data_1QWH # _entry.id 1QWH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QWH pdb_00001qwh 10.2210/pdb1qwh/pdb RCSB RCSB020151 ? ? WWPDB D_1000020151 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QWH _pdbx_database_status.recvd_initial_deposition_date 2003-09-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Foss, T.' 1 'Kelker, M.S.' 2 'Wilson, I.A.' 3 # _citation.id primary _citation.title 'Kinetic stabilization of the native state by protein engineering: implications for inhibition of transthyretin amyloidogenesis.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 347 _citation.page_first 841 _citation.page_last 854 _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15769474 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.01.050 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Foss, T.R.' 1 ? primary 'Kelker, M.S.' 2 ? primary 'Wiseman, R.L.' 3 ? primary 'Wilson, I.A.' 4 ? primary 'Kelly, J.W.' 5 ? # _cell.entry_id 1QWH _cell.length_a 43.630 _cell.length_b 86.050 _cell.length_c 63.830 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QWH _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 12858.368 2 ? ? ? 'A linker, not seen in the density, was used to link chain A and B, see remark 999.' 2 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prealbumin, TBPA, TTR, ATTR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEH AEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;PLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEH AEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LEU n 1 3 MET n 1 4 VAL n 1 5 LYS n 1 6 VAL n 1 7 LEU n 1 8 ASP n 1 9 ALA n 1 10 VAL n 1 11 ARG n 1 12 GLY n 1 13 SER n 1 14 PRO n 1 15 ALA n 1 16 ILE n 1 17 ASN n 1 18 VAL n 1 19 ALA n 1 20 VAL n 1 21 HIS n 1 22 VAL n 1 23 PHE n 1 24 ARG n 1 25 LYS n 1 26 ALA n 1 27 ALA n 1 28 ASP n 1 29 ASP n 1 30 THR n 1 31 TRP n 1 32 GLU n 1 33 PRO n 1 34 PHE n 1 35 ALA n 1 36 SER n 1 37 GLY n 1 38 LYS n 1 39 THR n 1 40 SER n 1 41 GLU n 1 42 SER n 1 43 GLY n 1 44 GLU n 1 45 LEU n 1 46 HIS n 1 47 GLY n 1 48 LEU n 1 49 THR n 1 50 THR n 1 51 GLU n 1 52 GLU n 1 53 GLU n 1 54 PHE n 1 55 VAL n 1 56 GLU n 1 57 GLY n 1 58 ILE n 1 59 TYR n 1 60 LYS n 1 61 VAL n 1 62 GLU n 1 63 ILE n 1 64 ASP n 1 65 THR n 1 66 LYS n 1 67 SER n 1 68 TYR n 1 69 TRP n 1 70 LYS n 1 71 ALA n 1 72 LEU n 1 73 GLY n 1 74 ILE n 1 75 SER n 1 76 PRO n 1 77 PHE n 1 78 HIS n 1 79 GLU n 1 80 HIS n 1 81 ALA n 1 82 GLU n 1 83 VAL n 1 84 VAL n 1 85 PHE n 1 86 THR n 1 87 ALA n 1 88 ASN n 1 89 ASP n 1 90 SER n 1 91 GLY n 1 92 PRO n 1 93 ARG n 1 94 ARG n 1 95 TYR n 1 96 THR n 1 97 ILE n 1 98 ALA n 1 99 ALA n 1 100 LEU n 1 101 LEU n 1 102 SER n 1 103 PRO n 1 104 TYR n 1 105 SER n 1 106 TYR n 1 107 SER n 1 108 THR n 1 109 THR n 1 110 ALA n 1 111 VAL n 1 112 VAL n 1 113 THR n 1 114 ASN n 1 115 PRO n 1 116 LYS n 1 117 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET29b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEH AEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QWH A 1 ? 117 ? P02766 31 ? 147 ? 11 127 2 1 1QWH B 1 ? 117 ? P02766 31 ? 147 ? 11 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1QWH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details 'PEG 4000, 0.2 M Magnesium Nitrate , pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2003-03-28 _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(311) bent monochromator (ho rizontal focusing)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(311)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 # _reflns.entry_id 1QWH _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.36 _reflns.number_obs 48411 _reflns.number_all 48411 _reflns.percent_possible_obs 92.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.053 _reflns.pdbx_netI_over_sigmaI 24.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.36 _reflns_shell.d_res_low 29.88 _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.539 _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1QWH _refine.ls_number_reflns_obs 48380 _refine.ls_number_reflns_all 48411 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.88 _refine.ls_d_res_high 1.36 _refine.ls_percent_reflns_obs 92.34 _refine.ls_R_factor_obs 0.21571 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21534 _refine.ls_R_factor_R_free 0.22246 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2427 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 14.855 _refine.aniso_B[1][1] -0.12 _refine.aniso_B[2][2] -0.19 _refine.aniso_B[3][3] 0.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1DVQ.pdb' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.064 _refine.pdbx_overall_ESU_R_Free 0.063 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 0.914 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1674 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1799 _refine_hist.d_res_high 1.36 _refine_hist.d_res_low 29.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 1717 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.560 1.934 ? 2334 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.987 5.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 271 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1273 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 655 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.102 0.200 ? 95 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.151 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.156 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.360 _refine_ls_shell.d_res_low 1.395 _refine_ls_shell.number_reflns_R_work 3482 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.272 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 166 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1QWH _struct.title 'a covalent dimer of transthyretin that affects the amyloid pathway' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QWH _struct_keywords.pdbx_keywords 'HORMONE/GROWTH FACTOR' _struct_keywords.text ;thyroid hormone, liver, plasma, cerebrospinal fluid, polyneuropathy, disease mutation, transport, thyroxine, binding protein, HORMONE-GROWTH FACTOR COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 64 ? LEU A 72 ? ASP A 74 LEU A 82 1 ? 9 HELX_P HELX_P2 2 ASP B 64 ? LEU B 72 ? ASP B 74 LEU B 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 13 ? PRO A 14 ? SER A 23 PRO A 24 A 2 LEU A 2 ? ASP A 8 ? LEU A 12 ASP A 18 A 3 ARG A 94 ? SER A 102 ? ARG A 104 SER A 112 A 4 SER A 105 ? THR A 113 ? SER A 115 THR A 123 A 5 SER B 105 ? VAL B 112 ? SER B 115 VAL B 122 A 6 TYR B 95 ? SER B 102 ? TYR B 105 SER B 112 A 7 LEU B 2 ? ASP B 8 ? LEU B 12 ASP B 18 A 8 SER B 13 ? PRO B 14 ? SER B 23 PRO B 24 B 1 GLU A 44 ? LEU A 45 ? GLU A 54 LEU A 55 B 2 LEU A 2 ? ASP A 8 ? LEU A 12 ASP A 18 B 3 ARG A 94 ? SER A 102 ? ARG A 104 SER A 112 B 4 SER A 105 ? THR A 113 ? SER A 115 THR A 123 B 5 SER B 105 ? VAL B 112 ? SER B 115 VAL B 122 B 6 TYR B 95 ? SER B 102 ? TYR B 105 SER B 112 B 7 LEU B 2 ? ASP B 8 ? LEU B 12 ASP B 18 B 8 GLU B 44 ? LEU B 45 ? GLU B 54 LEU B 55 C 1 TRP A 31 ? LYS A 38 ? TRP A 41 LYS A 48 C 2 ALA A 19 ? LYS A 25 ? ALA A 29 LYS A 35 C 3 GLY A 57 ? ILE A 63 ? GLY A 67 ILE A 73 C 4 HIS A 78 ? ALA A 87 ? HIS A 88 ALA A 97 C 5 HIS B 78 ? ALA B 87 ? HIS B 88 ALA B 97 C 6 GLY B 57 ? ILE B 63 ? GLY B 67 ILE B 73 C 7 ALA B 19 ? LYS B 25 ? ALA B 29 LYS B 35 C 8 TRP B 31 ? LYS B 38 ? TRP B 41 LYS B 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 13 ? O SER A 23 N ASP A 8 ? N ASP A 18 A 2 3 N MET A 3 ? N MET A 13 O ILE A 97 ? O ILE A 107 A 3 4 N ALA A 98 ? N ALA A 108 O THR A 109 ? O THR A 119 A 4 5 N THR A 108 ? N THR A 118 O TYR B 106 ? O TYR B 116 A 5 6 O THR B 109 ? O THR B 119 N ALA B 98 ? N ALA B 108 A 6 7 O ILE B 97 ? O ILE B 107 N MET B 3 ? N MET B 13 A 7 8 N ASP B 8 ? N ASP B 18 O SER B 13 ? O SER B 23 B 1 2 O LEU A 45 ? O LEU A 55 N VAL A 4 ? N VAL A 14 B 2 3 N MET A 3 ? N MET A 13 O ILE A 97 ? O ILE A 107 B 3 4 N ALA A 98 ? N ALA A 108 O THR A 109 ? O THR A 119 B 4 5 N THR A 108 ? N THR A 118 O TYR B 106 ? O TYR B 116 B 5 6 O THR B 109 ? O THR B 119 N ALA B 98 ? N ALA B 108 B 6 7 O ILE B 97 ? O ILE B 107 N MET B 3 ? N MET B 13 B 7 8 N VAL B 4 ? N VAL B 14 O LEU B 45 ? O LEU B 55 C 1 2 O ALA A 35 ? O ALA A 45 N VAL A 22 ? N VAL A 32 C 2 3 N HIS A 21 ? N HIS A 31 O GLU A 62 ? O GLU A 72 C 3 4 N ILE A 63 ? N ILE A 73 O ALA A 81 ? O ALA A 91 C 4 5 N VAL A 84 ? N VAL A 94 O GLU B 79 ? O GLU B 89 C 5 6 O ALA B 81 ? O ALA B 91 N ILE B 63 ? N ILE B 73 C 6 7 O GLU B 62 ? O GLU B 72 N HIS B 21 ? N HIS B 31 C 7 8 N VAL B 22 ? N VAL B 32 O ALA B 35 ? O ALA B 45 # _database_PDB_matrix.entry_id 1QWH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QWH _atom_sites.fract_transf_matrix[1][1] 0.022920 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015667 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 11 11 PRO PRO A . n A 1 2 LEU 2 12 12 LEU LEU A . n A 1 3 MET 3 13 13 MET MET A . n A 1 4 VAL 4 14 14 VAL VAL A . n A 1 5 LYS 5 15 15 LYS LYS A . n A 1 6 VAL 6 16 16 VAL VAL A . n A 1 7 LEU 7 17 17 LEU LEU A . n A 1 8 ASP 8 18 18 ASP ASP A . n A 1 9 ALA 9 19 19 ALA ALA A . n A 1 10 VAL 10 20 20 VAL VAL A . n A 1 11 ARG 11 21 21 ARG ARG A . n A 1 12 GLY 12 22 22 GLY GLY A . n A 1 13 SER 13 23 23 SER SER A . n A 1 14 PRO 14 24 24 PRO PRO A . n A 1 15 ALA 15 25 25 ALA ALA A . n A 1 16 ILE 16 26 26 ILE ILE A . n A 1 17 ASN 17 27 27 ASN ASN A . n A 1 18 VAL 18 28 28 VAL VAL A . n A 1 19 ALA 19 29 29 ALA ALA A . n A 1 20 VAL 20 30 30 VAL VAL A . n A 1 21 HIS 21 31 31 HIS HIS A . n A 1 22 VAL 22 32 32 VAL VAL A . n A 1 23 PHE 23 33 33 PHE PHE A . n A 1 24 ARG 24 34 34 ARG ARG A . n A 1 25 LYS 25 35 35 LYS LYS A . n A 1 26 ALA 26 36 36 ALA ALA A . n A 1 27 ALA 27 37 ? ? ? A . n A 1 28 ASP 28 38 ? ? ? A . n A 1 29 ASP 29 39 39 ASP ASP A . n A 1 30 THR 30 40 40 THR THR A . n A 1 31 TRP 31 41 41 TRP TRP A . n A 1 32 GLU 32 42 42 GLU GLU A . n A 1 33 PRO 33 43 43 PRO PRO A . n A 1 34 PHE 34 44 44 PHE PHE A . n A 1 35 ALA 35 45 45 ALA ALA A . n A 1 36 SER 36 46 46 SER SER A . n A 1 37 GLY 37 47 47 GLY GLY A . n A 1 38 LYS 38 48 48 LYS LYS A . n A 1 39 THR 39 49 49 THR THR A . n A 1 40 SER 40 50 50 SER SER A . n A 1 41 GLU 41 51 51 GLU GLU A . n A 1 42 SER 42 52 52 SER SER A . n A 1 43 GLY 43 53 53 GLY GLY A . n A 1 44 GLU 44 54 54 GLU GLU A . n A 1 45 LEU 45 55 55 LEU LEU A . n A 1 46 HIS 46 56 56 HIS HIS A . n A 1 47 GLY 47 57 57 GLY GLY A . n A 1 48 LEU 48 58 58 LEU LEU A . n A 1 49 THR 49 59 59 THR THR A . n A 1 50 THR 50 60 60 THR THR A . n A 1 51 GLU 51 61 ? ? ? A . n A 1 52 GLU 52 62 62 GLU GLU A . n A 1 53 GLU 53 63 63 GLU GLU A . n A 1 54 PHE 54 64 64 PHE PHE A . n A 1 55 VAL 55 65 65 VAL VAL A . n A 1 56 GLU 56 66 66 GLU GLU A . n A 1 57 GLY 57 67 67 GLY GLY A . n A 1 58 ILE 58 68 68 ILE ILE A . n A 1 59 TYR 59 69 69 TYR TYR A . n A 1 60 LYS 60 70 70 LYS LYS A . n A 1 61 VAL 61 71 71 VAL VAL A . n A 1 62 GLU 62 72 72 GLU GLU A . n A 1 63 ILE 63 73 73 ILE ILE A . n A 1 64 ASP 64 74 74 ASP ASP A . n A 1 65 THR 65 75 75 THR THR A . n A 1 66 LYS 66 76 76 LYS LYS A . n A 1 67 SER 67 77 77 SER SER A . n A 1 68 TYR 68 78 78 TYR TYR A . n A 1 69 TRP 69 79 79 TRP TRP A . n A 1 70 LYS 70 80 80 LYS LYS A . n A 1 71 ALA 71 81 81 ALA ALA A . n A 1 72 LEU 72 82 82 LEU LEU A . n A 1 73 GLY 73 83 83 GLY GLY A . n A 1 74 ILE 74 84 84 ILE ILE A . n A 1 75 SER 75 85 85 SER SER A . n A 1 76 PRO 76 86 86 PRO PRO A . n A 1 77 PHE 77 87 87 PHE PHE A . n A 1 78 HIS 78 88 88 HIS HIS A . n A 1 79 GLU 79 89 89 GLU GLU A . n A 1 80 HIS 80 90 90 HIS HIS A . n A 1 81 ALA 81 91 91 ALA ALA A . n A 1 82 GLU 82 92 92 GLU GLU A . n A 1 83 VAL 83 93 93 VAL VAL A . n A 1 84 VAL 84 94 94 VAL VAL A . n A 1 85 PHE 85 95 95 PHE PHE A . n A 1 86 THR 86 96 96 THR THR A . n A 1 87 ALA 87 97 97 ALA ALA A . n A 1 88 ASN 88 98 98 ASN ASN A . n A 1 89 ASP 89 99 99 ASP ASP A . n A 1 90 SER 90 100 100 SER SER A . n A 1 91 GLY 91 101 101 GLY GLY A . n A 1 92 PRO 92 102 102 PRO PRO A . n A 1 93 ARG 93 103 103 ARG ARG A . n A 1 94 ARG 94 104 104 ARG ARG A . n A 1 95 TYR 95 105 105 TYR TYR A . n A 1 96 THR 96 106 106 THR THR A . n A 1 97 ILE 97 107 107 ILE ILE A . n A 1 98 ALA 98 108 108 ALA ALA A . n A 1 99 ALA 99 109 109 ALA ALA A . n A 1 100 LEU 100 110 110 LEU LEU A . n A 1 101 LEU 101 111 111 LEU LEU A . n A 1 102 SER 102 112 112 SER SER A . n A 1 103 PRO 103 113 113 PRO PRO A . n A 1 104 TYR 104 114 114 TYR TYR A . n A 1 105 SER 105 115 115 SER SER A . n A 1 106 TYR 106 116 116 TYR TYR A . n A 1 107 SER 107 117 117 SER SER A . n A 1 108 THR 108 118 118 THR THR A . n A 1 109 THR 109 119 119 THR THR A . n A 1 110 ALA 110 120 120 ALA ALA A . n A 1 111 VAL 111 121 121 VAL VAL A . n A 1 112 VAL 112 122 122 VAL VAL A . n A 1 113 THR 113 123 123 THR THR A . n A 1 114 ASN 114 124 ? ? ? A . n A 1 115 PRO 115 125 ? ? ? A . n A 1 116 LYS 116 126 ? ? ? A . n A 1 117 GLU 117 127 ? ? ? A . n B 1 1 PRO 1 11 11 PRO PRO B . n B 1 2 LEU 2 12 12 LEU LEU B . n B 1 3 MET 3 13 13 MET MET B . n B 1 4 VAL 4 14 14 VAL VAL B . n B 1 5 LYS 5 15 15 LYS LYS B . n B 1 6 VAL 6 16 16 VAL VAL B . n B 1 7 LEU 7 17 17 LEU LEU B . n B 1 8 ASP 8 18 18 ASP ASP B . n B 1 9 ALA 9 19 19 ALA ALA B . n B 1 10 VAL 10 20 20 VAL VAL B . n B 1 11 ARG 11 21 21 ARG ARG B . n B 1 12 GLY 12 22 22 GLY GLY B . n B 1 13 SER 13 23 23 SER SER B . n B 1 14 PRO 14 24 24 PRO PRO B . n B 1 15 ALA 15 25 25 ALA ALA B . n B 1 16 ILE 16 26 26 ILE ILE B . n B 1 17 ASN 17 27 27 ASN ASN B . n B 1 18 VAL 18 28 28 VAL VAL B . n B 1 19 ALA 19 29 29 ALA ALA B . n B 1 20 VAL 20 30 30 VAL VAL B . n B 1 21 HIS 21 31 31 HIS HIS B . n B 1 22 VAL 22 32 32 VAL VAL B . n B 1 23 PHE 23 33 33 PHE PHE B . n B 1 24 ARG 24 34 34 ARG ARG B . n B 1 25 LYS 25 35 35 LYS LYS B . n B 1 26 ALA 26 36 36 ALA ALA B . n B 1 27 ALA 27 37 37 ALA ALA B . n B 1 28 ASP 28 38 38 ASP ASP B . n B 1 29 ASP 29 39 39 ASP ASP B . n B 1 30 THR 30 40 40 THR THR B . n B 1 31 TRP 31 41 41 TRP TRP B . n B 1 32 GLU 32 42 42 GLU GLU B . n B 1 33 PRO 33 43 43 PRO PRO B . n B 1 34 PHE 34 44 44 PHE PHE B . n B 1 35 ALA 35 45 45 ALA ALA B . n B 1 36 SER 36 46 46 SER SER B . n B 1 37 GLY 37 47 47 GLY GLY B . n B 1 38 LYS 38 48 48 LYS LYS B . n B 1 39 THR 39 49 49 THR THR B . n B 1 40 SER 40 50 50 SER SER B . n B 1 41 GLU 41 51 51 GLU GLU B . n B 1 42 SER 42 52 52 SER SER B . n B 1 43 GLY 43 53 53 GLY GLY B . n B 1 44 GLU 44 54 54 GLU GLU B . n B 1 45 LEU 45 55 55 LEU LEU B . n B 1 46 HIS 46 56 56 HIS HIS B . n B 1 47 GLY 47 57 57 GLY GLY B . n B 1 48 LEU 48 58 58 LEU LEU B . n B 1 49 THR 49 59 59 THR THR B . n B 1 50 THR 50 60 60 THR THR B . n B 1 51 GLU 51 61 ? ? ? B . n B 1 52 GLU 52 62 ? ? ? B . n B 1 53 GLU 53 63 63 GLU GLU B . n B 1 54 PHE 54 64 64 PHE PHE B . n B 1 55 VAL 55 65 65 VAL VAL B . n B 1 56 GLU 56 66 66 GLU GLU B . n B 1 57 GLY 57 67 67 GLY GLY B . n B 1 58 ILE 58 68 68 ILE ILE B . n B 1 59 TYR 59 69 69 TYR TYR B . n B 1 60 LYS 60 70 70 LYS LYS B . n B 1 61 VAL 61 71 71 VAL VAL B . n B 1 62 GLU 62 72 72 GLU GLU B . n B 1 63 ILE 63 73 73 ILE ILE B . n B 1 64 ASP 64 74 74 ASP ASP B . n B 1 65 THR 65 75 75 THR THR B . n B 1 66 LYS 66 76 76 LYS LYS B . n B 1 67 SER 67 77 77 SER SER B . n B 1 68 TYR 68 78 78 TYR TYR B . n B 1 69 TRP 69 79 79 TRP TRP B . n B 1 70 LYS 70 80 80 LYS LYS B . n B 1 71 ALA 71 81 81 ALA ALA B . n B 1 72 LEU 72 82 82 LEU LEU B . n B 1 73 GLY 73 83 83 GLY GLY B . n B 1 74 ILE 74 84 84 ILE ILE B . n B 1 75 SER 75 85 85 SER SER B . n B 1 76 PRO 76 86 86 PRO PRO B . n B 1 77 PHE 77 87 87 PHE PHE B . n B 1 78 HIS 78 88 88 HIS HIS B . n B 1 79 GLU 79 89 89 GLU GLU B . n B 1 80 HIS 80 90 90 HIS HIS B . n B 1 81 ALA 81 91 91 ALA ALA B . n B 1 82 GLU 82 92 92 GLU GLU B . n B 1 83 VAL 83 93 93 VAL VAL B . n B 1 84 VAL 84 94 94 VAL VAL B . n B 1 85 PHE 85 95 95 PHE PHE B . n B 1 86 THR 86 96 96 THR THR B . n B 1 87 ALA 87 97 97 ALA ALA B . n B 1 88 ASN 88 98 98 ASN ASN B . n B 1 89 ASP 89 99 ? ? ? B . n B 1 90 SER 90 100 ? ? ? B . n B 1 91 GLY 91 101 ? ? ? B . n B 1 92 PRO 92 102 ? ? ? B . n B 1 93 ARG 93 103 ? ? ? B . n B 1 94 ARG 94 104 104 ARG ARG B . n B 1 95 TYR 95 105 105 TYR TYR B . n B 1 96 THR 96 106 106 THR THR B . n B 1 97 ILE 97 107 107 ILE ILE B . n B 1 98 ALA 98 108 108 ALA ALA B . n B 1 99 ALA 99 109 109 ALA ALA B . n B 1 100 LEU 100 110 110 LEU LEU B . n B 1 101 LEU 101 111 111 LEU LEU B . n B 1 102 SER 102 112 112 SER SER B . n B 1 103 PRO 103 113 113 PRO PRO B . n B 1 104 TYR 104 114 114 TYR TYR B . n B 1 105 SER 105 115 115 SER SER B . n B 1 106 TYR 106 116 116 TYR TYR B . n B 1 107 SER 107 117 117 SER SER B . n B 1 108 THR 108 118 118 THR THR B . n B 1 109 THR 109 119 119 THR THR B . n B 1 110 ALA 110 120 120 ALA ALA B . n B 1 111 VAL 111 121 121 VAL VAL B . n B 1 112 VAL 112 122 122 VAL VAL B . n B 1 113 THR 113 123 123 THR THR B . n B 1 114 ASN 114 124 ? ? ? B . n B 1 115 PRO 115 125 ? ? ? B . n B 1 116 LYS 116 126 ? ? ? B . n B 1 117 GLU 117 127 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 128 3 HOH WAT A . C 2 HOH 2 129 5 HOH WAT A . C 2 HOH 3 130 7 HOH WAT A . C 2 HOH 4 131 8 HOH WAT A . C 2 HOH 5 132 9 HOH WAT A . C 2 HOH 6 133 10 HOH WAT A . C 2 HOH 7 134 11 HOH WAT A . C 2 HOH 8 135 12 HOH WAT A . C 2 HOH 9 136 15 HOH WAT A . C 2 HOH 10 137 16 HOH WAT A . C 2 HOH 11 138 17 HOH WAT A . C 2 HOH 12 139 19 HOH WAT A . C 2 HOH 13 140 20 HOH WAT A . C 2 HOH 14 141 21 HOH WAT A . C 2 HOH 15 142 24 HOH WAT A . C 2 HOH 16 143 26 HOH WAT A . C 2 HOH 17 144 28 HOH WAT A . C 2 HOH 18 145 29 HOH WAT A . C 2 HOH 19 146 30 HOH WAT A . C 2 HOH 20 147 31 HOH WAT A . C 2 HOH 21 148 32 HOH WAT A . C 2 HOH 22 149 33 HOH WAT A . C 2 HOH 23 150 34 HOH WAT A . C 2 HOH 24 151 36 HOH WAT A . C 2 HOH 25 152 38 HOH WAT A . C 2 HOH 26 153 41 HOH WAT A . C 2 HOH 27 154 47 HOH WAT A . C 2 HOH 28 155 48 HOH WAT A . C 2 HOH 29 156 50 HOH WAT A . C 2 HOH 30 157 51 HOH WAT A . C 2 HOH 31 158 52 HOH WAT A . C 2 HOH 32 159 53 HOH WAT A . C 2 HOH 33 160 55 HOH WAT A . C 2 HOH 34 161 56 HOH WAT A . C 2 HOH 35 162 57 HOH WAT A . C 2 HOH 36 163 62 HOH WAT A . C 2 HOH 37 164 65 HOH WAT A . C 2 HOH 38 165 70 HOH WAT A . C 2 HOH 39 166 71 HOH WAT A . C 2 HOH 40 167 74 HOH WAT A . C 2 HOH 41 168 78 HOH WAT A . C 2 HOH 42 169 79 HOH WAT A . C 2 HOH 43 170 81 HOH WAT A . C 2 HOH 44 171 83 HOH WAT A . C 2 HOH 45 172 86 HOH WAT A . C 2 HOH 46 173 87 HOH WAT A . C 2 HOH 47 174 89 HOH WAT A . C 2 HOH 48 175 94 HOH WAT A . C 2 HOH 49 176 95 HOH WAT A . C 2 HOH 50 177 100 HOH WAT A . C 2 HOH 51 178 102 HOH WAT A . C 2 HOH 52 179 106 HOH WAT A . C 2 HOH 53 180 107 HOH WAT A . C 2 HOH 54 181 112 HOH WAT A . C 2 HOH 55 182 113 HOH WAT A . C 2 HOH 56 183 115 HOH WAT A . C 2 HOH 57 184 125 HOH WAT A . C 2 HOH 58 185 128 HOH WAT A . C 2 HOH 59 186 130 HOH WAT A . C 2 HOH 60 187 154 HOH WAT A . C 2 HOH 61 188 158 HOH WAT A . C 2 HOH 62 189 159 HOH WAT A . C 2 HOH 63 190 160 HOH WAT A . C 2 HOH 64 191 161 HOH WAT A . C 2 HOH 65 192 162 HOH WAT A . C 2 HOH 66 193 165 HOH WAT A . C 2 HOH 67 194 168 HOH WAT A . C 2 HOH 68 195 171 HOH WAT A . C 2 HOH 69 196 179 HOH WAT A . C 2 HOH 70 197 185 HOH WAT A . D 2 HOH 1 128 1 HOH WAT B . D 2 HOH 2 129 2 HOH WAT B . D 2 HOH 3 130 4 HOH WAT B . D 2 HOH 4 131 6 HOH WAT B . D 2 HOH 5 132 13 HOH WAT B . D 2 HOH 6 133 14 HOH WAT B . D 2 HOH 7 134 18 HOH WAT B . D 2 HOH 8 135 22 HOH WAT B . D 2 HOH 9 136 23 HOH WAT B . D 2 HOH 10 137 25 HOH WAT B . D 2 HOH 11 138 27 HOH WAT B . D 2 HOH 12 139 35 HOH WAT B . D 2 HOH 13 140 37 HOH WAT B . D 2 HOH 14 141 39 HOH WAT B . D 2 HOH 15 142 40 HOH WAT B . D 2 HOH 16 143 42 HOH WAT B . D 2 HOH 17 144 43 HOH WAT B . D 2 HOH 18 145 44 HOH WAT B . D 2 HOH 19 146 45 HOH WAT B . D 2 HOH 20 147 46 HOH WAT B . D 2 HOH 21 148 61 HOH WAT B . D 2 HOH 22 149 63 HOH WAT B . D 2 HOH 23 150 64 HOH WAT B . D 2 HOH 24 151 67 HOH WAT B . D 2 HOH 25 152 68 HOH WAT B . D 2 HOH 26 153 69 HOH WAT B . D 2 HOH 27 154 72 HOH WAT B . D 2 HOH 28 155 73 HOH WAT B . D 2 HOH 29 156 75 HOH WAT B . D 2 HOH 30 157 76 HOH WAT B . D 2 HOH 31 158 77 HOH WAT B . D 2 HOH 32 159 80 HOH WAT B . D 2 HOH 33 160 82 HOH WAT B . D 2 HOH 34 161 84 HOH WAT B . D 2 HOH 35 162 88 HOH WAT B . D 2 HOH 36 163 98 HOH WAT B . D 2 HOH 37 164 101 HOH WAT B . D 2 HOH 38 165 103 HOH WAT B . D 2 HOH 39 166 117 HOH WAT B . D 2 HOH 40 167 118 HOH WAT B . D 2 HOH 41 168 120 HOH WAT B . D 2 HOH 42 169 124 HOH WAT B . D 2 HOH 43 170 127 HOH WAT B . D 2 HOH 44 171 134 HOH WAT B . D 2 HOH 45 172 148 HOH WAT B . D 2 HOH 46 173 149 HOH WAT B . D 2 HOH 47 174 163 HOH WAT B . D 2 HOH 48 175 167 HOH WAT B . D 2 HOH 49 176 174 HOH WAT B . D 2 HOH 50 177 178 HOH WAT B . D 2 HOH 51 178 182 HOH WAT B . D 2 HOH 52 179 194 HOH WAT B . D 2 HOH 53 180 207 HOH WAT B . D 2 HOH 54 181 216 HOH WAT B . D 2 HOH 55 182 217 HOH WAT B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6210 ? 1 MORE -44 ? 1 'SSA (A^2)' 17570 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 43.6300000000 0.0000000000 -1.0000000000 0.0000000000 86.0500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-14 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THIS CONSTRUCT OF TRANSTHYRETIN WAS MADE BY JOINING TWO MONOMERS VIA A GLYCINE RICH PEPTIDE TO ESSENTIALLY FORM A DIMER OF DIMERS, WHEN IN THE ACTIVE STATE. THE ACTIVE FORM OF THIS CONSTRUCT CRYSTALLIZED WITH HALF OF EACH FULL LENGTH DIMER IN THE ASYMMETRIC UNIT AND WAS ISOMORPHOUS WITH THE STRUCTURE OF 1BZD.PDB. NO ELECTRON DENSITY WAS OBSERVED FOR THE LINKER AND AS SUCH WAS REFINED AS TWO SEPERATE CHAINS (MONOMERS) IN THE ASYMMETRIC UNIT, AS FOR WILD TYPE TRANSTHYRETIN. THE SEQUENCE OF THE LINKER IS GSGGGTGGGSG. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 63 ? ? OE2 A GLU 63 ? ? 1.336 1.252 0.084 0.011 N 2 1 CD B GLU 63 ? ? OE2 B GLU 63 ? ? 1.341 1.252 0.089 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD2 A ASP 74 ? ? 124.13 118.30 5.83 0.90 N 2 1 CB B ASP 74 ? ? CG B ASP 74 ? ? OD2 B ASP 74 ? ? 124.06 118.30 5.76 0.90 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 37 ? A ALA 27 2 1 Y 1 A ASP 38 ? A ASP 28 3 1 Y 1 A GLU 61 ? A GLU 51 4 1 Y 1 A ASN 124 ? A ASN 114 5 1 Y 1 A PRO 125 ? A PRO 115 6 1 Y 1 A LYS 126 ? A LYS 116 7 1 Y 1 A GLU 127 ? A GLU 117 8 1 Y 1 B GLU 61 ? B GLU 51 9 1 Y 1 B GLU 62 ? B GLU 52 10 1 Y 1 B ASP 99 ? B ASP 89 11 1 Y 1 B SER 100 ? B SER 90 12 1 Y 1 B GLY 101 ? B GLY 91 13 1 Y 1 B PRO 102 ? B PRO 92 14 1 Y 1 B ARG 103 ? B ARG 93 15 1 Y 1 B ASN 124 ? B ASN 114 16 1 Y 1 B PRO 125 ? B PRO 115 17 1 Y 1 B LYS 126 ? B LYS 116 18 1 Y 1 B GLU 127 ? B GLU 117 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLU N N N N 74 GLU CA C N S 75 GLU C C N N 76 GLU O O N N 77 GLU CB C N N 78 GLU CG C N N 79 GLU CD C N N 80 GLU OE1 O N N 81 GLU OE2 O N N 82 GLU OXT O N N 83 GLU H H N N 84 GLU H2 H N N 85 GLU HA H N N 86 GLU HB2 H N N 87 GLU HB3 H N N 88 GLU HG2 H N N 89 GLU HG3 H N N 90 GLU HE2 H N N 91 GLU HXT H N N 92 GLY N N N N 93 GLY CA C N N 94 GLY C C N N 95 GLY O O N N 96 GLY OXT O N N 97 GLY H H N N 98 GLY H2 H N N 99 GLY HA2 H N N 100 GLY HA3 H N N 101 GLY HXT H N N 102 HIS N N N N 103 HIS CA C N S 104 HIS C C N N 105 HIS O O N N 106 HIS CB C N N 107 HIS CG C Y N 108 HIS ND1 N Y N 109 HIS CD2 C Y N 110 HIS CE1 C Y N 111 HIS NE2 N Y N 112 HIS OXT O N N 113 HIS H H N N 114 HIS H2 H N N 115 HIS HA H N N 116 HIS HB2 H N N 117 HIS HB3 H N N 118 HIS HD1 H N N 119 HIS HD2 H N N 120 HIS HE1 H N N 121 HIS HE2 H N N 122 HIS HXT H N N 123 HOH O O N N 124 HOH H1 H N N 125 HOH H2 H N N 126 ILE N N N N 127 ILE CA C N S 128 ILE C C N N 129 ILE O O N N 130 ILE CB C N S 131 ILE CG1 C N N 132 ILE CG2 C N N 133 ILE CD1 C N N 134 ILE OXT O N N 135 ILE H H N N 136 ILE H2 H N N 137 ILE HA H N N 138 ILE HB H N N 139 ILE HG12 H N N 140 ILE HG13 H N N 141 ILE HG21 H N N 142 ILE HG22 H N N 143 ILE HG23 H N N 144 ILE HD11 H N N 145 ILE HD12 H N N 146 ILE HD13 H N N 147 ILE HXT H N N 148 LEU N N N N 149 LEU CA C N S 150 LEU C C N N 151 LEU O O N N 152 LEU CB C N N 153 LEU CG C N N 154 LEU CD1 C N N 155 LEU CD2 C N N 156 LEU OXT O N N 157 LEU H H N N 158 LEU H2 H N N 159 LEU HA H N N 160 LEU HB2 H N N 161 LEU HB3 H N N 162 LEU HG H N N 163 LEU HD11 H N N 164 LEU HD12 H N N 165 LEU HD13 H N N 166 LEU HD21 H N N 167 LEU HD22 H N N 168 LEU HD23 H N N 169 LEU HXT H N N 170 LYS N N N N 171 LYS CA C N S 172 LYS C C N N 173 LYS O O N N 174 LYS CB C N N 175 LYS CG C N N 176 LYS CD C N N 177 LYS CE C N N 178 LYS NZ N N N 179 LYS OXT O N N 180 LYS H H N N 181 LYS H2 H N N 182 LYS HA H N N 183 LYS HB2 H N N 184 LYS HB3 H N N 185 LYS HG2 H N N 186 LYS HG3 H N N 187 LYS HD2 H N N 188 LYS HD3 H N N 189 LYS HE2 H N N 190 LYS HE3 H N N 191 LYS HZ1 H N N 192 LYS HZ2 H N N 193 LYS HZ3 H N N 194 LYS HXT H N N 195 MET N N N N 196 MET CA C N S 197 MET C C N N 198 MET O O N N 199 MET CB C N N 200 MET CG C N N 201 MET SD S N N 202 MET CE C N N 203 MET OXT O N N 204 MET H H N N 205 MET H2 H N N 206 MET HA H N N 207 MET HB2 H N N 208 MET HB3 H N N 209 MET HG2 H N N 210 MET HG3 H N N 211 MET HE1 H N N 212 MET HE2 H N N 213 MET HE3 H N N 214 MET HXT H N N 215 PHE N N N N 216 PHE CA C N S 217 PHE C C N N 218 PHE O O N N 219 PHE CB C N N 220 PHE CG C Y N 221 PHE CD1 C Y N 222 PHE CD2 C Y N 223 PHE CE1 C Y N 224 PHE CE2 C Y N 225 PHE CZ C Y N 226 PHE OXT O N N 227 PHE H H N N 228 PHE H2 H N N 229 PHE HA H N N 230 PHE HB2 H N N 231 PHE HB3 H N N 232 PHE HD1 H N N 233 PHE HD2 H N N 234 PHE HE1 H N N 235 PHE HE2 H N N 236 PHE HZ H N N 237 PHE HXT H N N 238 PRO N N N N 239 PRO CA C N S 240 PRO C C N N 241 PRO O O N N 242 PRO CB C N N 243 PRO CG C N N 244 PRO CD C N N 245 PRO OXT O N N 246 PRO H H N N 247 PRO HA H N N 248 PRO HB2 H N N 249 PRO HB3 H N N 250 PRO HG2 H N N 251 PRO HG3 H N N 252 PRO HD2 H N N 253 PRO HD3 H N N 254 PRO HXT H N N 255 SER N N N N 256 SER CA C N S 257 SER C C N N 258 SER O O N N 259 SER CB C N N 260 SER OG O N N 261 SER OXT O N N 262 SER H H N N 263 SER H2 H N N 264 SER HA H N N 265 SER HB2 H N N 266 SER HB3 H N N 267 SER HG H N N 268 SER HXT H N N 269 THR N N N N 270 THR CA C N S 271 THR C C N N 272 THR O O N N 273 THR CB C N R 274 THR OG1 O N N 275 THR CG2 C N N 276 THR OXT O N N 277 THR H H N N 278 THR H2 H N N 279 THR HA H N N 280 THR HB H N N 281 THR HG1 H N N 282 THR HG21 H N N 283 THR HG22 H N N 284 THR HG23 H N N 285 THR HXT H N N 286 TRP N N N N 287 TRP CA C N S 288 TRP C C N N 289 TRP O O N N 290 TRP CB C N N 291 TRP CG C Y N 292 TRP CD1 C Y N 293 TRP CD2 C Y N 294 TRP NE1 N Y N 295 TRP CE2 C Y N 296 TRP CE3 C Y N 297 TRP CZ2 C Y N 298 TRP CZ3 C Y N 299 TRP CH2 C Y N 300 TRP OXT O N N 301 TRP H H N N 302 TRP H2 H N N 303 TRP HA H N N 304 TRP HB2 H N N 305 TRP HB3 H N N 306 TRP HD1 H N N 307 TRP HE1 H N N 308 TRP HE3 H N N 309 TRP HZ2 H N N 310 TRP HZ3 H N N 311 TRP HH2 H N N 312 TRP HXT H N N 313 TYR N N N N 314 TYR CA C N S 315 TYR C C N N 316 TYR O O N N 317 TYR CB C N N 318 TYR CG C Y N 319 TYR CD1 C Y N 320 TYR CD2 C Y N 321 TYR CE1 C Y N 322 TYR CE2 C Y N 323 TYR CZ C Y N 324 TYR OH O N N 325 TYR OXT O N N 326 TYR H H N N 327 TYR H2 H N N 328 TYR HA H N N 329 TYR HB2 H N N 330 TYR HB3 H N N 331 TYR HD1 H N N 332 TYR HD2 H N N 333 TYR HE1 H N N 334 TYR HE2 H N N 335 TYR HH H N N 336 TYR HXT H N N 337 VAL N N N N 338 VAL CA C N S 339 VAL C C N N 340 VAL O O N N 341 VAL CB C N N 342 VAL CG1 C N N 343 VAL CG2 C N N 344 VAL OXT O N N 345 VAL H H N N 346 VAL H2 H N N 347 VAL HA H N N 348 VAL HB H N N 349 VAL HG11 H N N 350 VAL HG12 H N N 351 VAL HG13 H N N 352 VAL HG21 H N N 353 VAL HG22 H N N 354 VAL HG23 H N N 355 VAL HXT H N N 356 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLU N CA sing N N 70 GLU N H sing N N 71 GLU N H2 sing N N 72 GLU CA C sing N N 73 GLU CA CB sing N N 74 GLU CA HA sing N N 75 GLU C O doub N N 76 GLU C OXT sing N N 77 GLU CB CG sing N N 78 GLU CB HB2 sing N N 79 GLU CB HB3 sing N N 80 GLU CG CD sing N N 81 GLU CG HG2 sing N N 82 GLU CG HG3 sing N N 83 GLU CD OE1 doub N N 84 GLU CD OE2 sing N N 85 GLU OE2 HE2 sing N N 86 GLU OXT HXT sing N N 87 GLY N CA sing N N 88 GLY N H sing N N 89 GLY N H2 sing N N 90 GLY CA C sing N N 91 GLY CA HA2 sing N N 92 GLY CA HA3 sing N N 93 GLY C O doub N N 94 GLY C OXT sing N N 95 GLY OXT HXT sing N N 96 HIS N CA sing N N 97 HIS N H sing N N 98 HIS N H2 sing N N 99 HIS CA C sing N N 100 HIS CA CB sing N N 101 HIS CA HA sing N N 102 HIS C O doub N N 103 HIS C OXT sing N N 104 HIS CB CG sing N N 105 HIS CB HB2 sing N N 106 HIS CB HB3 sing N N 107 HIS CG ND1 sing Y N 108 HIS CG CD2 doub Y N 109 HIS ND1 CE1 doub Y N 110 HIS ND1 HD1 sing N N 111 HIS CD2 NE2 sing Y N 112 HIS CD2 HD2 sing N N 113 HIS CE1 NE2 sing Y N 114 HIS CE1 HE1 sing N N 115 HIS NE2 HE2 sing N N 116 HIS OXT HXT sing N N 117 HOH O H1 sing N N 118 HOH O H2 sing N N 119 ILE N CA sing N N 120 ILE N H sing N N 121 ILE N H2 sing N N 122 ILE CA C sing N N 123 ILE CA CB sing N N 124 ILE CA HA sing N N 125 ILE C O doub N N 126 ILE C OXT sing N N 127 ILE CB CG1 sing N N 128 ILE CB CG2 sing N N 129 ILE CB HB sing N N 130 ILE CG1 CD1 sing N N 131 ILE CG1 HG12 sing N N 132 ILE CG1 HG13 sing N N 133 ILE CG2 HG21 sing N N 134 ILE CG2 HG22 sing N N 135 ILE CG2 HG23 sing N N 136 ILE CD1 HD11 sing N N 137 ILE CD1 HD12 sing N N 138 ILE CD1 HD13 sing N N 139 ILE OXT HXT sing N N 140 LEU N CA sing N N 141 LEU N H sing N N 142 LEU N H2 sing N N 143 LEU CA C sing N N 144 LEU CA CB sing N N 145 LEU CA HA sing N N 146 LEU C O doub N N 147 LEU C OXT sing N N 148 LEU CB CG sing N N 149 LEU CB HB2 sing N N 150 LEU CB HB3 sing N N 151 LEU CG CD1 sing N N 152 LEU CG CD2 sing N N 153 LEU CG HG sing N N 154 LEU CD1 HD11 sing N N 155 LEU CD1 HD12 sing N N 156 LEU CD1 HD13 sing N N 157 LEU CD2 HD21 sing N N 158 LEU CD2 HD22 sing N N 159 LEU CD2 HD23 sing N N 160 LEU OXT HXT sing N N 161 LYS N CA sing N N 162 LYS N H sing N N 163 LYS N H2 sing N N 164 LYS CA C sing N N 165 LYS CA CB sing N N 166 LYS CA HA sing N N 167 LYS C O doub N N 168 LYS C OXT sing N N 169 LYS CB CG sing N N 170 LYS CB HB2 sing N N 171 LYS CB HB3 sing N N 172 LYS CG CD sing N N 173 LYS CG HG2 sing N N 174 LYS CG HG3 sing N N 175 LYS CD CE sing N N 176 LYS CD HD2 sing N N 177 LYS CD HD3 sing N N 178 LYS CE NZ sing N N 179 LYS CE HE2 sing N N 180 LYS CE HE3 sing N N 181 LYS NZ HZ1 sing N N 182 LYS NZ HZ2 sing N N 183 LYS NZ HZ3 sing N N 184 LYS OXT HXT sing N N 185 MET N CA sing N N 186 MET N H sing N N 187 MET N H2 sing N N 188 MET CA C sing N N 189 MET CA CB sing N N 190 MET CA HA sing N N 191 MET C O doub N N 192 MET C OXT sing N N 193 MET CB CG sing N N 194 MET CB HB2 sing N N 195 MET CB HB3 sing N N 196 MET CG SD sing N N 197 MET CG HG2 sing N N 198 MET CG HG3 sing N N 199 MET SD CE sing N N 200 MET CE HE1 sing N N 201 MET CE HE2 sing N N 202 MET CE HE3 sing N N 203 MET OXT HXT sing N N 204 PHE N CA sing N N 205 PHE N H sing N N 206 PHE N H2 sing N N 207 PHE CA C sing N N 208 PHE CA CB sing N N 209 PHE CA HA sing N N 210 PHE C O doub N N 211 PHE C OXT sing N N 212 PHE CB CG sing N N 213 PHE CB HB2 sing N N 214 PHE CB HB3 sing N N 215 PHE CG CD1 doub Y N 216 PHE CG CD2 sing Y N 217 PHE CD1 CE1 sing Y N 218 PHE CD1 HD1 sing N N 219 PHE CD2 CE2 doub Y N 220 PHE CD2 HD2 sing N N 221 PHE CE1 CZ doub Y N 222 PHE CE1 HE1 sing N N 223 PHE CE2 CZ sing Y N 224 PHE CE2 HE2 sing N N 225 PHE CZ HZ sing N N 226 PHE OXT HXT sing N N 227 PRO N CA sing N N 228 PRO N CD sing N N 229 PRO N H sing N N 230 PRO CA C sing N N 231 PRO CA CB sing N N 232 PRO CA HA sing N N 233 PRO C O doub N N 234 PRO C OXT sing N N 235 PRO CB CG sing N N 236 PRO CB HB2 sing N N 237 PRO CB HB3 sing N N 238 PRO CG CD sing N N 239 PRO CG HG2 sing N N 240 PRO CG HG3 sing N N 241 PRO CD HD2 sing N N 242 PRO CD HD3 sing N N 243 PRO OXT HXT sing N N 244 SER N CA sing N N 245 SER N H sing N N 246 SER N H2 sing N N 247 SER CA C sing N N 248 SER CA CB sing N N 249 SER CA HA sing N N 250 SER C O doub N N 251 SER C OXT sing N N 252 SER CB OG sing N N 253 SER CB HB2 sing N N 254 SER CB HB3 sing N N 255 SER OG HG sing N N 256 SER OXT HXT sing N N 257 THR N CA sing N N 258 THR N H sing N N 259 THR N H2 sing N N 260 THR CA C sing N N 261 THR CA CB sing N N 262 THR CA HA sing N N 263 THR C O doub N N 264 THR C OXT sing N N 265 THR CB OG1 sing N N 266 THR CB CG2 sing N N 267 THR CB HB sing N N 268 THR OG1 HG1 sing N N 269 THR CG2 HG21 sing N N 270 THR CG2 HG22 sing N N 271 THR CG2 HG23 sing N N 272 THR OXT HXT sing N N 273 TRP N CA sing N N 274 TRP N H sing N N 275 TRP N H2 sing N N 276 TRP CA C sing N N 277 TRP CA CB sing N N 278 TRP CA HA sing N N 279 TRP C O doub N N 280 TRP C OXT sing N N 281 TRP CB CG sing N N 282 TRP CB HB2 sing N N 283 TRP CB HB3 sing N N 284 TRP CG CD1 doub Y N 285 TRP CG CD2 sing Y N 286 TRP CD1 NE1 sing Y N 287 TRP CD1 HD1 sing N N 288 TRP CD2 CE2 doub Y N 289 TRP CD2 CE3 sing Y N 290 TRP NE1 CE2 sing Y N 291 TRP NE1 HE1 sing N N 292 TRP CE2 CZ2 sing Y N 293 TRP CE3 CZ3 doub Y N 294 TRP CE3 HE3 sing N N 295 TRP CZ2 CH2 doub Y N 296 TRP CZ2 HZ2 sing N N 297 TRP CZ3 CH2 sing Y N 298 TRP CZ3 HZ3 sing N N 299 TRP CH2 HH2 sing N N 300 TRP OXT HXT sing N N 301 TYR N CA sing N N 302 TYR N H sing N N 303 TYR N H2 sing N N 304 TYR CA C sing N N 305 TYR CA CB sing N N 306 TYR CA HA sing N N 307 TYR C O doub N N 308 TYR C OXT sing N N 309 TYR CB CG sing N N 310 TYR CB HB2 sing N N 311 TYR CB HB3 sing N N 312 TYR CG CD1 doub Y N 313 TYR CG CD2 sing Y N 314 TYR CD1 CE1 sing Y N 315 TYR CD1 HD1 sing N N 316 TYR CD2 CE2 doub Y N 317 TYR CD2 HD2 sing N N 318 TYR CE1 CZ doub Y N 319 TYR CE1 HE1 sing N N 320 TYR CE2 CZ sing Y N 321 TYR CE2 HE2 sing N N 322 TYR CZ OH sing N N 323 TYR OH HH sing N N 324 TYR OXT HXT sing N N 325 VAL N CA sing N N 326 VAL N H sing N N 327 VAL N H2 sing N N 328 VAL CA C sing N N 329 VAL CA CB sing N N 330 VAL CA HA sing N N 331 VAL C O doub N N 332 VAL C OXT sing N N 333 VAL CB CG1 sing N N 334 VAL CB CG2 sing N N 335 VAL CB HB sing N N 336 VAL CG1 HG11 sing N N 337 VAL CG1 HG12 sing N N 338 VAL CG1 HG13 sing N N 339 VAL CG2 HG21 sing N N 340 VAL CG2 HG22 sing N N 341 VAL CG2 HG23 sing N N 342 VAL OXT HXT sing N N 343 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DVQ _pdbx_initial_refinement_model.details 'PDB ENTRY 1DVQ.pdb' #