HEADER REPLICATION 16-SEP-03 1QZE TITLE HHR23A PROTEIN STRUCTURE BASED ON RESIDUAL DIPOLAR COUPLING DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HHR23A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAD23A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR, PROTEASOME-MEDIATED DEGRADATION, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, REPLICATION EXPDTA SOLUTION NMR AUTHOR K.J.WALTERS,P.J.LECH,A.M.GOH,Q.WANG,P.M.HOWLEY REVDAT 4 22-MAY-24 1QZE 1 REMARK REVDAT 3 02-MAR-22 1QZE 1 REMARK SEQADV REVDAT 2 24-FEB-09 1QZE 1 VERSN REVDAT 1 21-OCT-03 1QZE 0 JRNL AUTH K.J.WALTERS,P.J.LECH,A.M.GOH,Q.WANG,P.M.HOWLEY JRNL TITL DNA-REPAIR PROTEIN HHR23A ALTERS ITS PROTEIN STRUCTURE UPON JRNL TITL 2 BINDING PROTEASOMAL SUBUNIT S5A JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 12694 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 14557549 JRNL DOI 10.1073/PNAS.1634989100 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODULE 1.0 REMARK 3 AUTHORS : DOSSET, HUS, MARION, BLACKLEDGE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020255. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.55 MM 15N, HHR23A; 20MM NAPO4 REMARK 210 PH 6.5; 100 MM NACL;7.5 MG/ML REMARK 210 PF1 PHAGE; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : IPAP [1H,15N] HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MODULE 1.0 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LYS A 78 REMARK 465 THR A 79 REMARK 465 LYS A 80 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 GLN A 83 REMARK 465 GLY A 84 REMARK 465 THR A 85 REMARK 465 SER A 86 REMARK 465 ALA A 87 REMARK 465 PRO A 88 REMARK 465 PRO A 89 REMARK 465 GLU A 90 REMARK 465 ALA A 91 REMARK 465 SER A 92 REMARK 465 PRO A 93 REMARK 465 THR A 94 REMARK 465 ALA A 95 REMARK 465 ALA A 96 REMARK 465 PRO A 97 REMARK 465 GLU A 98 REMARK 465 SER A 99 REMARK 465 SER A 100 REMARK 465 THR A 101 REMARK 465 SER A 102 REMARK 465 PHE A 103 REMARK 465 PRO A 104 REMARK 465 PRO A 105 REMARK 465 ALA A 106 REMARK 465 PRO A 107 REMARK 465 THR A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 MET A 111 REMARK 465 SER A 112 REMARK 465 HIS A 113 REMARK 465 PRO A 114 REMARK 465 PRO A 115 REMARK 465 PRO A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 ARG A 119 REMARK 465 GLU A 120 REMARK 465 ASP A 121 REMARK 465 LYS A 122 REMARK 465 SER A 123 REMARK 465 PRO A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 GLU A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 PRO A 130 REMARK 465 THR A 131 REMARK 465 THR A 132 REMARK 465 SER A 133 REMARK 465 PRO A 134 REMARK 465 GLU A 135 REMARK 465 SER A 136 REMARK 465 VAL A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 SER A 140 REMARK 465 VAL A 141 REMARK 465 PRO A 142 REMARK 465 SER A 143 REMARK 465 SER A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 ARG A 149 REMARK 465 GLU A 150 REMARK 465 GLU A 151 REMARK 465 ASP A 152 REMARK 465 ALA A 153 REMARK 465 ALA A 154 REMARK 465 SER A 155 REMARK 465 THR A 156 REMARK 465 LEU A 157 REMARK 465 VAL A 158 REMARK 465 THR A 159 REMARK 465 GLY A 201 REMARK 465 ILE A 202 REMARK 465 PRO A 203 REMARK 465 GLY A 204 REMARK 465 SER A 205 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 HIS A 210 REMARK 465 GLY A 211 REMARK 465 SER A 212 REMARK 465 VAL A 213 REMARK 465 GLN A 214 REMARK 465 GLU A 215 REMARK 465 SER A 216 REMARK 465 GLN A 217 REMARK 465 VAL A 218 REMARK 465 SER A 219 REMARK 465 GLU A 220 REMARK 465 GLN A 221 REMARK 465 PRO A 222 REMARK 465 ALA A 223 REMARK 465 THR A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 PRO A 231 REMARK 465 LEU A 284 REMARK 465 ASN A 285 REMARK 465 GLU A 286 REMARK 465 PRO A 287 REMARK 465 PRO A 288 REMARK 465 GLY A 289 REMARK 465 GLU A 290 REMARK 465 LEU A 291 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ILE A 294 REMARK 465 SER A 295 REMARK 465 ASP A 296 REMARK 465 VAL A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 VAL A 301 REMARK 465 GLY A 302 REMARK 465 ALA A 303 REMARK 465 ILE A 304 REMARK 465 GLY A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 PRO A 309 REMARK 465 GLN A 310 REMARK 465 MET A 311 REMARK 465 ASN A 312 REMARK 465 TYR A 313 REMARK 465 ILE A 314 REMARK 465 GLN A 315 REMARK 465 VAL A 316 REMARK 465 ASP A 361 REMARK 465 ASP A 362 REMARK 465 GLU A 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 25 O VAL A 59 1.49 REMARK 500 O ARG A 193 H TYR A 197 1.54 REMARK 500 HZ2 LYS A 29 O GLN A 46 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 122.25 -175.45 REMARK 500 GLN A 12 35.52 77.79 REMARK 500 PHE A 15 -153.66 -164.06 REMARK 500 ARG A 18 -46.71 -143.51 REMARK 500 MET A 19 -148.97 36.25 REMARK 500 ASP A 22 -28.06 -177.59 REMARK 500 ALA A 40 22.92 -152.00 REMARK 500 PRO A 42 -162.98 -79.15 REMARK 500 ALA A 51 57.96 -155.96 REMARK 500 SER A 56 -172.64 -65.50 REMARK 500 SER A 172 -31.88 -38.62 REMARK 500 TYR A 175 174.60 -59.44 REMARK 500 GLU A 176 -152.29 -83.03 REMARK 500 ARG A 177 -61.35 -107.53 REMARK 500 ASN A 189 34.55 37.67 REMARK 500 HIS A 192 -83.08 -69.55 REMARK 500 GLN A 261 -71.99 -108.16 REMARK 500 PRO A 333 -159.15 -70.08 REMARK 500 GLU A 334 -71.18 -117.00 REMARK 500 VAL A 337 -61.54 -90.44 REMARK 500 ALA A 343 -72.29 -79.91 REMARK 500 CYS A 344 -65.07 -125.14 REMARK 500 ASN A 359 -64.47 -95.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1 ALA A 2 -145.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 18 0.32 SIDE CHAIN REMARK 500 ARG A 38 0.23 SIDE CHAIN REMARK 500 ARG A 62 0.30 SIDE CHAIN REMARK 500 ARG A 65 0.23 SIDE CHAIN REMARK 500 ARG A 177 0.23 SIDE CHAIN REMARK 500 ARG A 179 0.31 SIDE CHAIN REMARK 500 ARG A 185 0.24 SIDE CHAIN REMARK 500 ARG A 193 0.29 SIDE CHAIN REMARK 500 ARG A 236 0.32 SIDE CHAIN REMARK 500 ARG A 245 0.30 SIDE CHAIN REMARK 500 ARG A 275 0.22 SIDE CHAIN REMARK 500 ARG A 326 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OQY RELATED DB: PDB REMARK 900 BUNDLE OF STRUCTURES FOR THIS PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN THIS ANALYSIS THE LINKER REGIONS WERE REMARK 999 IGNORED. ALTHOUGH THEY DO STILL EXIST IN REMARK 999 THE SAMPLE, THOSE REGIONS WERE OMITTED REMARK 999 FROM THE CALCULATION. DBREF 1QZE A 2 363 UNP P54725 RD23A_HUMAN 2 363 SEQADV 1QZE GLY A -4 UNP P54725 CLONING ARTIFACT SEQADV 1QZE PRO A -3 UNP P54725 CLONING ARTIFACT SEQADV 1QZE LEU A -2 UNP P54725 CLONING ARTIFACT SEQADV 1QZE GLY A -1 UNP P54725 CLONING ARTIFACT SEQADV 1QZE SER A 0 UNP P54725 CLONING ARTIFACT SEQADV 1QZE SER A 1 UNP P54725 CLONING ARTIFACT SEQRES 1 A 368 GLY PRO LEU GLY SER SER ALA VAL THR ILE THR LEU LYS SEQRES 2 A 368 THR LEU GLN GLN GLN THR PHE LYS ILE ARG MET GLU PRO SEQRES 3 A 368 ASP GLU THR VAL LYS VAL LEU LYS GLU LYS ILE GLU ALA SEQRES 4 A 368 GLU LYS GLY ARG ASP ALA PHE PRO VAL ALA GLY GLN LYS SEQRES 5 A 368 LEU ILE TYR ALA GLY LYS ILE LEU SER ASP ASP VAL PRO SEQRES 6 A 368 ILE ARG ASP TYR ARG ILE ASP GLU LYS ASN PHE VAL VAL SEQRES 7 A 368 VAL MET VAL THR LYS THR LYS ALA GLY GLN GLY THR SER SEQRES 8 A 368 ALA PRO PRO GLU ALA SER PRO THR ALA ALA PRO GLU SER SEQRES 9 A 368 SER THR SER PHE PRO PRO ALA PRO THR SER GLY MET SER SEQRES 10 A 368 HIS PRO PRO PRO ALA ALA ARG GLU ASP LYS SER PRO SER SEQRES 11 A 368 GLU GLU SER ALA PRO THR THR SER PRO GLU SER VAL SER SEQRES 12 A 368 GLY SER VAL PRO SER SER GLY SER SER GLY ARG GLU GLU SEQRES 13 A 368 ASP ALA ALA SER THR LEU VAL THR GLY SER GLU TYR GLU SEQRES 14 A 368 THR MET LEU THR GLU ILE MET SER MET GLY TYR GLU ARG SEQRES 15 A 368 GLU ARG VAL VAL ALA ALA LEU ARG ALA SER TYR ASN ASN SEQRES 16 A 368 PRO HIS ARG ALA VAL GLU TYR LEU LEU THR GLY ILE PRO SEQRES 17 A 368 GLY SER PRO GLU PRO GLU HIS GLY SER VAL GLN GLU SER SEQRES 18 A 368 GLN VAL SER GLU GLN PRO ALA THR GLU ALA ALA GLY GLU SEQRES 19 A 368 ASN PRO LEU GLU PHE LEU ARG ASP GLN PRO GLN PHE GLN SEQRES 20 A 368 ASN MET ARG GLN VAL ILE GLN GLN ASN PRO ALA LEU LEU SEQRES 21 A 368 PRO ALA LEU LEU GLN GLN LEU GLY GLN GLU ASN PRO GLN SEQRES 22 A 368 LEU LEU GLN GLN ILE SER ARG HIS GLN GLU GLN PHE ILE SEQRES 23 A 368 GLN MET LEU ASN GLU PRO PRO GLY GLU LEU ALA ASP ILE SEQRES 24 A 368 SER ASP VAL GLU GLY GLU VAL GLY ALA ILE GLY GLU GLU SEQRES 25 A 368 ALA PRO GLN MET ASN TYR ILE GLN VAL THR PRO GLN GLU SEQRES 26 A 368 LYS GLU ALA ILE GLU ARG LEU LYS ALA LEU GLY PHE PRO SEQRES 27 A 368 GLU SER LEU VAL ILE GLN ALA TYR PHE ALA CYS GLU LYS SEQRES 28 A 368 ASN GLU ASN LEU ALA ALA ASN PHE LEU LEU SER GLN ASN SEQRES 29 A 368 PHE ASP ASP GLU HELIX 1 1 THR A 24 LYS A 36 1 13 HELIX 2 2 GLY A 160 SER A 172 1 13 HELIX 3 3 ARG A 177 SER A 187 1 11 HELIX 4 4 ASN A 190 THR A 200 1 11 HELIX 5 5 LEU A 232 ASP A 237 1 6 HELIX 6 6 GLN A 238 VAL A 247 1 10 HELIX 7 7 ILE A 248 ASN A 251 5 4 HELIX 8 8 ALA A 253 GLN A 261 1 9 HELIX 9 9 ASN A 266 MET A 283 1 18 HELIX 10 10 GLU A 320 GLY A 331 1 12 HELIX 11 11 GLU A 334 TYR A 341 1 8 HELIX 12 12 ASN A 349 ASN A 359 1 11 SHEET 1 A 5 PHE A 15 ILE A 17 0 SHEET 2 A 5 ILE A 5 THR A 9 -1 N ILE A 5 O ILE A 17 SHEET 3 A 5 VAL A 72 THR A 77 1 O VAL A 74 N LYS A 8 SHEET 4 A 5 GLY A 45 ILE A 49 -1 N LYS A 47 O MET A 75 SHEET 5 A 5 ILE A 54 LEU A 55 -1 O LEU A 55 N LEU A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000