HEADER OXYGEN TRANSPORT 30-MAY-99 1QPW TITLE CRYSTAL STRUCTURE DETERMINATION OF PORCINE HEMOGLOBIN AT 1.8A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORCINE HEMOGLOBIN (ALPHA SUBUNIT); COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PORCINE HEMOGLOBIN (BETA SUBUNIT); COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 OTHER_DETAILS: TAIWANESE PIG FROM SLAUGHTERHOUSE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 8 ORGANISM_COMMON: PIG; SOURCE 9 ORGANISM_TAXID: 9823; SOURCE 10 OTHER_DETAILS: TAIWANESE PIG FROM SLAUGHTERHOUSE KEYWDS X-RAY STUDY, PORCINE HEMOGLOBIN, ARTIFICIAL HUMAN BLOOD, OXYGEN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.LU,K.PANNEERSELVAM,Y.-C.LIAW,P.KAN,C.-J.LEE REVDAT 6 14-FEB-24 1QPW 1 REMARK SEQADV LINK REVDAT 5 04-OCT-17 1QPW 1 REMARK REVDAT 4 24-FEB-09 1QPW 1 VERSN REVDAT 3 01-APR-03 1QPW 1 JRNL REVDAT 2 06-MAR-00 1QPW 1 JRNL REVDAT 1 04-JUN-99 1QPW 0 JRNL AUTH T.H.LU,K.PANNEERSELVAM,Y.C.LIAW,P.KAN,C.J.LEE JRNL TITL STRUCTURE DETERMINATION OF PORCINE HAEMOGLOBIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 304 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10713517 JRNL DOI 10.1107/S0907444900000093 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.S.KATZ,S.P.WHITE,W.HUANG,R.KUMAR,D.W.CHRISTIANSON REMARK 1 TITL STRUCTURE DETERMINATION OF AQUOMET PORCINE HEMOGLOBIN AT REMARK 1 TITL 2 2.8A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 244 541 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1994.1751 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 36820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION OF 10% OF REMARK 3 THE OBSERVED REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3682 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 574 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 3.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000009125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-91 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36820 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.05800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M OF PHOSPHATE SOLUTION, PH 6.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.42500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.42500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 58 NE2 HIS A 58 CD2 -0.076 REMARK 500 HIS A 72 NE2 HIS A 72 CD2 -0.075 REMARK 500 HIS A 87 CE1 HIS A 87 NE2 -0.089 REMARK 500 HIS A 87 NE2 HIS A 87 CD2 -0.083 REMARK 500 HIS A 103 NE2 HIS A 103 CD2 -0.074 REMARK 500 HIS A 122 NE2 HIS A 122 CD2 -0.071 REMARK 500 HIS B 63 NE2 HIS B 63 CD2 -0.070 REMARK 500 HIS B 92 NE2 HIS B 92 CD2 -0.117 REMARK 500 HIS B 97 NE2 HIS B 97 CD2 -0.078 REMARK 500 HIS C 45 NE2 HIS C 45 CD2 -0.073 REMARK 500 HIS C 58 NE2 HIS C 58 CD2 -0.069 REMARK 500 HIS C 87 CE1 HIS C 87 NE2 -0.067 REMARK 500 HIS C 87 NE2 HIS C 87 CD2 -0.137 REMARK 500 HIS D 92 CE1 HIS D 92 NE2 -0.075 REMARK 500 HIS D 92 NE2 HIS D 92 CD2 -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 14 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 14 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 42 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 HIS A 45 CE1 - NE2 - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 HIS A 87 CE1 - NE2 - CD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 THR A 137 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP B 15 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 15 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TRP B 37 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP B 37 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE B 71 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 LYS B 76 CA - C - N ANGL. DEV. = -17.3 DEGREES REMARK 500 HIS B 92 CE1 - NE2 - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 94 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 99 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 117 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR B 145 CA - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 HIS B 146 CG - ND1 - CE1 ANGL. DEV. = 8.1 DEGREES REMARK 500 TRP C 14 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP C 14 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG C 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 HIS C 87 ND1 - CE1 - NE2 ANGL. DEV. = -9.5 DEGREES REMARK 500 HIS C 87 CE1 - NE2 - CD2 ANGL. DEV. = 15.6 DEGREES REMARK 500 HIS C 87 CG - CD2 - NE2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP C 116 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG C 141 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP D 15 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP D 15 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 VAL D 18 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG D 30 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG D 30 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 TRP D 37 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP D 37 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP D 37 CG - CD2 - CE3 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG D 40 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU D 43 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 HIS D 92 ND1 - CE1 - NE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 HIS D 92 CE1 - NE2 - CD2 ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG D 104 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 104 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 116 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG D 116 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG D 117 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG D 117 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 93.73 62.71 REMARK 500 PRO A 37 -12.81 -42.77 REMARK 500 PHE A 43 46.14 -100.42 REMARK 500 HIS A 72 34.60 -143.58 REMARK 500 ASP A 75 58.79 -162.96 REMARK 500 TYR B 35 77.32 -115.68 REMARK 500 LYS B 76 82.09 62.28 REMARK 500 HIS B 77 5.88 162.25 REMARK 500 LYS B 144 9.45 -69.35 REMARK 500 TYR B 145 -93.41 -72.78 REMARK 500 HIS C 72 60.62 -107.30 REMARK 500 LEU C 80 48.71 -92.71 REMARK 500 HIS C 113 55.62 -143.93 REMARK 500 SER D 4 -172.22 -65.18 REMARK 500 ASP D 21 46.79 -86.98 REMARK 500 GLU D 22 -49.23 -148.31 REMARK 500 ASN D 50 152.94 175.73 REMARK 500 HIS D 77 35.00 -145.14 REMARK 500 CYS D 93 -72.98 -59.13 REMARK 500 PHE D 122 67.36 -106.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 145 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 650 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 650 NA 76.1 REMARK 620 3 HEM A 650 NB 82.0 89.1 REMARK 620 4 HEM A 650 NC 100.9 177.0 90.8 REMARK 620 5 HEM A 650 ND 92.6 91.3 174.3 88.5 REMARK 620 6 HOH A 754 O 165.7 93.8 87.9 89.2 97.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 750 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 750 NA 96.1 REMARK 620 3 HEM B 750 NB 89.1 91.8 REMARK 620 4 HEM B 750 NC 79.3 175.3 89.3 REMARK 620 5 HEM B 750 ND 86.1 89.2 175.2 89.3 REMARK 620 6 OXY B 751 O1 171.0 82.2 99.8 102.1 85.0 REMARK 620 7 OXY B 751 O2 164.3 99.3 87.8 85.3 96.7 20.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 850 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 850 NA 91.1 REMARK 620 3 HEM C 850 NB 81.0 89.8 REMARK 620 4 HEM C 850 NC 89.2 179.6 90.1 REMARK 620 5 HEM C 850 ND 97.8 90.1 178.8 90.0 REMARK 620 6 OXY C 851 O1 175.2 93.3 100.8 86.3 80.4 REMARK 620 7 OXY C 851 O2 149.5 104.5 73.2 75.1 108.0 30.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 950 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 950 NA 81.2 REMARK 620 3 HEM D 950 NB 87.9 87.7 REMARK 620 4 HEM D 950 NC 87.3 168.4 90.8 REMARK 620 5 HEM D 950 ND 83.0 90.9 170.9 88.9 REMARK 620 6 HOH D1142 O 167.1 111.3 89.3 80.1 99.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 650 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY B 751 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 850 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY C 851 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 950 DBREF 1QPW A 1 141 UNP P01965 HBA_PIG 1 141 DBREF 1QPW B 1 146 UNP P02067 HBB_PIG 1 146 DBREF 1QPW C 1 141 UNP P01965 HBA_PIG 1 141 DBREF 1QPW D 1 146 UNP P02067 HBB_PIG 1 146 SEQADV 1QPW ASP B 125 UNP P01965 ASN 125 CONFLICT SEQADV 1QPW ASP D 125 UNP P02067 ASN 125 CONFLICT SEQRES 1 A 141 VAL LEU SER ALA ALA ASP LYS ALA ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY GLY GLN ALA GLY ALA HIS GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU GLY PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASN LEU SER HIS GLY SER SEQRES 5 A 141 ASP GLN VAL LYS ALA HIS GLY GLN LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR LYS ALA VAL GLY HIS LEU ASP ASP LEU PRO GLY SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS HIS PRO ASP ASP PHE SEQRES 10 A 141 ASN PRO SER VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 ASN VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU SER ALA GLU GLU LYS GLU ALA VAL LEU GLY SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER ASN ALA ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLN SER PHE SER ASP GLY LEU LYS HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA LYS LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP GLN LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL ILE VAL VAL VAL LEU ALA ARG ARG SEQRES 10 B 146 LEU GLY HIS ASP PHE ASN PRO ASP VAL GLN ALA ALA PHE SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER ALA ALA ASP LYS ALA ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY GLY GLN ALA GLY ALA HIS GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU GLY PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASN LEU SER HIS GLY SER SEQRES 5 C 141 ASP GLN VAL LYS ALA HIS GLY GLN LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR LYS ALA VAL GLY HIS LEU ASP ASP LEU PRO GLY SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS HIS PRO ASP ASP PHE SEQRES 10 C 141 ASN PRO SER VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 ASN VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU SER ALA GLU GLU LYS GLU ALA VAL LEU GLY SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER ASN ALA ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLN SER PHE SER ASP GLY LEU LYS HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA LYS LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP GLN LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL ILE VAL VAL VAL LEU ALA ARG ARG SEQRES 10 D 146 LEU GLY HIS ASP PHE ASN PRO ASP VAL GLN ALA ALA PHE SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET HEM A 650 43 HET HEM B 750 43 HET OXY B 751 2 HET HEM C 850 43 HET OXY C 851 2 HET HEM D 950 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 7 OXY 2(O2) FORMUL 11 HOH *574(H2 O) HELIX 1 1 SER A 3 LYS A 16 1 14 HELIX 2 2 VAL A 17 GLY A 19 5 3 HELIX 3 3 GLN A 20 PHE A 36 1 17 HELIX 4 4 THR A 38 PHE A 43 5 6 HELIX 5 5 SER A 52 GLY A 71 1 20 HELIX 6 6 HIS A 72 ASP A 74 5 3 HELIX 7 7 ASP A 75 ALA A 88 1 14 HELIX 8 8 ASP A 94 HIS A 113 1 20 HELIX 9 9 PRO A 114 PHE A 117 5 4 HELIX 10 10 ASN A 118 THR A 137 1 20 HELIX 11 11 SER B 4 GLY B 16 1 13 HELIX 12 12 ASN B 19 TYR B 35 1 17 HELIX 13 13 PRO B 36 GLU B 43 5 8 HELIX 14 14 PHE B 42 GLY B 46 5 5 HELIX 15 15 ASN B 50 MET B 55 1 6 HELIX 16 16 ASN B 57 LEU B 75 1 19 HELIX 17 17 HIS B 77 ASP B 79 5 3 HELIX 18 18 ASN B 80 GLN B 95 1 16 HELIX 19 19 PRO B 100 GLY B 119 1 20 HELIX 20 20 HIS B 120 PHE B 122 5 3 HELIX 21 21 ASN B 123 ALA B 142 1 20 HELIX 22 22 SER C 3 GLY C 18 1 16 HELIX 23 23 GLN C 20 PHE C 36 1 17 HELIX 24 24 PRO C 37 PHE C 43 5 7 HELIX 25 25 SER C 52 HIS C 72 1 21 HELIX 26 26 ASP C 75 LEU C 80 1 6 HELIX 27 27 LEU C 80 HIS C 89 1 10 HELIX 28 28 ASP C 94 HIS C 113 1 20 HELIX 29 29 ASN C 118 SER C 138 1 21 HELIX 30 30 SER D 4 GLY D 16 1 13 HELIX 31 31 ASN D 19 TYR D 35 1 17 HELIX 32 32 PRO D 36 GLU D 43 5 8 HELIX 33 33 PHE D 42 GLY D 46 5 5 HELIX 34 34 ASN D 50 GLY D 56 1 7 HELIX 35 35 ASN D 57 LYS D 76 1 20 HELIX 36 36 HIS D 77 ASP D 79 5 3 HELIX 37 37 ASN D 80 ASP D 94 1 15 HELIX 38 38 PRO D 100 GLY D 119 1 20 HELIX 39 39 HIS D 120 PHE D 122 5 3 HELIX 40 40 ASN D 123 ALA D 142 1 20 LINK NE2 HIS A 87 FE HEM A 650 1555 1555 2.75 LINK FE HEM A 650 O HOH A 754 1555 1555 1.87 LINK NE2 HIS B 92 FE HEM B 750 1555 1555 2.85 LINK FE HEM B 750 O1 OXY B 751 1555 1555 1.85 LINK FE HEM B 750 O2 OXY B 751 1555 1555 2.76 LINK NE2 HIS C 87 FE HEM C 850 1555 1555 2.87 LINK FE HEM C 850 O1 OXY C 851 1555 1555 1.87 LINK FE HEM C 850 O2 OXY C 851 1555 1555 2.39 LINK NE2 HIS D 92 FE HEM D 950 1555 1555 2.88 LINK FE HEM D 950 O HOH D1142 1555 1555 2.00 SITE 1 AC1 12 PHE A 43 HIS A 45 HIS A 58 LYS A 61 SITE 2 AC1 12 LEU A 83 HIS A 87 LEU A 91 ASN A 97 SITE 3 AC1 12 PHE A 98 LEU A 101 HOH A 754 ALA C 12 SITE 1 AC2 14 PHE B 41 HIS B 63 SER B 70 LEU B 91 SITE 2 AC2 14 HIS B 92 LEU B 96 ASN B 102 LEU B 106 SITE 3 AC2 14 LEU B 141 OXY B 751 HOH B 845 HOH B 856 SITE 4 AC2 14 HIS C 50 HIS D 120 SITE 1 AC3 2 HIS B 63 HEM B 750 SITE 1 AC4 14 TYR C 42 PHE C 43 HIS C 45 HIS C 58 SITE 2 AC4 14 LYS C 61 LEU C 83 HIS C 87 LEU C 91 SITE 3 AC4 14 VAL C 93 ASN C 97 PHE C 98 LEU C 101 SITE 4 AC4 14 OXY C 851 HOH D1136 SITE 1 AC5 3 HIS C 58 VAL C 62 HEM C 850 SITE 1 AC6 15 HOH B 837 PHE D 41 PHE D 42 PHE D 45 SITE 2 AC6 15 HIS D 63 LYS D 66 SER D 70 LEU D 91 SITE 3 AC6 15 HIS D 92 LEU D 96 VAL D 98 ASN D 102 SITE 4 AC6 15 LEU D 106 LEU D 141 HOH D1142 CRYST1 68.100 72.270 114.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008707 0.00000