A . n C 3 93 VAL 93 109 109 VAL VAL A . n C 3 94 ALA 94 110 110 ALA ALA A . n C 3 95 GLU 95 111 111 GLU GLU A . n C 3 96 ALA 96 112 112 ALA ALA A . n C 3 97 LYS 97 113 113 LYS LYS A . n C 3 98 HIS 98 114 114 HIS HIS A . n C 3 99 GLN 99 115 115 GLN GLN A . n C 3 100 GLY 100 116 116 GLY GLY A . n C 3 101 LYS 101 117 117 LYS LYS A . n C 3 102 ASP 102 118 118 ASP ASP A . n C 3 103 ILE 103 119 119 ILE ILE A . n C 3 104 ILE 104 120 120 ILE ILE A . n C 3 105 ASN 105 121 121 ASN ASN A . n C 3 106 ILE 106 122 122 ILE ILE A . n C 3 107 ARG 107 123 123 ARG ARG A . n C 3 108 ASN 108 124 124 ASN ASN A . n C 3 109 GLY 109 125 125 GLY GLY A . n C 3 110 LEU 110 126 126 LEU LEU A . n C 3 111 LEU 111 127 127 LEU LEU A . n C 3 112 VAL 112 128 128 VAL VAL A . n C 3 113 GLY 113 129 129 GLY GLY A . n C 3 114 LYS 114 130 130 LYS LYS A . n C 3 115 ARG 115 131 131 ARG ARG A . n C 3 116 GLY 116 132 132 GLY GLY A . n C 3 117 ASP 117 133 133 ASP ASP A . n C 3 118 GLN 118 134 134 GLN GLN A . n C 3 119 ASP 119 135 135 ASP ASP A . n C 3 120 LEU 120 136 136 LEU LEU A . n C 3 121 MET 121 137 137 MET MET A . n C 3 122 ALA 122 138 138 ALA ALA A . n C 3 123 ALA 123 139 139 ALA ALA A . n C 3 124 GLY 124 140 140 GLY GLY A . n C 3 125 ASN 125 141 141 ASN ASN A . n C 3 126 ALA 126 142 142 ALA ALA A . n C 3 127 ILE 127 143 143 ILE ILE A . n C 3 128 GLU 128 144 144 GLU GLU A . n C 3 129 ARG 129 145 145 ARG ARG A . n C 3 130 SER 130 146 146 SER SER A . n C 3 131 HIS 131 147 147 HIS HIS A . n C 3 132 LYS 132 148 148 LYS LYS A . n C 3 133 ASN 133 149 149 ASN ASN A . n C 3 134 ILE 134 150 150 ILE ILE A . n C 3 135 SER 135 151 151 SER SER A . n C 3 136 GLU 136 152 152 GLU GLU A . n C 3 137 ILE 137 153 153 ILE ILE A . n C 3 138 ALA 138 154 154 ALA ALA A . n C 3 139 ASN 139 155 155 ASN ASN A . n C 3 140 PHE 140 156 156 PHE PHE A . n C 3 141 MET 141 157 157 MET MET A . n C 3 142 LEU 142 158 158 LEU LEU A . n C 3 143 SER 143 159 159 SER SER A . n C 3 144 GLU 144 160 160 GLU GLU A . n C 3 145 SER 145 161 161 SER SER A . n C 3 146 HIS 146 162 162 HIS HIS A . n C 3 147 PHE 147 163 163 PHE PHE A . n C 3 148 PRO 148 164 164 PRO PRO A . n C 3 149 TYR 149 165 165 TYR TYR A . n C 3 150 VAL 150 166 166 VAL VAL A . n C 3 151 LEU 151 167 167 LEU LEU A . n C 3 152 PHE 152 168 168 PHE PHE A . n C 3 153 LEU 153 169 169 LEU LEU A . n C 3 154 GLU 154 170 170 GLU GLU A . n C 3 155 GLY 155 171 171 GLY GLY A . n C 3 156 SER 156 172 172 SER SER A . n C 3 157 ASN 157 173 173 ASN ASN A . n C 3 158 PHE 158 174 174 PHE PHE A . n C 3 159 LEU 159 175 175 LEU LEU A . n C 3 160 THR 160 176 176 THR THR A . n C 3 161 GLU 161 177 177 GLU GLU A . n C 3 162 ASN 162 178 178 ASN ASN A . n C 3 163 ILE 163 179 179 ILE ILE A . n C 3 164 SER 164 180 180 SER SER A . n C 3 165 ILE 165 181 181 ILE ILE A . n C 3 166 THR 166 182 182 THR THR A . n C 3 167 ARG 167 183 183 ARG ARG A . n C 3 168 PRO 168 184 184 PRO PRO A . n C 3 169 ASP 169 185 185 ASP ASP A . n C 3 170 GLY 170 186 186 GLY GLY A . n C 3 171 ARG 171 187 187 ARG ARG A . n C 3 172 VAL 172 188 188 VAL VAL A . n C 3 173 VAL 173 189 189 VAL VAL A . n C 3 174 ASN 174 190 190 ASN ASN A . n C 3 175 LEU 175 191 191 LEU LEU A . n C 3 176 GLU 176 192 192 GLU GLU A . n C 3 177 TYR 177 193 193 TYR TYR A . n C 3 178 ASN 178 194 194 ASN ASN A . n C 3 179 SER 179 195 195 SER SER A . n C 3 180 GLY 180 196 196 GLY GLY A . n C 3 181 ILE 181 197 197 ILE ILE A . n C 3 182 LEU 182 198 198 LEU LEU A . n C 3 183 ASN 183 199 199 ASN ASN A . n C 3 184 ARG 184 200 200 ARG ARG A . n C 3 185 LEU 185 201 201 LEU LEU A . n C 3 186 ASP 186 202 202 ASP ASP A . n C 3 187 ARG 187 203 203 ARG ARG A . n C 3 188 LEU 188 204 204 LEU LEU A . n C 3 189 THR 189 205 205 THR THR A . n C 3 190 ALA 190 206 206 ALA ALA A . n C 3 191 ALA 191 207 207 ALA ALA A . n C 3 192 ASN 192 208 208 ASN ASN A . n C 3 193 TYR 193 209 209 TYR TYR A . n C 3 194 GLY 194 210 210 GLY GLY A . n C 3 195 MET 195 211 211 MET MET A . n C 3 196 PRO 196 212 212 PRO PRO A . n C 3 197 ILE 197 213 213 ILE ILE A . n C 3 198 ASN 198 214 214 ASN ASN A . n C 3 199 SER 199 215 215 SER SER A . n C 3 200 ASN 200 216 216 ASN ASN A . n C 3 201 LEU 201 217 217 LEU LEU A . n C 3 202 CYS 202 218 218 CYS CYS A . n C 3 203 ILE 203 219 219 ILE ILE A . n C 3 204 ASN 204 220 220 ASN ASN A . n C 3 205 LYS 205 221 221 LYS LYS A . n C 3 206 PHE 206 222 222 PHE PHE A . n C 3 207 VAL 207 223 223 VAL VAL A . n C 3 208 ASN 208 224 224 ASN ASN A . n C 3 209 HIS 209 225 225 HIS HIS A . n C 3 210 LYS 210 226 226 LYS LYS A . n C 3 211 ASP 211 227 227 ASP ASP A . n C 3 212 LYS 212 228 228 LYS LYS A . n C 3 213 SER 213 229 229 SER SER A . n C 3 214 ILE 214 230 230 ILE ILE A . n C 3 215 MET 215 231 231 MET MET A . n C 3 216 LEU 216 232 232 LEU LEU A . n C 3 217 GLN 217 233 233 GLN GLN A . n C 3 218 ALA 218 234 234 ALA ALA A . n C 3 219 ALA 219 235 235 ALA ALA A . n C 3 220 SER 220 236 236 SER SER A . n C 3 221 ILE 221 237 237 ILE ILE A . n C 3 222 TYR 222 238 238 TYR TYR A . n C 3 223 THR 223 239 239 THR THR A . n C 3 224 GLN 224 240 240 GLN GLN A . n C 3 225 GLY 225 241 241 GLY GLY A . n C 3 226 ASP 226 242 242 ASP ASP A . n C 3 227 GLY 227 243 243 GLY GLY A . n C 3 228 ARG 228 244 244 ARG ARG A . n C 3 229 GLU 229 245 245 GLU GLU A . n C 3 230 TRP 230 246 246 TRP TRP A . n C 3 231 ASP 231 247 247 ASP ASP A . n C 3 232 SER 232 248 248 SER SER A . n C 3 233 LYS 233 249 249 LYS LYS A . n C 3 234 ILE 234 250 250 ILE ILE A . n C 3 235 MET 235 251 251 MET MET A . n C 3 236 PHE 236 252 252 PHE PHE A . n C 3 237 GLU 237 253 253 GLU GLU A . n C 3 238 ILE 238 254 254 ILE ILE A . n C 3 239 MET 239 255 255 MET MET A . n C 3 240 PHE 240 256 256 PHE PHE A . n C 3 241 ASP 241 257 257 ASP ASP A . n C 3 242 ILE 242 258 258 ILE ILE A . n C 3 243 SER 243 259 259 SER SER A . n C 3 244 THR 244 260 260 THR THR A . n C 3 245 THR 245 261 261 THR THR A . n C 3 246 SER 246 262 262 SER SER A . n C 3 247 LEU 247 263 263 LEU LEU A . n C 3 248 ARG 248 264 264 ARG ARG A . n C 3 249 VAL 249 265 265 VAL VAL A . n C 3 250 LEU 250 266 266 LEU LEU A . n C 3 251 GLY 251 267 267 GLY GLY A . n C 3 252 ARG 252 268 268 ARG ARG A . n C 3 253 ASP 253 269 269 ASP ASP A . n C 3 254 LEU 254 270 270 LEU LEU A . n C 3 255 PHE 255 271 271 PHE PHE A . n C 3 256 GLU 256 272 272 GLU GLU A . n C 3 257 GLN 257 273 273 GLN GLN A . n C 3 258 LEU 258 274 274 LEU LEU A . n C 3 259 THR 259 275 275 THR THR A . n C 3 260 SER 260 276 276 SER SER A . n C 3 261 LYS 261 277 277 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 278 45 MN MN A . E 5 HOH 1 6 1 HOH HOH M . E 5 HOH 2 7 2 HOH HOH M . E 5 HOH 3 8 6 HOH HOH M . E 5 HOH 4 9 16 HOH HOH M . E 5 HOH 5 10 27 HOH HOH M . E 5 HOH 6 11 41 HOH HOH M . F 5 HOH 1 14 9 HOH HOH N . F 5 HOH 2 15 10 HOH HOH N . F 5 HOH 3 16 12 HOH HOH N . F 5 HOH 4 17 23 HOH HOH N . F 5 HOH 5 18 38 HOH HOH N . F 5 HOH 6 19 40 HOH HOH N . F 5 HOH 7 20 43 HOH HOH N . F 5 HOH 8 21 44 HOH HOH N . G 5 HOH 1 279 3 HOH HOH A . G 5 HOH 2 280 4 HOH HOH A . G 5 HOH 3 281 5 HOH HOH A . G 5 HOH 4 282 7 HOH HOH A . G 5 HOH 5 283 8 HOH HOH A . G 5 HOH 6 284 11 HOH HOH A . G 5 HOH 7 285 13 HOH HOH A . G 5 HOH 8 286 14 HOH HOH A . G 5 HOH 9 287 15 HOH HOH A . G 5 HOH 10 288 17 HOH HOH A . G 5 HOH 11 289 18 HOH HOH A . G 5 HOH 12 290 19 HOH HOH A . G 5 HOH 13 291 20 HOH HOH A . G 5 HOH 14 292 21 HOH HOH A . G 5 HOH 15 293 22 HOH HOH A . G 5 HOH 16 294 24 HOH HOH A . G 5 HOH 17 295 25 HOH HOH A . G 5 HOH 18 296 26 HOH HOH A . G 5 HOH 19 297 28 HOH HOH A . G 5 HOH 20 298 29 HOH HOH A . G 5 HOH 21 299 30 HOH HOH A . G 5 HOH 22 300 31 HOH HOH A . G 5 HOH 23 301 32 HOH HOH A . G 5 HOH 24 302 33 HOH HOH A . G 5 HOH 25 303 34 HOH HOH A . G 5 HOH 26 304 35 HOH HOH A . G 5 HOH 27 305 36 HOH HOH A . G 5 HOH 28 306 37 HOH HOH A . G 5 HOH 29 307 39 HOH HOH A . G 5 HOH 30 308 42 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.1 ? 2 X-GEN 'data reduction' . ? 3 X-GEN 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1QPS _cell.length_a 118.4 _cell.length_b 118.4 _cell.length_c 49.7 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QPS _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 150 # _exptl.entry_id 1QPS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.02 _exptl_crystal.density_percent_sol 59.32 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;MN ION WAS SOAKED INTO PRE-REACTIVE PROTEIN-DNA COCRYSTALS AND DNA CLEAVAGE OCCURED IN-CRYSTALLO, pH 7.5, VAPOR DIFFUSION, temperature 4K ; _exptl_crystal_grow.pdbx_pH_range ? # _exptl_crystal_grow_comp.crystal_id 1 _exptl_crystal_grow_comp.id 1 _exptl_crystal_grow_comp.sol_id 3 _exptl_crystal_grow_comp.name MN _exptl_crystal_grow_comp.volume ? _exptl_crystal_grow_comp.conc ? _exptl_crystal_grow_comp.details ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QPS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.5 _reflns.number_obs 8653 _reflns.number_all 14659 _reflns.percent_possible_obs 59 _reflns.pdbx_Rmerge_I_obs 0.0850000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.7 _reflns_shell.percent_possible_all 13 _reflns_shell.Rmerge_I_obs 0.0830000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1QPS _refine.ls_number_reflns_obs 7596 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1770000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER PARAMETERS FOR PROTEIN; BERMAN PARAMETERS FOR DNA' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2051 _refine_hist.pdbx_number_atoms_nucleic_acid 264 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 2360 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1QPS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QPS _struct.title 'THE CRYSTAL STRUCTURE OF A POST-REACTIVE COGNATE DNA-ECO RI COMPLEX AT 2.50 A IN THE PRESENCE OF MN2+ ION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QPS _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'ENZYME, RESTRICTION ENDONCULEASE, PROTEIN, DNA, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP T2E1_ECOLI 3 P00642 ? ? ? 2 PDB 1QPS 1 1QPS ? ? ? 3 PDB 1QPS 2 1QPS ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QPS A 1 ? 261 ? P00642 16 ? 276 ? 17 277 2 2 1QPS M 1 ? 5 ? 1QPS 1 ? 5 ? 1 5 3 3 1QPS N 1 ? 8 ? 1QPS 6 ? 13 ? 6 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 3 ? ASP C 16 ? GLY A 19 ASP A 32 1 ? 14 HELX_P HELX_P2 2 ALA C 18 ? TYR C 34 ? ALA A 34 TYR A 50 1 ? 17 HELX_P HELX_P3 3 LYS C 47 ? LYS C 56 ? LYS A 63 LYS A 72 1 ? 10 HELX_P HELX_P4 4 LYS C 101 ? ASN C 108 ? LYS A 117 ASN A 124 1 ? 8 HELX_P HELX_P5 5 ASN C 125 ? ARG C 129 ? ASN A 141 ARG A 145 5 ? 5 HELX_P HELX_P6 6 SER C 130 ? MET C 141 ? SER A 146 MET A 157 1 ? 12 HELX_P HELX_P7 7 GLY C 155 ? LEU C 159 ? GLY A 171 LEU A 175 5 ? 5 HELX_P HELX_P8 8 ARG C 171 ? LEU C 175 ? ARG A 187 LEU A 191 5 ? 5 HELX_P HELX_P9 9 ASP C 231 ? VAL C 249 ? ASP A 247 VAL A 265 1 ? 19 HELX_P HELX_P10 10 LEU C 250 ? ASP C 253 ? LEU A 266 ASP A 269 5 ? 4 HELX_P HELX_P11 11 LEU C 254 ? LYS C 261 ? LEU A 270 LYS A 277 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DA 1 OP2 ? ? ? 1_555 D MN . MN ? ? N DA 6 A MN 278 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc2 metalc ? ? F HOH . O ? ? ? 1_555 D MN . MN ? ? N HOH 20 A MN 278 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc3 metalc ? ? F HOH . O ? ? ? 1_555 D MN . MN ? ? N HOH 21 A MN 278 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc4 metalc ? ? C ASP 75 OD2 ? ? ? 1_555 D MN . MN ? ? A ASP 91 A MN 278 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc5 metalc ? ? C GLU 95 OE1 ? ? ? 1_555 D MN . MN ? ? A GLU 111 A MN 278 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc6 metalc ? ? C ALA 96 O ? ? ? 1_555 D MN . MN ? ? A ALA 112 A MN 278 1_555 ? ? ? ? ? ? ? 2.326 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 B DT 4 N3 ? ? N DA 6 N DT 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 B DT 4 O4 ? ? N DA 6 N DT 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DA 2 N1 ? ? ? 1_555 B DT 3 N3 ? ? N DA 7 N DT 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N6 ? ? ? 1_555 B DT 3 O4 ? ? N DA 7 N DT 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 2 N1 ? ? N DT 8 N DA 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 2 N6 ? ? N DT 8 N DA 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 N3 ? ? ? 1_555 B DA 1 N1 ? ? N DT 9 N DA 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 4 O4 ? ? ? 1_555 B DA 1 N6 ? ? N DT 9 N DA 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? B DA 1 ? N DA 6 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? F HOH . ? N HOH 20 ? 1_555 96.8 ? 2 OP2 ? B DA 1 ? N DA 6 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? F HOH . ? N HOH 21 ? 1_555 79.1 ? 3 O ? F HOH . ? N HOH 20 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? F HOH . ? N HOH 21 ? 1_555 100.5 ? 4 OP2 ? B DA 1 ? N DA 6 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OD2 ? C ASP 75 ? A ASP 91 ? 1_555 163.2 ? 5 O ? F HOH . ? N HOH 20 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OD2 ? C ASP 75 ? A ASP 91 ? 1_555 92.2 ? 6 O ? F HOH . ? N HOH 21 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OD2 ? C ASP 75 ? A ASP 91 ? 1_555 85.3 ? 7 OP2 ? B DA 1 ? N DA 6 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OE1 ? C GLU 95 ? A GLU 111 ? 1_555 97.7 ? 8 O ? F HOH . ? N HOH 20 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OE1 ? C GLU 95 ? A GLU 111 ? 1_555 80.2 ? 9 O ? F HOH . ? N HOH 21 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OE1 ? C GLU 95 ? A GLU 111 ? 1_555 176.8 ? 10 OD2 ? C ASP 75 ? A ASP 91 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 OE1 ? C GLU 95 ? A GLU 111 ? 1_555 97.9 ? 11 OP2 ? B DA 1 ? N DA 6 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? C ALA 96 ? A ALA 112 ? 1_555 91.7 ? 12 O ? F HOH . ? N HOH 20 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? C ALA 96 ? A ALA 112 ? 1_555 171.4 ? 13 O ? F HOH . ? N HOH 21 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? C ALA 96 ? A ALA 112 ? 1_555 80.3 ? 14 OD2 ? C ASP 75 ? A ASP 91 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? C ALA 96 ? A ALA 112 ? 1_555 79.4 ? 15 OE1 ? C GLU 95 ? A GLU 111 ? 1_555 MN ? D MN . ? A MN 278 ? 1_555 O ? C ALA 96 ? A ALA 112 ? 1_555 99.4 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE C 39 ? ARG C 42 ? PHE A 55 ARG A 58 A 2 ILE C 78 ? LYS C 82 ? ILE A 94 LYS A 98 A 3 TRP C 88 ? HIS C 98 ? TRP A 104 HIS A 114 A 4 TYR C 149 ? GLU C 154 ? TYR A 165 GLU A 170 A 5 SER C 220 ? THR C 223 ? SER A 236 THR A 239 B 1 ILE C 45 ? LYS C 46 ? ILE A 61 LYS A 62 B 2 SER C 71 ? ILE C 72 ? SER A 87 ILE A 88 C 1 ILE C 163 ? ARG C 167 ? ILE A 179 ARG A 183 C 2 ARG C 171 ? LEU C 175 ? ARG A 187 LEU A 191 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG C 42 ? O ARG A 58 N ILE C 78 ? N ILE A 94 A 2 3 O VAL C 81 ? O VAL A 97 N ARG C 89 ? N ARG A 105 A 3 4 N GLU C 95 ? N GLU A 111 O VAL C 150 ? O VAL A 166 A 4 5 O TYR C 149 ? O TYR A 165 N SER C 220 ? N SER A 236 B 1 2 O ILE C 45 ? O ILE A 61 N ILE C 72 ? N ILE A 88 C 1 2 N ARG C 167 ? N ARG A 183 O ARG C 171 ? O ARG A 187 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MN _struct_site.pdbx_auth_seq_id 278 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MN A 278' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP C 75 ? ASP A 91 . ? 1_555 ? 2 AC1 6 GLU C 95 ? GLU A 111 . ? 1_555 ? 3 AC1 6 ALA C 96 ? ALA A 112 . ? 1_555 ? 4 AC1 6 DA B 1 ? DA N 6 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH N 20 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH N 21 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" M DC 2 ? ? "C4'" M DC 2 ? ? 1.565 1.512 0.053 0.007 N 2 1 "C5'" M DG 3 ? ? "C4'" M DG 3 ? ? 1.557 1.512 0.045 0.007 N 3 1 "C2'" M DG 3 ? ? "C1'" M DG 3 ? ? 1.581 1.519 0.062 0.010 N 4 1 P N DA 6 ? ? OP3 N DA 6 ? A 1.487 1.607 -0.120 0.012 N 5 1 "C4'" N DA 7 ? ? "C3'" N DA 7 ? ? 1.417 1.521 -0.104 0.010 N 6 1 "O4'" N DA 7 ? ? "C4'" N DA 7 ? ? 1.325 1.446 -0.121 0.010 N 7 1 "O3'" N DA 7 ? ? "C3'" N DA 7 ? ? 1.338 1.419 -0.081 0.006 N 8 1 "O3'" N DA 7 ? ? P N DT 8 ? ? 1.479 1.607 -0.128 0.012 Y 9 1 "C3'" N DT 8 ? ? "C2'" N DT 8 ? ? 1.597 1.518 0.079 0.012 N 10 1 "C2'" N DT 8 ? ? "C1'" N DT 8 ? ? 1.612 1.519 0.093 0.010 N 11 1 "C5'" N DT 9 ? ? "C4'" N DT 9 ? ? 1.555 1.512 0.043 0.007 N 12 1 "C4'" N DG 13 ? ? "C3'" N DG 13 ? ? 1.448 1.521 -0.073 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" M DT 1 ? ? "C1'" M DT 1 ? ? N1 M DT 1 ? ? 114.59 108.30 6.29 0.30 N 2 1 N3 M DT 1 ? ? C2 M DT 1 ? ? O2 M DT 1 ? ? 117.84 122.30 -4.46 0.60 N 3 1 C6 M DT 1 ? ? C5 M DT 1 ? ? C7 M DT 1 ? ? 117.89 122.90 -5.01 0.60 N 4 1 "O3'" M DT 1 ? ? P M DC 2 ? ? "O5'" M DC 2 ? ? 71.41 104.00 -32.59 1.90 Y 5 1 "O3'" M DT 1 ? ? P M DC 2 ? ? OP2 M DC 2 ? ? 139.51 110.50 29.01 1.10 Y 6 1 "O5'" M DC 2 ? ? P M DC 2 ? ? OP1 M DC 2 ? ? 130.56 110.70 19.86 1.20 N 7 1 "O5'" M DC 2 ? ? P M DC 2 ? ? OP2 M DC 2 ? ? 73.85 105.70 -31.85 0.90 N 8 1 "O4'" M DC 2 ? ? "C4'" M DC 2 ? ? "C3'" M DC 2 ? ? 100.18 104.50 -4.32 0.40 N 9 1 "C1'" M DC 2 ? ? "O4'" M DC 2 ? ? "C4'" M DC 2 ? ? 116.51 110.30 6.21 0.70 N 10 1 "O4'" M DC 2 ? ? "C1'" M DC 2 ? ? "C2'" M DC 2 ? ? 99.05 105.90 -6.85 0.80 N 11 1 "O3'" M DC 2 ? ? P M DG 3 ? ? OP1 M DG 3 ? ? 117.34 110.50 6.84 1.10 Y 12 1 "C2'" M DG 3 ? ? "C3'" M DG 3 ? ? "O3'" M DG 3 ? ? 133.68 112.60 21.08 3.30 N 13 1 "O4'" M DG 3 ? ? "C1'" M DG 3 ? ? N9 M DG 3 ? ? 114.76 108.30 6.46 0.30 N 14 1 OP1 M DC 4 ? ? P M DC 4 ? ? OP2 M DC 4 ? ? 110.08 119.60 -9.52 1.50 N 15 1 "O5'" M DC 4 ? ? P M DC 4 ? ? OP1 M DC 4 ? ? 121.43 110.70 10.73 1.20 N 16 1 "C3'" M DC 4 ? ? "C2'" M DC 4 ? ? "C1'" M DC 4 ? ? 95.42 102.40 -6.98 0.80 N 17 1 N1 M DC 4 ? ? "C1'" M DC 4 ? ? "C2'" M DC 4 ? ? 100.66 112.60 -11.94 1.90 N 18 1 "O4'" M DG 5 ? ? "C4'" M DG 5 ? ? "C3'" M DG 5 ? ? 101.67 104.50 -2.83 0.40 N 19 1 "O4'" M DG 5 ? ? "C1'" M DG 5 ? ? N9 M DG 5 ? ? 112.43 108.30 4.13 0.30 N 20 1 "O3'" N DA 6 ? ? P N DA 7 ? ? "O5'" N DA 7 ? ? 90.49 104.00 -13.51 1.90 Y 21 1 "O3'" N DA 6 ? ? P N DA 7 ? ? OP1 N DA 7 ? ? 117.97 110.50 7.47 1.10 Y 22 1 "O5'" N DA 7 ? ? P N DA 7 ? ? OP1 N DA 7 ? ? 129.13 110.70 18.43 1.20 N 23 1 "O5'" N DA 7 ? ? P N DA 7 ? ? OP2 N DA 7 ? ? 82.00 105.70 -23.70 0.90 N 24 1 "C1'" N DA 7 ? ? "O4'" N DA 7 ? ? "C4'" N DA 7 ? ? 116.31 110.30 6.01 0.70 N 25 1 "C4'" N DA 7 ? ? "C3'" N DA 7 ? ? "O3'" N DA 7 ? ? 91.17 109.70 -18.53 2.50 N 26 1 "C2'" N DA 7 ? ? "C3'" N DA 7 ? ? "O3'" N DA 7 ? ? 141.57 112.60 28.97 3.30 N 27 1 "O4'" N DA 7 ? ? "C1'" N DA 7 ? ? "C2'" N DA 7 ? ? 93.36 105.90 -12.54 0.80 N 28 1 N9 N DA 7 ? ? "C1'" N DA 7 ? ? "C2'" N DA 7 ? ? 124.08 114.30 9.78 1.40 N 29 1 "O4'" N DA 7 ? ? "C1'" N DA 7 ? ? N9 N DA 7 ? ? 110.74 108.30 2.44 0.30 N 30 1 "O3'" N DA 7 ? ? P N DT 8 ? ? "O5'" N DT 8 ? ? 91.70 104.00 -12.30 1.90 Y 31 1 P N DT 8 ? ? "O5'" N DT 8 ? ? "C5'" N DT 8 ? ? 111.06 120.90 -9.84 1.60 N 32 1 "C2'" N DT 8 ? ? "C3'" N DT 8 ? ? "O3'" N DT 8 ? ? 135.54 112.60 22.94 3.30 N 33 1 N1 N DT 8 ? ? "C1'" N DT 8 ? ? "C2'" N DT 8 ? ? 86.72 112.60 -25.88 1.90 N 34 1 C6 N DT 8 ? ? C5 N DT 8 ? ? C7 N DT 8 ? ? 118.89 122.90 -4.01 0.60 N 35 1 "C3'" N DT 9 ? ? "C2'" N DT 9 ? ? "C1'" N DT 9 ? ? 95.11 102.40 -7.29 0.80 N 36 1 N1 N DT 9 ? ? "C1'" N DT 9 ? ? "C2'" N DT 9 ? ? 85.22 112.60 -27.38 1.90 N 37 1 C6 N DT 9 ? ? C5 N DT 9 ? ? C7 N DT 9 ? ? 118.94 122.90 -3.96 0.60 N 38 1 "O5'" N DC 10 ? ? P N DC 10 ? ? OP2 N DC 10 ? ? 99.02 105.70 -6.68 0.90 N 39 1 "O4'" N DC 10 ? ? "C4'" N DC 10 ? ? "C3'" N DC 10 ? ? 90.68 104.50 -13.82 0.40 N 40 1 "C3'" N DC 10 ? ? "C2'" N DC 10 ? ? "C1'" N DC 10 ? ? 97.27 102.40 -5.13 0.80 N 41 1 "O4'" N DC 10 ? ? "C1'" N DC 10 ? ? "C2'" N DC 10 ? ? 84.59 105.90 -21.31 0.80 N 42 1 "O4'" N DC 10 ? ? "C1'" N DC 10 ? ? N1 N DC 10 ? ? 111.11 108.30 2.81 0.30 N 43 1 N1 N DC 10 ? ? C2 N DC 10 ? ? O2 N DC 10 ? ? 122.96 118.90 4.06 0.60 N 44 1 "C3'" N DG 11 ? ? "C2'" N DG 11 ? ? "C1'" N DG 11 ? ? 95.74 102.40 -6.66 0.80 N 45 1 "O4'" N DG 11 ? ? "C1'" N DG 11 ? ? N9 N DG 11 ? ? 102.16 108.00 -5.84 0.70 N 46 1 "C3'" N DC 12 ? ? "C2'" N DC 12 ? ? "C1'" N DC 12 ? ? 95.78 102.40 -6.62 0.80 N 47 1 N1 N DC 12 ? ? "C1'" N DC 12 ? ? "C2'" N DC 12 ? ? 96.58 112.60 -16.02 1.90 N 48 1 P N DG 13 ? ? "O5'" N DG 13 ? ? "C5'" N DG 13 ? ? 110.43 120.90 -10.47 1.60 N 49 1 "O4'" N DG 13 ? ? "C1'" N DG 13 ? ? "C2'" N DG 13 ? ? 97.81 105.90 -8.09 0.80 N 50 1 "O4'" N DG 13 ? ? "C1'" N DG 13 ? ? N9 N DG 13 ? ? 103.53 108.00 -4.47 0.70 N 51 1 CB A ASP 91 ? ? CG A ASP 91 ? ? OD1 A ASP 91 ? ? 124.83 118.30 6.53 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 18 ? ? -57.04 91.58 2 1 LEU A 81 ? ? 176.19 121.97 3 1 ASN A 85 ? ? -81.98 31.14 4 1 ASP A 91 ? ? -63.00 4.76 5 1 VAL A 128 ? ? -108.82 -165.04 6 1 PRO A 164 ? ? -84.46 47.79 7 1 ASP A 185 ? ? -78.16 39.91 8 1 LEU A 198 ? ? -133.60 -66.42 9 1 ILE A 213 ? ? -75.89 -75.28 10 1 PHE A 222 ? ? -103.37 75.62 11 1 HIS A 225 ? ? -147.18 -62.60 12 1 LYS A 226 ? ? -108.42 -132.74 13 1 LYS A 228 ? ? -64.81 94.16 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA N 6 ? A 0.050 'SIDE CHAIN' 2 1 DT N 9 ? ? 0.072 'SIDE CHAIN' 3 1 DG N 13 ? ? 0.053 'SIDE CHAIN' 4 1 TYR A 27 ? ? 0.072 'SIDE CHAIN' 5 1 ARG A 183 ? ? 0.179 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 MN MN MN N N 393 PHE N N N N 394 PHE CA C N S 395 PHE C C N N 396 PHE O O N N 397 PHE CB C N N 398 PHE CG C Y N 399 PHE CD1 C Y N 400 PHE CD2 C Y N 401 PHE CE1 C Y N 402 PHE CE2 C Y N 403 PHE CZ C Y N 404 PHE OXT O N N 405 PHE H H N N 406 PHE H2 H N N 407 PHE HA H N N 408 PHE HB2 H N N 409 PHE HB3 H N N 410 PHE HD1 H N N 411 PHE HD2 H N N 412 PHE HE1 H N N 413 PHE HE2 H N N 414 PHE HZ H N N 415 PHE HXT H N N 416 PRO N N N N 417 PRO CA C N S 418 PRO C C N N 419 PRO O O N N 420 PRO CB C N N 421 PRO CG C N N 422 PRO CD C N N 423 PRO OXT O N N 424 PRO H H N N 425 PRO HA H N N 426 PRO HB2 H N N 427 PRO HB3 H N N 428 PRO HG2 H N N 429 PRO HG3 H N N 430 PRO HD2 H N N 431 PRO HD3 H N N 432 PRO HXT H N N 433 SER N N N N 434 SER CA C N S 435 SER C C N N 436 SER O O N N 437 SER CB C N N 438 SER OG O N N 439 SER OXT O N N 440 SER H H N N 441 SER H2 H N N 442 SER HA H N N 443 SER HB2 H N N 444 SER HB3 H N N 445 SER HG H N N 446 SER HXT H N N 447 THR N N N N 448 THR CA C N S 449 THR C C N N 450 THR O O N N 451 THR CB C N R 452 THR OG1 O N N 453 THR CG2 C N N 454 THR OXT O N N 455 THR H H N N 456 THR H2 H N N 457 THR HA H N N 458 THR HB H N N 459 THR HG1 H N N 460 THR HG21 H N N 461 THR HG22 H N N 462 THR HG23 H N N 463 THR HXT H N N 464 TRP N N N N 465 TRP CA C N S 466 TRP C C N N 467 TRP O O N N 468 TRP CB C N N 469 TRP CG C Y N 470 TRP CD1 C Y N 471 TRP CD2 C Y N 472 TRP NE1 N Y N 473 TRP CE2 C Y N 474 TRP CE3 C Y N 475 TRP CZ2 C Y N 476 TRP CZ3 C Y N 477 TRP CH2 C Y N 478 TRP OXT O N N 479 TRP H H N N 480 TRP H2 H N N 481 TRP HA H N N 482 TRP HB2 H N N 483 TRP HB3 H N N 484 TRP HD1 H N N 485 TRP HE1 H N N 486 TRP HE3 H N N 487 TRP HZ2 H N N 488 TRP HZ3 H N N 489 TRP HH2 H N N 490 TRP HXT H N N 491 TYR N N N N 492 TYR CA C N S 493 TYR C C N N 494 TYR O O N N 495 TYR CB C N N 496 TYR CG C Y N 497 TYR CD1 C Y N 498 TYR CD2 C Y N 499 TYR CE1 C Y N 500 TYR CE2 C Y N 501 TYR CZ C Y N 502 TYR OH O N N 503 TYR OXT O N N 504 TYR H H N N 505 TYR H2 H N N 506 TYR HA H N N 507 TYR HB2 H N N 508 TYR HB3 H N N 509 TYR HD1 H N N 510 TYR HD2 H N N 511 TYR HE1 H N N 512 TYR HE2 H N N 513 TYR HH H N N 514 TYR HXT H N N 515 VAL N N N N 516 VAL CA C N S 517 VAL C C N N 518 VAL O O N N 519 VAL CB C N N 520 VAL CG1 C N N 521 VAL CG2 C N N 522 VAL OXT O N N 523 VAL H H N N 524 VAL H2 H N N 525 VAL HA H N N 526 VAL HB H N N 527 VAL HG11 H N N 528 VAL HG12 H N N 529 VAL HG13 H N N 530 VAL HG21 H N N 531 VAL HG22 H N N 532 VAL HG23 H N N 533 VAL HXT H N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # _ndb_struct_conf_na.entry_id 1QPS _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 B DT 4 4_555 -0.062 -0.437 -0.191 3.310 -13.142 -0.783 1 N_DA6:DT9_N N 6 ? N 9 ? 20 1 1 B DA 2 1_555 B DT 3 4_555 0.386 -0.365 0.719 4.670 4.493 -4.789 2 N_DA7:DT8_N N 7 ? N 8 ? 20 1 1 B DT 3 1_555 B DA 2 4_555 -0.386 -0.365 0.719 -4.670 4.493 -4.789 3 N_DT8:DA7_N N 8 ? N 7 ? 20 1 1 B DT 4 1_555 B DA 1 4_555 0.062 -0.437 -0.191 -3.310 -13.142 -0.783 4 N_DT9:DA6_N N 9 ? N 6 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 B DT 4 4_555 B DA 2 1_555 B DT 3 4_555 0.514 0.492 3.904 -7.951 31.061 23.618 -3.919 -1.947 2.635 52.836 13.525 39.637 1 NN_DA6DA7:DT8DT9_NN N 6 ? N 9 ? N 7 ? N 8 ? 1 B DA 2 1_555 B DT 3 4_555 B DT 3 1_555 B DA 2 4_555 0.000 0.737 4.874 0.000 -52.288 37.799 4.073 0.000 2.409 -56.579 0.000 63.730 2 NN_DA7DT8:DA7DT8_NN N 7 ? N 8 ? N 8 ? N 7 ? 1 B DT 3 1_555 B DA 2 4_555 B DT 4 1_555 B DA 1 4_555 -0.514 0.492 3.904 7.951 31.061 23.618 -3.919 1.947 2.635 52.836 -13.525 39.637 3 NN_DT8DT9:DA6DA7_NN N 8 ? N 7 ? N 9 ? N 6 ? # _atom_sites.entry_id 1QPS _atom_sites.fract_transf_matrix[1][1] 0.008446 _atom_sites.fract_transf_matrix[1][2] 0.004876 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020121 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_