HEADER SIGNALING PROTEIN INHIBITOR 29-AUG-03 1QVY TITLE CRYSTAL STRUCTURE OF RHOGDI K(199,200)R DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GDP-DISSOCIATION INHIBITOR 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: RHO GDI 1; RHO-GDI ALPHA; RHO GDP DISSOCIATION INHIBITOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL-10 GOLD, EPICURIAN COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGST-PARALLEL KEYWDS PROTEIN CRYSTALLIZATION; RATIONAL SURFACE MUTAGENESIS; RHOGDI; HIGH KEYWDS 2 RESOLUTION; X-RAY DIFFRACTION, SIGNALING PROTEIN INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.CZEPAS,Y.DEVEDJIEV,D.KROWARSH,U.DEREWENDA,Z.S.DEREWENDA REVDAT 4 16-AUG-23 1QVY 1 REMARK REVDAT 3 27-OCT-21 1QVY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1QVY 1 VERSN REVDAT 1 10-FEB-04 1QVY 0 JRNL AUTH J.CZEPAS,Y.DEVEDJIEV,D.KROWARSCH,U.DEREWENDA,J.OTLEWSKI, JRNL AUTH 2 Z.S.DEREWENDA JRNL TITL THE IMPACT OF LYS-->ARG SURFACE MUTATIONS ON THE JRNL TITL 2 CRYSTALLIZATION OF THE GLOBULAR DOMAIN OF RHOGDI. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 275 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14747703 JRNL DOI 10.1107/S0907444903026271 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 82684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 779 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.580 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4604 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4144 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6220 ; 1.719 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9664 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 6.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 869 ;18.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4988 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 956 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 668 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4936 ; 0.259 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2962 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 514 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.124 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 98 ; 0.316 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2740 ; 1.362 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4452 ; 2.267 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1864 ; 3.097 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1768 ; 4.753 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4604 ; 1.711 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 777 ; 4.300 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4512 ; 2.369 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1QVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9190 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MONOCHROMATOR , MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84662 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1KMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1 M TRIS, 0.2 M LITHIUM REMARK 280 SULFATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 66 REMARK 465 MET B 66 REMARK 465 MET C 66 REMARK 465 MET D 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 1118 O HOH D 1169 1.86 REMARK 500 OD2 ASP A 204 O HOH A 1148 2.07 REMARK 500 O HOH D 1106 O HOH D 1206 2.10 REMARK 500 O HOH C 1125 O HOH C 1148 2.12 REMARK 500 OE1 GLU A 155 O HOH A 1119 2.14 REMARK 500 O HOH D 1137 O HOH D 1177 2.16 REMARK 500 OD2 ASP D 201 O HOH D 1166 2.17 REMARK 500 OE1 GLU D 164 O HOH D 1203 2.17 REMARK 500 OD2 ASP C 204 O HOH C 1080 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1109 O HOH C 1148 2557 2.04 REMARK 500 O HOH B 1126 O HOH C 1125 2557 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU B 196 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP B 201 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU C 77 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG C 134 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP C 140 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG C 172 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP C 201 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP D 204 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 203 -30.52 -132.80 REMARK 500 ARG B 120 -35.08 -137.00 REMARK 500 THR B 182 -155.04 -151.49 REMARK 500 ARG C 120 -17.21 -146.67 REMARK 500 ARG D 120 -40.46 -135.64 REMARK 500 THR D 182 -158.44 -150.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 1126 REMARK 615 HOH B 1042 REMARK 615 HOH B 1128 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1008 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RHO RELATED DB: PDB REMARK 900 THE SAME PROTEIN WILD TYPE REMARK 900 RELATED ID: 1KMT RELATED DB: PDB REMARK 900 THE SAME PROTEIN E(154,155) DOUBLE MUTANT DBREF 1QVY A 67 204 UNP P52565 GDIR_HUMAN 67 204 DBREF 1QVY B 67 204 UNP P52565 GDIR_HUMAN 67 204 DBREF 1QVY C 67 204 UNP P52565 GDIR_HUMAN 67 204 DBREF 1QVY D 67 204 UNP P52565 GDIR_HUMAN 67 204 SEQADV 1QVY MET A 66 UNP P52565 CLONING ARTIFACT SEQADV 1QVY ARG A 199 UNP P52565 LYS 199 ENGINEERED MUTATION SEQADV 1QVY ARG A 200 UNP P52565 LYS 200 ENGINEERED MUTATION SEQADV 1QVY MET B 66 UNP P52565 CLONING ARTIFACT SEQADV 1QVY ARG B 199 UNP P52565 LYS 199 ENGINEERED MUTATION SEQADV 1QVY ARG B 200 UNP P52565 LYS 200 ENGINEERED MUTATION SEQADV 1QVY MET C 66 UNP P52565 CLONING ARTIFACT SEQADV 1QVY ARG C 199 UNP P52565 LYS 199 ENGINEERED MUTATION SEQADV 1QVY ARG C 200 UNP P52565 LYS 200 ENGINEERED MUTATION SEQADV 1QVY MET D 66 UNP P52565 CLONING ARTIFACT SEQADV 1QVY ARG D 199 UNP P52565 LYS 199 ENGINEERED MUTATION SEQADV 1QVY ARG D 200 UNP P52565 LYS 200 ENGINEERED MUTATION SEQRES 1 A 139 MET VAL PRO ASN VAL VAL VAL THR GLY LEU THR LEU VAL SEQRES 2 A 139 CYS SER SER ALA PRO GLY PRO LEU GLU LEU ASP LEU THR SEQRES 3 A 139 GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL LEU SEQRES 4 A 139 LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE ARG SEQRES 5 A 139 VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE GLN SEQRES 6 A 139 HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR ASP SEQRES 7 A 139 TYR MET VAL GLY SER TYR GLY PRO ARG ALA GLU GLU TYR SEQRES 8 A 139 GLU PHE LEU THR PRO VAL GLU GLU ALA PRO LYS GLY MET SEQRES 9 A 139 LEU ALA ARG GLY SER TYR SER ILE LYS SER ARG PHE THR SEQRES 10 A 139 ASP ASP ASP LYS THR ASP HIS LEU SER TRP GLU TRP ASN SEQRES 11 A 139 LEU THR ILE ARG ARG ASP TRP LYS ASP SEQRES 1 B 139 MET VAL PRO ASN VAL VAL VAL THR GLY LEU THR LEU VAL SEQRES 2 B 139 CYS SER SER ALA PRO GLY PRO LEU GLU LEU ASP LEU THR SEQRES 3 B 139 GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL LEU SEQRES 4 B 139 LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE ARG SEQRES 5 B 139 VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE GLN SEQRES 6 B 139 HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR ASP SEQRES 7 B 139 TYR MET VAL GLY SER TYR GLY PRO ARG ALA GLU GLU TYR SEQRES 8 B 139 GLU PHE LEU THR PRO VAL GLU GLU ALA PRO LYS GLY MET SEQRES 9 B 139 LEU ALA ARG GLY SER TYR SER ILE LYS SER ARG PHE THR SEQRES 10 B 139 ASP ASP ASP LYS THR ASP HIS LEU SER TRP GLU TRP ASN SEQRES 11 B 139 LEU THR ILE ARG ARG ASP TRP LYS ASP SEQRES 1 C 139 MET VAL PRO ASN VAL VAL VAL THR GLY LEU THR LEU VAL SEQRES 2 C 139 CYS SER SER ALA PRO GLY PRO LEU GLU LEU ASP LEU THR SEQRES 3 C 139 GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL LEU SEQRES 4 C 139 LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE ARG SEQRES 5 C 139 VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE GLN SEQRES 6 C 139 HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR ASP SEQRES 7 C 139 TYR MET VAL GLY SER TYR GLY PRO ARG ALA GLU GLU TYR SEQRES 8 C 139 GLU PHE LEU THR PRO VAL GLU GLU ALA PRO LYS GLY MET SEQRES 9 C 139 LEU ALA ARG GLY SER TYR SER ILE LYS SER ARG PHE THR SEQRES 10 C 139 ASP ASP ASP LYS THR ASP HIS LEU SER TRP GLU TRP ASN SEQRES 11 C 139 LEU THR ILE ARG ARG ASP TRP LYS ASP SEQRES 1 D 139 MET VAL PRO ASN VAL VAL VAL THR GLY LEU THR LEU VAL SEQRES 2 D 139 CYS SER SER ALA PRO GLY PRO LEU GLU LEU ASP LEU THR SEQRES 3 D 139 GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL LEU SEQRES 4 D 139 LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE ARG SEQRES 5 D 139 VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE GLN SEQRES 6 D 139 HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR ASP SEQRES 7 D 139 TYR MET VAL GLY SER TYR GLY PRO ARG ALA GLU GLU TYR SEQRES 8 D 139 GLU PHE LEU THR PRO VAL GLU GLU ALA PRO LYS GLY MET SEQRES 9 D 139 LEU ALA ARG GLY SER TYR SER ILE LYS SER ARG PHE THR SEQRES 10 D 139 ASP ASP ASP LYS THR ASP HIS LEU SER TRP GLU TRP ASN SEQRES 11 D 139 LEU THR ILE ARG ARG ASP TRP LYS ASP HET SO4 A1001 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 B1002 5 HET SO4 B1007 5 HET SO4 C1003 5 HET SO4 D1004 5 HET SO4 D1008 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 8(O4 S 2-) FORMUL 13 HOH *779(H2 O) HELIX 1 1 ASP A 93 GLN A 100 5 8 HELIX 2 2 GLY A 168 ARG A 172 5 5 HELIX 3 3 ASP B 93 GLN B 100 5 8 HELIX 4 4 GLY B 168 ARG B 172 5 5 HELIX 5 5 ASP C 93 LYS C 98 1 6 HELIX 6 6 GLY C 168 ARG C 172 5 5 HELIX 7 7 ASP D 93 GLN D 100 5 8 HELIX 8 8 GLY D 168 ARG D 172 5 5 SHEET 1 A 4 GLU A 87 ASP A 89 0 SHEET 2 A 4 VAL A 70 VAL A 78 -1 N LEU A 75 O LEU A 88 SHEET 3 A 4 GLU A 109 VAL A 118 -1 O ARG A 111 N VAL A 78 SHEET 4 A 4 TYR A 156 LEU A 159 -1 O TYR A 156 N PHE A 116 SHEET 1 B 4 GLU A 87 ASP A 89 0 SHEET 2 B 4 VAL A 70 VAL A 78 -1 N LEU A 75 O LEU A 88 SHEET 3 B 4 GLU A 109 VAL A 118 -1 O ARG A 111 N VAL A 78 SHEET 4 B 4 GLU A 163 GLU A 164 -1 O GLU A 163 N TYR A 110 SHEET 1 C 5 PHE A 102 LYS A 105 0 SHEET 2 C 5 LEU A 190 ARG A 199 1 O THR A 197 N PHE A 102 SHEET 3 C 5 GLY A 173 THR A 182 -1 N ILE A 177 O TRP A 194 SHEET 4 C 5 VAL A 123 ARG A 134 -1 N TYR A 133 O SER A 176 SHEET 5 C 5 VAL A 137 TYR A 149 -1 O ILE A 139 N THR A 132 SHEET 1 D 4 GLU B 87 ASP B 89 0 SHEET 2 D 4 VAL B 70 VAL B 78 -1 N LEU B 75 O LEU B 88 SHEET 3 D 4 GLU B 109 VAL B 118 -1 O ARG B 117 N VAL B 71 SHEET 4 D 4 TYR B 156 LEU B 159 -1 O TYR B 156 N PHE B 116 SHEET 1 E 4 GLU B 87 ASP B 89 0 SHEET 2 E 4 VAL B 70 VAL B 78 -1 N LEU B 75 O LEU B 88 SHEET 3 E 4 GLU B 109 VAL B 118 -1 O ARG B 117 N VAL B 71 SHEET 4 E 4 GLU B 163 GLU B 164 -1 O GLU B 163 N TYR B 110 SHEET 1 F 5 PHE B 102 LYS B 105 0 SHEET 2 F 5 LEU B 190 ARG B 199 1 O THR B 197 N PHE B 102 SHEET 3 F 5 GLY B 173 ASP B 183 -1 N ILE B 177 O TRP B 194 SHEET 4 F 5 VAL B 123 ARG B 134 -1 N TYR B 133 O SER B 176 SHEET 5 F 5 VAL B 137 TYR B 149 -1 O ILE B 139 N THR B 132 SHEET 1 G 4 GLU C 87 ASP C 89 0 SHEET 2 G 4 VAL C 70 VAL C 78 -1 N LEU C 75 O LEU C 88 SHEET 3 G 4 GLU C 109 VAL C 118 -1 O ARG C 111 N VAL C 78 SHEET 4 G 4 TYR C 156 LEU C 159 -1 O TYR C 156 N PHE C 116 SHEET 1 H 4 GLU C 87 ASP C 89 0 SHEET 2 H 4 VAL C 70 VAL C 78 -1 N LEU C 75 O LEU C 88 SHEET 3 H 4 GLU C 109 VAL C 118 -1 O ARG C 111 N VAL C 78 SHEET 4 H 4 GLU C 163 GLU C 164 -1 O GLU C 163 N TYR C 110 SHEET 1 I 5 PHE C 102 LYS C 105 0 SHEET 2 I 5 LEU C 190 ARG C 199 1 O THR C 197 N PHE C 102 SHEET 3 I 5 GLY C 173 THR C 182 -1 N ILE C 177 O TRP C 194 SHEET 4 I 5 VAL C 123 ARG C 134 -1 N TYR C 133 O SER C 176 SHEET 5 I 5 VAL C 137 TYR C 149 -1 O ILE C 139 N THR C 132 SHEET 1 J 4 GLU D 87 ASP D 89 0 SHEET 2 J 4 VAL D 70 VAL D 78 -1 N LEU D 75 O LEU D 88 SHEET 3 J 4 GLU D 109 VAL D 118 -1 O ARG D 111 N VAL D 78 SHEET 4 J 4 TYR D 156 LEU D 159 -1 O TYR D 156 N PHE D 116 SHEET 1 K 4 GLU D 87 ASP D 89 0 SHEET 2 K 4 VAL D 70 VAL D 78 -1 N LEU D 75 O LEU D 88 SHEET 3 K 4 GLU D 109 VAL D 118 -1 O ARG D 111 N VAL D 78 SHEET 4 K 4 GLU D 163 GLU D 164 -1 O GLU D 163 N TYR D 110 SHEET 1 L 5 PHE D 102 LYS D 105 0 SHEET 2 L 5 LEU D 190 ARG D 199 1 O THR D 197 N PHE D 102 SHEET 3 L 5 GLY D 173 ASP D 183 -1 N ILE D 177 O TRP D 194 SHEET 4 L 5 VAL D 123 ARG D 134 -1 N TYR D 133 O SER D 176 SHEET 5 L 5 VAL D 137 TYR D 149 -1 O ILE D 139 N THR D 132 SITE 1 AC1 8 ARG A 199 ARG A 200 HOH A1096 HOH A1140 SITE 2 AC1 8 HOH A1142 HOH A1148 HOH A1172 ARG B 199 SITE 1 AC2 7 ARG A 199 ARG B 172 ARG B 199 ARG B 200 SITE 2 AC2 7 HOH B1113 HOH B1158 HOH B1223 SITE 1 AC3 6 ARG C 199 ARG C 200 HOH C1063 HOH C1074 SITE 2 AC3 6 HOH C1080 ARG D 199 SITE 1 AC4 6 ARG C 199 ARG D 172 ARG D 199 ARG D 200 SITE 2 AC4 6 HOH D1067 HOH D1115 SITE 1 AC5 2 VAL A 78 ARG A 111 SITE 1 AC6 3 PRO A 68 ASN A 69 ARG A 120 SITE 1 AC7 5 HIS B 131 ARG B 180 HOH B1145 HOH B1181 SITE 2 AC7 5 HOH B1210 SITE 1 AC8 6 HIS D 131 ARG D 180 HOH D1056 HOH D1076 SITE 2 AC8 6 HOH D1200 HOH D1201 CRYST1 148.660 58.240 75.050 90.00 92.49 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006727 0.000000 0.000293 0.00000 SCALE2 0.000000 0.017170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013337 0.00000