data_1QXA # _entry.id 1QXA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1QXA RCSB RCSB020180 WWPDB D_1000020180 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1QWZ 'Same protein complexed with MTSET' unspecified PDB 1QX6 'Same protein complexed with E-64' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QXA _pdbx_database_status.recvd_initial_deposition_date 2003-09-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zong, Y.' 1 'Mazmanian, S.K.' 2 'Schneewind, O.' 3 'Narayana, S.V.' 4 # _citation.id primary _citation.title 'The structure of sortase B, a cysteine transpeptidase that tethers surface protein to the Staphylococcus aureus cell wall' _citation.journal_abbrev Structure _citation.journal_volume 12 _citation.page_first 105 _citation.page_last 112 _citation.year 2004 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14725770 _citation.pdbx_database_id_DOI 10.1016/j.str.2003.11.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zong, Y.' 1 primary 'Mazmanian, S.K.' 2 primary 'Schneewind, O.' 3 primary 'Narayana, S.V.' 4 # _cell.entry_id 1QXA _cell.length_a 57.690 _cell.length_b 67.230 _cell.length_c 102.580 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QXA _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NPQTN specific sortase B' 27920.346 1 ? ? ? ? 2 polymer syn 'peptide GLY-GLY-GLY' 189.171 1 ? ? ? ? 3 non-polymer syn '2-(TRIMETHYLAMMONIUM)ETHYL THIOL' 120.236 1 ? ? ? ? 4 water nat water 18.015 26 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GHHHHHHHHHHSSGHISGDAMEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQG KTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQV FSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS ; ;GHHHHHHHHHHSSGHISGDAMEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQG KTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQV FSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS ; A ? 2 'polypeptide(L)' no no GGG GGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 SER n 1 13 SER n 1 14 GLY n 1 15 HIS n 1 16 ILE n 1 17 SER n 1 18 GLY n 1 19 ASP n 1 20 ALA n 1 21 MET n 1 22 GLU n 1 23 ASP n 1 24 LYS n 1 25 GLN n 1 26 GLU n 1 27 ARG n 1 28 ALA n 1 29 ASN n 1 30 TYR n 1 31 GLU n 1 32 LYS n 1 33 LEU n 1 34 GLN n 1 35 GLN n 1 36 LYS n 1 37 PHE n 1 38 GLN n 1 39 MET n 1 40 LEU n 1 41 MET n 1 42 SER n 1 43 LYS n 1 44 HIS n 1 45 GLN n 1 46 ALA n 1 47 HIS n 1 48 VAL n 1 49 ARG n 1 50 PRO n 1 51 GLN n 1 52 PHE n 1 53 GLU n 1 54 SER n 1 55 LEU n 1 56 GLU n 1 57 LYS n 1 58 ILE n 1 59 ASN n 1 60 LYS n 1 61 ASP n 1 62 ILE n 1 63 VAL n 1 64 GLY n 1 65 TRP n 1 66 ILE n 1 67 LYS n 1 68 LEU n 1 69 SER n 1 70 GLY n 1 71 THR n 1 72 SER n 1 73 LEU n 1 74 ASN n 1 75 TYR n 1 76 PRO n 1 77 VAL n 1 78 LEU n 1 79 GLN n 1 80 GLY n 1 81 LYS n 1 82 THR n 1 83 ASN n 1 84 HIS n 1 85 ASP n 1 86 TYR n 1 87 LEU n 1 88 ASN n 1 89 LEU n 1 90 ASP n 1 91 PHE n 1 92 GLU n 1 93 ARG n 1 94 GLU n 1 95 HIS n 1 96 ARG n 1 97 ARG n 1 98 LYS n 1 99 GLY n 1 100 SER n 1 101 ILE n 1 102 PHE n 1 103 MET n 1 104 ASP n 1 105 PHE n 1 106 ARG n 1 107 ASN n 1 108 GLU n 1 109 LEU n 1 110 LYS n 1 111 ASN n 1 112 LEU n 1 113 ASN n 1 114 HIS n 1 115 ASN n 1 116 THR n 1 117 ILE n 1 118 LEU n 1 119 TYR n 1 120 GLY n 1 121 HIS n 1 122 HIS n 1 123 VAL n 1 124 GLY n 1 125 ASP n 1 126 ASN n 1 127 THR n 1 128 MET n 1 129 PHE n 1 130 ASP n 1 131 VAL n 1 132 LEU n 1 133 GLU n 1 134 ASP n 1 135 TYR n 1 136 LEU n 1 137 LYS n 1 138 GLN n 1 139 SER n 1 140 PHE n 1 141 TYR n 1 142 GLU n 1 143 LYS n 1 144 HIS n 1 145 LYS n 1 146 ILE n 1 147 ILE n 1 148 GLU n 1 149 PHE n 1 150 ASP n 1 151 ASN n 1 152 LYS n 1 153 TYR n 1 154 GLY n 1 155 LYS n 1 156 TYR n 1 157 GLN n 1 158 LEU n 1 159 GLN n 1 160 VAL n 1 161 PHE n 1 162 SER n 1 163 ALA n 1 164 TYR n 1 165 LYS n 1 166 THR n 1 167 THR n 1 168 THR n 1 169 LYS n 1 170 ASP n 1 171 ASN n 1 172 TYR n 1 173 ILE n 1 174 ARG n 1 175 THR n 1 176 ASP n 1 177 PHE n 1 178 GLU n 1 179 ASN n 1 180 ASP n 1 181 GLN n 1 182 ASP n 1 183 TYR n 1 184 GLN n 1 185 GLN n 1 186 PHE n 1 187 LEU n 1 188 ASP n 1 189 GLU n 1 190 THR n 1 191 LYS n 1 192 ARG n 1 193 LYS n 1 194 SER n 1 195 VAL n 1 196 ILE n 1 197 ASN n 1 198 SER n 1 199 ASP n 1 200 VAL n 1 201 ASN n 1 202 VAL n 1 203 THR n 1 204 VAL n 1 205 LYS n 1 206 ASP n 1 207 ARG n 1 208 ILE n 1 209 MET n 1 210 THR n 1 211 LEU n 1 212 SER n 1 213 THR n 1 214 CYS n 1 215 GLU n 1 216 ASP n 1 217 ALA n 1 218 TYR n 1 219 SER n 1 220 GLU n 1 221 THR n 1 222 THR n 1 223 LYS n 1 224 ARG n 1 225 ILE n 1 226 VAL n 1 227 VAL n 1 228 VAL n 1 229 ALA n 1 230 LYS n 1 231 ILE n 1 232 ILE n 1 233 LYS n 1 234 VAL n 1 235 SER n 2 1 GLY n 2 2 GLY n 2 3 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q8NX63_STAAW Q8NX63 1 ;EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSI FMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQ DYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS ; 31 ? 2 PDB 1QXA 1QXA 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QXA A 22 ? 235 ? Q8NX63 31 ? 244 ? 31 244 2 2 1QXA B 1 ? 3 ? 1QXA 245 ? 247 ? 245 247 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1QXA GLY A 1 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 10 1 1 1QXA HIS A 2 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 11 2 1 1QXA HIS A 3 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 12 3 1 1QXA HIS A 4 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 13 4 1 1QXA HIS A 5 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 14 5 1 1QXA HIS A 6 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 15 6 1 1QXA HIS A 7 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 16 7 1 1QXA HIS A 8 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 17 8 1 1QXA HIS A 9 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 18 9 1 1QXA HIS A 10 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 19 10 1 1QXA HIS A 11 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 20 11 1 1QXA SER A 12 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 21 12 1 1QXA SER A 13 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 22 13 1 1QXA GLY A 14 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 23 14 1 1QXA HIS A 15 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 24 15 1 1QXA ILE A 16 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 25 16 1 1QXA SER A 17 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 26 17 1 1QXA GLY A 18 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 27 18 1 1QXA ASP A 19 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 28 19 1 1QXA ALA A 20 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 29 20 1 1QXA MET A 21 ? UNP Q8NX63 ? ? 'EXPRESSION TAG' 30 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 ETM non-polymer . '2-(TRIMETHYLAMMONIUM)ETHYL THIOL' ? 'C5 H14 N S 1' 120.236 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1QXA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details 'Ammonium Sulfate, Sodium Chloride, MES, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-11-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1QXA _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.5 _reflns.number_obs 6905 _reflns.number_all 7109 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 26.6 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.6 _reflns_shell.percent_possible_all 96 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QXA _refine.ls_number_reflns_obs 6688 _refine.ls_number_reflns_all 6905 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 237868.26 _refine.pdbx_data_cutoff_low_absF 0 _refine.pdbx_data_cutoff_high_rms_absF 237868.26 _refine.ls_d_res_low 33.30 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 93.7 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all 0.235 _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.235 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.9 _refine.ls_number_reflns_R_free 732 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.9 _refine.aniso_B[1][1] -0.63 _refine.aniso_B[2][2] 6.06 _refine.aniso_B[3][3] -5.43 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.395327 _refine.solvent_model_param_bsol 43.2203 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1QXA _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1810 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 1843 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 33.30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.91 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.34 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.58 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.14 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 876 _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.percent_reflns_obs 83.8 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free 11.3 _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM MTS.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ? 'X-RAY DIFFRACTION' 4 MTS.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1QXA _struct.title 'Crystal structure of Sortase B complexed with Gly3' _struct.pdbx_descriptor 'NPQTN specific sortase B/peptide GLY-GLY-GLY' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QXA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Sortase, transpeptidase, cysteine protease, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 22 ? HIS A 44 ? GLU A 31 HIS A 53 1 ? 23 HELX_P HELX_P2 2 VAL A 48 ? ASN A 59 ? VAL A 57 ASN A 68 1 ? 12 HELX_P HELX_P3 3 PHE A 129 ? LEU A 136 ? PHE A 138 LEU A 145 5 ? 8 HELX_P HELX_P4 4 LYS A 137 ? HIS A 144 ? LYS A 146 HIS A 153 1 ? 8 HELX_P HELX_P5 5 ASP A 170 ? ARG A 174 ? ASP A 179 ARG A 183 5 ? 5 HELX_P HELX_P6 6 ASN A 179 ? SER A 194 ? ASN A 188 SER A 203 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 214 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id ETM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id SD _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 223 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ETM _struct_conn.ptnr2_auth_seq_id 248 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.180 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 62 ? LYS A 67 ? ILE A 71 LYS A 76 A 2 ILE A 101 ? MET A 103 ? ILE A 110 MET A 112 A 3 ASN A 115 ? GLY A 120 ? ASN A 124 GLY A 129 A 4 ARG A 207 ? THR A 213 ? ARG A 216 THR A 222 A 5 ARG A 224 ? LYS A 233 ? ARG A 233 LYS A 242 A 6 GLY A 154 ? THR A 166 ? GLY A 163 THR A 175 A 7 ILE A 146 ? ASN A 151 ? ILE A 155 ASN A 160 A 8 ILE A 62 ? LYS A 67 ? ILE A 71 LYS A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 2 3 N PHE A 102 ? N PHE A 111 O TYR A 119 ? O TYR A 128 A 3 4 N THR A 116 ? N THR A 125 O THR A 210 ? O THR A 219 A 4 5 N ARG A 207 ? N ARG A 216 O ILE A 231 ? O ILE A 240 A 5 6 O VAL A 228 ? O VAL A 237 N SER A 162 ? N SER A 171 A 6 7 O LEU A 158 ? O LEU A 167 N ILE A 147 ? N ILE A 156 A 7 8 O GLU A 148 ? O GLU A 157 N LYS A 67 ? N LYS A 76 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ETM A 248' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 83 ? ASN A 92 . ? 1_555 ? 2 AC1 4 CYS A 214 ? CYS A 223 . ? 1_555 ? 3 AC1 4 HOH D . ? HOH A 254 . ? 1_555 ? 4 AC1 4 GLY B 1 ? GLY B 245 . ? 1_555 ? # _database_PDB_matrix.entry_id 1QXA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QXA _atom_sites.fract_transf_matrix[1][1] 0.017334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014874 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009748 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 10 ? ? ? A . n A 1 2 HIS 2 11 ? ? ? A . n A 1 3 HIS 3 12 ? ? ? A . n A 1 4 HIS 4 13 ? ? ? A . n A 1 5 HIS 5 14 ? ? ? A . n A 1 6 HIS 6 15 ? ? ? A . n A 1 7 HIS 7 16 ? ? ? A . n A 1 8 HIS 8 17 ? ? ? A . n A 1 9 HIS 9 18 ? ? ? A . n A 1 10 HIS 10 19 ? ? ? A . n A 1 11 HIS 11 20 ? ? ? A . n A 1 12 SER 12 21 ? ? ? A . n A 1 13 SER 13 22 ? ? ? A . n A 1 14 GLY 14 23 ? ? ? A . n A 1 15 HIS 15 24 ? ? ? A . n A 1 16 ILE 16 25 ? ? ? A . n A 1 17 SER 17 26 ? ? ? A . n A 1 18 GLY 18 27 ? ? ? A . n A 1 19 ASP 19 28 ? ? ? A . n A 1 20 ALA 20 29 ? ? ? A . n A 1 21 MET 21 30 ? ? ? A . n A 1 22 GLU 22 31 31 GLU GLU A . n A 1 23 ASP 23 32 32 ASP ASP A . n A 1 24 LYS 24 33 33 LYS LYS A . n A 1 25 GLN 25 34 34 GLN GLN A . n A 1 26 GLU 26 35 35 GLU GLU A . n A 1 27 ARG 27 36 36 ARG ARG A . n A 1 28 ALA 28 37 37 ALA ALA A . n A 1 29 ASN 29 38 38 ASN ASN A . n A 1 30 TYR 30 39 39 TYR TYR A . n A 1 31 GLU 31 40 40 GLU GLU A . n A 1 32 LYS 32 41 41 LYS LYS A . n A 1 33 LEU 33 42 42 LEU LEU A . n A 1 34 GLN 34 43 43 GLN GLN A . n A 1 35 GLN 35 44 44 GLN GLN A . n A 1 36 LYS 36 45 45 LYS LYS A . n A 1 37 PHE 37 46 46 PHE PHE A . n A 1 38 GLN 38 47 47 GLN GLN A . n A 1 39 MET 39 48 48 MET MET A . n A 1 40 LEU 40 49 49 LEU LEU A . n A 1 41 MET 41 50 50 MET MET A . n A 1 42 SER 42 51 51 SER SER A . n A 1 43 LYS 43 52 52 LYS LYS A . n A 1 44 HIS 44 53 53 HIS HIS A . n A 1 45 GLN 45 54 54 GLN GLN A . n A 1 46 ALA 46 55 55 ALA ALA A . n A 1 47 HIS 47 56 56 HIS HIS A . n A 1 48 VAL 48 57 57 VAL VAL A . n A 1 49 ARG 49 58 58 ARG ARG A . n A 1 50 PRO 50 59 59 PRO PRO A . n A 1 51 GLN 51 60 60 GLN GLN A . n A 1 52 PHE 52 61 61 PHE PHE A . n A 1 53 GLU 53 62 62 GLU GLU A . n A 1 54 SER 54 63 63 SER SER A . n A 1 55 LEU 55 64 64 LEU LEU A . n A 1 56 GLU 56 65 65 GLU GLU A . n A 1 57 LYS 57 66 66 LYS LYS A . n A 1 58 ILE 58 67 67 ILE ILE A . n A 1 59 ASN 59 68 68 ASN ASN A . n A 1 60 LYS 60 69 69 LYS LYS A . n A 1 61 ASP 61 70 70 ASP ASP A . n A 1 62 ILE 62 71 71 ILE ILE A . n A 1 63 VAL 63 72 72 VAL VAL A . n A 1 64 GLY 64 73 73 GLY GLY A . n A 1 65 TRP 65 74 74 TRP TRP A . n A 1 66 ILE 66 75 75 ILE ILE A . n A 1 67 LYS 67 76 76 LYS LYS A . n A 1 68 LEU 68 77 77 LEU LEU A . n A 1 69 SER 69 78 78 SER SER A . n A 1 70 GLY 70 79 79 GLY GLY A . n A 1 71 THR 71 80 80 THR THR A . n A 1 72 SER 72 81 81 SER SER A . n A 1 73 LEU 73 82 82 LEU LEU A . n A 1 74 ASN 74 83 83 ASN ASN A . n A 1 75 TYR 75 84 84 TYR TYR A . n A 1 76 PRO 76 85 85 PRO PRO A . n A 1 77 VAL 77 86 86 VAL VAL A . n A 1 78 LEU 78 87 87 LEU LEU A . n A 1 79 GLN 79 88 88 GLN GLN A . n A 1 80 GLY 80 89 89 GLY GLY A . n A 1 81 LYS 81 90 90 LYS LYS A . n A 1 82 THR 82 91 91 THR THR A . n A 1 83 ASN 83 92 92 ASN ASN A . n A 1 84 HIS 84 93 93 HIS HIS A . n A 1 85 ASP 85 94 94 ASP ASP A . n A 1 86 TYR 86 95 95 TYR TYR A . n A 1 87 LEU 87 96 96 LEU LEU A . n A 1 88 ASN 88 97 97 ASN ASN A . n A 1 89 LEU 89 98 98 LEU LEU A . n A 1 90 ASP 90 99 99 ASP ASP A . n A 1 91 PHE 91 100 100 PHE PHE A . n A 1 92 GLU 92 101 101 GLU GLU A . n A 1 93 ARG 93 102 102 ARG ARG A . n A 1 94 GLU 94 103 103 GLU GLU A . n A 1 95 HIS 95 104 104 HIS HIS A . n A 1 96 ARG 96 105 105 ARG ARG A . n A 1 97 ARG 97 106 106 ARG ARG A . n A 1 98 LYS 98 107 107 LYS LYS A . n A 1 99 GLY 99 108 108 GLY GLY A . n A 1 100 SER 100 109 109 SER SER A . n A 1 101 ILE 101 110 110 ILE ILE A . n A 1 102 PHE 102 111 111 PHE PHE A . n A 1 103 MET 103 112 112 MET MET A . n A 1 104 ASP 104 113 113 ASP ASP A . n A 1 105 PHE 105 114 114 PHE PHE A . n A 1 106 ARG 106 115 115 ARG ARG A . n A 1 107 ASN 107 116 116 ASN ASN A . n A 1 108 GLU 108 117 117 GLU GLU A . n A 1 109 LEU 109 118 118 LEU LEU A . n A 1 110 LYS 110 119 119 LYS LYS A . n A 1 111 ASN 111 120 120 ASN ASN A . n A 1 112 LEU 112 121 121 LEU LEU A . n A 1 113 ASN 113 122 122 ASN ASN A . n A 1 114 HIS 114 123 123 HIS HIS A . n A 1 115 ASN 115 124 124 ASN ASN A . n A 1 116 THR 116 125 125 THR THR A . n A 1 117 ILE 117 126 126 ILE ILE A . n A 1 118 LEU 118 127 127 LEU LEU A . n A 1 119 TYR 119 128 128 TYR TYR A . n A 1 120 GLY 120 129 129 GLY GLY A . n A 1 121 HIS 121 130 130 HIS HIS A . n A 1 122 HIS 122 131 131 HIS HIS A . n A 1 123 VAL 123 132 132 VAL VAL A . n A 1 124 GLY 124 133 133 GLY GLY A . n A 1 125 ASP 125 134 134 ASP ASP A . n A 1 126 ASN 126 135 135 ASN ASN A . n A 1 127 THR 127 136 136 THR THR A . n A 1 128 MET 128 137 137 MET MET A . n A 1 129 PHE 129 138 138 PHE PHE A . n A 1 130 ASP 130 139 139 ASP ASP A . n A 1 131 VAL 131 140 140 VAL VAL A . n A 1 132 LEU 132 141 141 LEU LEU A . n A 1 133 GLU 133 142 142 GLU GLU A . n A 1 134 ASP 134 143 143 ASP ASP A . n A 1 135 TYR 135 144 144 TYR TYR A . n A 1 136 LEU 136 145 145 LEU LEU A . n A 1 137 LYS 137 146 146 LYS LYS A . n A 1 138 GLN 138 147 147 GLN GLN A . n A 1 139 SER 139 148 148 SER SER A . n A 1 140 PHE 140 149 149 PHE PHE A . n A 1 141 TYR 141 150 150 TYR TYR A . n A 1 142 GLU 142 151 151 GLU GLU A . n A 1 143 LYS 143 152 152 LYS LYS A . n A 1 144 HIS 144 153 153 HIS HIS A . n A 1 145 LYS 145 154 154 LYS LYS A . n A 1 146 ILE 146 155 155 ILE ILE A . n A 1 147 ILE 147 156 156 ILE ILE A . n A 1 148 GLU 148 157 157 GLU GLU A . n A 1 149 PHE 149 158 158 PHE PHE A . n A 1 150 ASP 150 159 159 ASP ASP A . n A 1 151 ASN 151 160 160 ASN ASN A . n A 1 152 LYS 152 161 161 LYS LYS A . n A 1 153 TYR 153 162 162 TYR TYR A . n A 1 154 GLY 154 163 163 GLY GLY A . n A 1 155 LYS 155 164 164 LYS LYS A . n A 1 156 TYR 156 165 165 TYR TYR A . n A 1 157 GLN 157 166 166 GLN GLN A . n A 1 158 LEU 158 167 167 LEU LEU A . n A 1 159 GLN 159 168 168 GLN GLN A . n A 1 160 VAL 160 169 169 VAL VAL A . n A 1 161 PHE 161 170 170 PHE PHE A . n A 1 162 SER 162 171 171 SER SER A . n A 1 163 ALA 163 172 172 ALA ALA A . n A 1 164 TYR 164 173 173 TYR TYR A . n A 1 165 LYS 165 174 174 LYS LYS A . n A 1 166 THR 166 175 175 THR THR A . n A 1 167 THR 167 176 176 THR THR A . n A 1 168 THR 168 177 177 THR THR A . n A 1 169 LYS 169 178 178 LYS LYS A . n A 1 170 ASP 170 179 179 ASP ASP A . n A 1 171 ASN 171 180 180 ASN ASN A . n A 1 172 TYR 172 181 181 TYR TYR A . n A 1 173 ILE 173 182 182 ILE ILE A . n A 1 174 ARG 174 183 183 ARG ARG A . n A 1 175 THR 175 184 184 THR THR A . n A 1 176 ASP 176 185 185 ASP ASP A . n A 1 177 PHE 177 186 186 PHE PHE A . n A 1 178 GLU 178 187 187 GLU GLU A . n A 1 179 ASN 179 188 188 ASN ASN A . n A 1 180 ASP 180 189 189 ASP ASP A . n A 1 181 GLN 181 190 190 GLN GLN A . n A 1 182 ASP 182 191 191 ASP ASP A . n A 1 183 TYR 183 192 192 TYR TYR A . n A 1 184 GLN 184 193 193 GLN GLN A . n A 1 185 GLN 185 194 194 GLN GLN A . n A 1 186 PHE 186 195 195 PHE PHE A . n A 1 187 LEU 187 196 196 LEU LEU A . n A 1 188 ASP 188 197 197 ASP ASP A . n A 1 189 GLU 189 198 198 GLU GLU A . n A 1 190 THR 190 199 199 THR THR A . n A 1 191 LYS 191 200 200 LYS LYS A . n A 1 192 ARG 192 201 201 ARG ARG A . n A 1 193 LYS 193 202 202 LYS LYS A . n A 1 194 SER 194 203 203 SER SER A . n A 1 195 VAL 195 204 204 VAL VAL A . n A 1 196 ILE 196 205 205 ILE ILE A . n A 1 197 ASN 197 206 206 ASN ASN A . n A 1 198 SER 198 207 207 SER SER A . n A 1 199 ASP 199 208 208 ASP ASP A . n A 1 200 VAL 200 209 209 VAL VAL A . n A 1 201 ASN 201 210 210 ASN ASN A . n A 1 202 VAL 202 211 211 VAL VAL A . n A 1 203 THR 203 212 212 THR THR A . n A 1 204 VAL 204 213 213 VAL VAL A . n A 1 205 LYS 205 214 214 LYS LYS A . n A 1 206 ASP 206 215 215 ASP ASP A . n A 1 207 ARG 207 216 216 ARG ARG A . n A 1 208 ILE 208 217 217 ILE ILE A . n A 1 209 MET 209 218 218 MET MET A . n A 1 210 THR 210 219 219 THR THR A . n A 1 211 LEU 211 220 220 LEU LEU A . n A 1 212 SER 212 221 221 SER SER A . n A 1 213 THR 213 222 222 THR THR A . n A 1 214 CYS 214 223 223 CYS CYS A . n A 1 215 GLU 215 224 224 GLU GLU A . n A 1 216 ASP 216 225 225 ASP ASP A . n A 1 217 ALA 217 226 226 ALA ALA A . n A 1 218 TYR 218 227 227 TYR TYR A . n A 1 219 SER 219 228 228 SER SER A . n A 1 220 GLU 220 229 229 GLU GLU A . n A 1 221 THR 221 230 230 THR THR A . n A 1 222 THR 222 231 231 THR THR A . n A 1 223 LYS 223 232 232 LYS LYS A . n A 1 224 ARG 224 233 233 ARG ARG A . n A 1 225 ILE 225 234 234 ILE ILE A . n A 1 226 VAL 226 235 235 VAL VAL A . n A 1 227 VAL 227 236 236 VAL VAL A . n A 1 228 VAL 228 237 237 VAL VAL A . n A 1 229 ALA 229 238 238 ALA ALA A . n A 1 230 LYS 230 239 239 LYS LYS A . n A 1 231 ILE 231 240 240 ILE ILE A . n A 1 232 ILE 232 241 241 ILE ILE A . n A 1 233 LYS 233 242 242 LYS LYS A . n A 1 234 VAL 234 243 243 VAL VAL A . n A 1 235 SER 235 244 244 SER SER A . n B 2 1 GLY 1 245 245 GLY GLY B . n B 2 2 GLY 2 246 246 GLY GLY B . n B 2 3 GLY 3 247 247 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ETM 1 248 248 ETM ETM A . D 4 HOH 1 249 249 HOH HOH A . D 4 HOH 2 250 250 HOH HOH A . D 4 HOH 3 251 251 HOH HOH A . D 4 HOH 4 252 252 HOH HOH A . D 4 HOH 5 253 253 HOH HOH A . D 4 HOH 6 254 254 HOH HOH A . D 4 HOH 7 255 255 HOH HOH A . D 4 HOH 8 256 256 HOH HOH A . D 4 HOH 9 257 257 HOH HOH A . D 4 HOH 10 258 258 HOH HOH A . D 4 HOH 11 259 259 HOH HOH A . D 4 HOH 12 260 260 HOH HOH A . D 4 HOH 13 261 261 HOH HOH A . D 4 HOH 14 262 262 HOH HOH A . D 4 HOH 15 263 263 HOH HOH A . D 4 HOH 16 264 264 HOH HOH A . D 4 HOH 17 265 265 HOH HOH A . D 4 HOH 18 266 266 HOH HOH A . D 4 HOH 19 267 267 HOH HOH A . D 4 HOH 20 268 268 HOH HOH A . D 4 HOH 21 269 269 HOH HOH A . D 4 HOH 22 270 270 HOH HOH A . D 4 HOH 23 271 271 HOH HOH A . D 4 HOH 24 272 272 HOH HOH A . D 4 HOH 25 273 273 HOH HOH A . D 4 HOH 26 274 274 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-04-06 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 SCALEPACK 'data scaling' . ? 2 CNS phasing . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 32 ? ? -48.79 -16.17 2 1 GLN A 54 ? ? 37.45 -123.20 3 1 ALA A 55 ? ? -37.71 -37.38 4 1 ASN A 83 ? ? -171.32 73.92 5 1 LYS A 119 ? ? 71.97 -58.92 6 1 ASN A 120 ? ? -115.84 72.37 7 1 ASN A 135 ? ? 76.29 46.16 8 1 MET A 137 ? ? 48.53 -117.82 9 1 HIS A 153 ? ? -144.14 53.07 10 1 LYS A 178 ? ? -172.98 32.00 11 1 ILE A 182 ? ? -105.18 40.72 12 1 VAL A 213 ? ? -67.71 4.27 13 1 THR A 231 ? ? 45.96 86.37 14 1 LYS A 232 ? ? 176.24 98.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 10 ? A GLY 1 2 1 Y 1 A HIS 11 ? A HIS 2 3 1 Y 1 A HIS 12 ? A HIS 3 4 1 Y 1 A HIS 13 ? A HIS 4 5 1 Y 1 A HIS 14 ? A HIS 5 6 1 Y 1 A HIS 15 ? A HIS 6 7 1 Y 1 A HIS 16 ? A HIS 7 8 1 Y 1 A HIS 17 ? A HIS 8 9 1 Y 1 A HIS 18 ? A HIS 9 10 1 Y 1 A HIS 19 ? A HIS 10 11 1 Y 1 A HIS 20 ? A HIS 11 12 1 Y 1 A SER 21 ? A SER 12 13 1 Y 1 A SER 22 ? A SER 13 14 1 Y 1 A GLY 23 ? A GLY 14 15 1 Y 1 A HIS 24 ? A HIS 15 16 1 Y 1 A ILE 25 ? A ILE 16 17 1 Y 1 A SER 26 ? A SER 17 18 1 Y 1 A GLY 27 ? A GLY 18 19 1 Y 1 A ASP 28 ? A ASP 19 20 1 Y 1 A ALA 29 ? A ALA 20 21 1 Y 1 A MET 30 ? A MET 21 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '2-(TRIMETHYLAMMONIUM)ETHYL THIOL' ETM 4 water HOH #