HEADER TRANSFERASE 19-SEP-03 1R0C TITLE PRODUCTS IN THE T STATE OF ASPARTATE TRANSCARBAMYLASE: CRYSTAL TITLE 2 STRUCTURE OF THE PHOSPHATE AND N-CARBAMYL-L-ASPARTATE LIGATED ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN; COMPND 3 CHAIN: A, G; COMPND 4 SYNONYM: ASPARTATE TRANSCARBAMYLASE, ATCASE; COMPND 5 EC: 2.1.3.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN; COMPND 9 CHAIN: B, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PYRB OR B4245 OR C5345 OR Z5856 OR ECS5222 OR SF4245 OR S4507; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: EK1104; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEK54; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: PYRI OR B4244 OR C5344 OR Z5855 OR ECS5221; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: EK1104; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PEK54 KEYWDS ASPARTATE TRANSCARBAMYLASE, ASPARTATE CARBAMOYLTRANSFERASE, PRODUCTS, KEYWDS 2 N-CARBAMYL-L-ASPARTATE(CLA), PHOSPHATE, ATCASE-PRODUCTS COMPLEX, T KEYWDS 3 STATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,W.N.LIPSCOMB REVDAT 4 23-AUG-23 1R0C 1 REMARK LINK REVDAT 3 13-JUL-11 1R0C 1 VERSN REVDAT 2 24-FEB-09 1R0C 1 VERSN REVDAT 1 08-JUN-04 1R0C 0 JRNL AUTH J.HUANG,W.N.LIPSCOMB JRNL TITL PRODUCTS IN THE T-STATE OF ASPARTATE TRANSCARBAMYLASE: JRNL TITL 2 CRYSTAL STRUCTURE OF THE PHOSPHATE AND JRNL TITL 3 N-CARBAMYL-L-ASPARTATE LIGATED ENZYME JRNL REF BIOCHEMISTRY V. 43 6422 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15157076 JRNL DOI 10.1021/BI0302144 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.JIN,B.STEC,W.N.LIPSCOMB,E.R.KANTROWITZ REMARK 1 TITL INSIGHTS INTO THE MECHANISMS OF CATALYSIS AND HETEROTROPIC REMARK 1 TITL 2 REGULATION OF ESCHERICHIA COLI ASPARTATE TRANSCARBAMOYLASE REMARK 1 TITL 3 BASED UPON A STRUCTURE OF THE ENZYME COMPLEXED WITH THE REMARK 1 TITL 4 BISUBSTRATE ANALOGUE N-PHOSPHONACETYL-L-ASPARTATE AT 2.1A REMARK 1 REF PROTEINS V. 37 729 1999 REMARK 1 REFN ISSN 0887-3585 REMARK 1 DOI 10.1002/(SICI)1097-0134(19991201)37:4<729::AID-PROT21>3.3.CO REMARK 1 DOI 2 ;2-6 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.C.STEVENS,J.E.GOUAUX,W.N.LIPSCOMB REMARK 1 TITL STRUCTURAL CONSEQUENCES OF EFFECTOR BINDING TO THE T STATE REMARK 1 TITL 2 OF ASPARTATE CARBAMOYLTRANSFERASE: CRYSTAL STRUCTURES OF THE REMARK 1 TITL 3 UNLIGATED AND ATP- AND CTP-COMPLEXED ENZYMES AT 2.6A REMARK 1 TITL 4 RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 29 7691 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.K.WILLIAMS,B.STEC,E.R.KANTROWITZ REMARK 1 TITL A SINGLE MUTATION IN THE REGULATORY CHANIN OF ESCHERICHIA REMARK 1 TITL 2 COLI ASPARTATE TRANSCARBAMOYLASE RESULTS IN AN EXTREME REMARK 1 TITL 3 T-STATE STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 281 121 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.1923 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 43885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2178 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 110 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 553 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05700 REMARK 3 B22 (A**2) : -0.16800 REMARK 3 B33 (A**2) : 0.22500 REMARK 3 B12 (A**2) : -4.30600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.71 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.866 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : HORIZONTALLY BENT SI(111), REMARK 200 ASSYMETRICALLY CUT WITH WATER REMARK 200 COOOLED CU BLOCK REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1D09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES-NA, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.38800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.17443 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.00567 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.38800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.17443 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.00567 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.38800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.17443 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.00567 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.34886 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 132.01133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.34886 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 132.01133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.34886 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 132.01133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE OTHER FOUR CATALYTIC CHAINS AND FOUR REGULATORY CHAINS REMARK 300 OF THE BIOLOGICAL ASSEMBLY CAN BE GENERATED BY THE SYMMETRIC REMARK 300 OPERATIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 35730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 109940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 64.38800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 111.52329 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -64.38800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 111.52329 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3058 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3116 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3126 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1045 LIES ON A SPECIAL POSITION. REMARK 375 HOH G3066 LIES ON A SPECIAL POSITION. REMARK 375 HOH G3120 LIES ON A SPECIAL POSITION. REMARK 375 HOH H1040 LIES ON A SPECIAL POSITION. REMARK 375 HOH H1086 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 36 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU A 267 N - CA - C ANGL. DEV. = 21.0 DEGREES REMARK 500 PRO A 268 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO G 36 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO G 135 CA - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 LEU G 267 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 PRO G 268 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 33.23 -91.42 REMARK 500 SER A 52 73.42 -172.64 REMARK 500 SER A 76 72.74 -165.65 REMARK 500 LYS A 83 117.59 -38.33 REMARK 500 ASN A 121 -10.68 86.70 REMARK 500 ALA A 127 -74.04 -54.25 REMARK 500 ASN A 132 112.67 -172.71 REMARK 500 GLN A 133 71.54 63.39 REMARK 500 ASP A 190 -39.11 -39.03 REMARK 500 MET A 219 -48.53 -16.16 REMARK 500 TYR A 240 -87.00 -56.76 REMARK 500 ALA A 241 -54.53 -29.39 REMARK 500 LYS A 244 -14.69 -48.01 REMARK 500 GLN A 246 6.53 53.91 REMARK 500 VAL A 270 128.94 151.85 REMARK 500 ASP A 271 9.38 80.08 REMARK 500 TRP A 284 13.73 -140.93 REMARK 500 VAL A 309 -147.78 -95.33 REMARK 500 ASP B 4 128.14 -179.41 REMARK 500 GLN B 8 17.15 -62.25 REMARK 500 VAL B 9 126.82 -173.17 REMARK 500 ARG B 14 106.20 59.55 REMARK 500 HIS B 20 87.85 59.33 REMARK 500 LYS B 34 60.91 38.85 REMARK 500 ASN B 47 39.12 71.68 REMARK 500 ARG B 55 142.27 -32.25 REMARK 500 THR B 64 127.14 -173.86 REMARK 500 SER B 67 -168.36 -67.85 REMARK 500 GLN B 73 18.16 -64.46 REMARK 500 ASN B 88 11.59 59.50 REMARK 500 ASN B 105 30.50 39.86 REMARK 500 VAL B 106 -43.25 -144.75 REMARK 500 ALA B 152 61.37 -115.52 REMARK 500 SER G 52 73.95 -174.38 REMARK 500 SER G 74 54.27 -119.19 REMARK 500 ASP G 75 130.75 -36.27 REMARK 500 SER G 76 46.67 -174.84 REMARK 500 LYS G 83 88.15 -51.07 REMARK 500 LYS G 84 -27.75 -31.67 REMARK 500 ASN G 121 -9.66 86.04 REMARK 500 ALA G 127 -71.48 -54.60 REMARK 500 GLN G 133 83.28 55.04 REMARK 500 HIS G 134 77.30 -104.75 REMARK 500 MET G 219 -53.23 -14.68 REMARK 500 TYR G 240 -85.69 -53.92 REMARK 500 ALA G 241 -57.48 -28.76 REMARK 500 LYS G 244 -5.49 -45.11 REMARK 500 GLN G 246 14.80 48.86 REMARK 500 VAL G 270 135.09 159.96 REMARK 500 GLU G 272 -48.11 -135.08 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 109 SG REMARK 620 2 CYS B 114 SG 109.5 REMARK 620 3 CYS B 138 SG 106.7 106.8 REMARK 620 4 CYS B 141 SG 101.5 118.0 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 109 SG REMARK 620 2 CYS H 114 SG 117.1 REMARK 620 3 CYS H 138 SG 108.4 103.7 REMARK 620 4 CYS H 141 SG 107.6 112.0 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 G 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCD G 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R0B RELATED DB: PDB REMARK 900 CITRATE (AN PRODUCT ANOLOGUE) AND PHOSPHATE LIGATED ATCASE IN R REMARK 900 STATE DBREF 1R0C A 1 310 UNP P0A786 PYRB_ECOLI 1 310 DBREF 1R0C B 1 153 UNP P0A7F3 PYRI_ECOLI 1 152 DBREF 1R0C G 1 310 UNP P0A786 PYRB_ECOLI 1 310 DBREF 1R0C H 1 153 UNP P0A7F3 PYRI_ECOLI 1 152 SEQRES 1 A 310 ALA ASN PRO LEU TYR GLN LYS HIS ILE ILE SER ILE ASN SEQRES 2 A 310 ASP LEU SER ARG ASP ASP LEU ASN LEU VAL LEU ALA THR SEQRES 3 A 310 ALA ALA LYS LEU LYS ALA ASN PRO GLN PRO GLU LEU LEU SEQRES 4 A 310 LYS HIS LYS VAL ILE ALA SER CYS PHE PHE GLU ALA SER SEQRES 5 A 310 THR ARG THR ARG LEU SER PHE GLU THR SER MET HIS ARG SEQRES 6 A 310 LEU GLY ALA SER VAL VAL GLY PHE SER ASP SER ALA ASN SEQRES 7 A 310 THR SER LEU GLY LYS LYS GLY GLU THR LEU ALA ASP THR SEQRES 8 A 310 ILE SER VAL ILE SER THR TYR VAL ASP ALA ILE VAL MET SEQRES 9 A 310 ARG HIS PRO GLN GLU GLY ALA ALA ARG LEU ALA THR GLU SEQRES 10 A 310 PHE SER GLY ASN VAL PRO VAL LEU ASN ALA GLY ASP GLY SEQRES 11 A 310 SER ASN GLN HIS PRO THR GLN THR LEU LEU ASP LEU PHE SEQRES 12 A 310 THR ILE GLN GLU THR GLN GLY ARG LEU ASP ASN LEU HIS SEQRES 13 A 310 VAL ALA MET VAL GLY ASP LEU LYS TYR GLY ARG THR VAL SEQRES 14 A 310 HIS SER LEU THR GLN ALA LEU ALA LYS PHE ASP GLY ASN SEQRES 15 A 310 ARG PHE TYR PHE ILE ALA PRO ASP ALA LEU ALA MET PRO SEQRES 16 A 310 GLN TYR ILE LEU ASP MET LEU ASP GLU LYS GLY ILE ALA SEQRES 17 A 310 TRP SER LEU HIS SER SER ILE GLU GLU VAL MET ALA GLU SEQRES 18 A 310 VAL ASP ILE LEU TYR MET THR ARG VAL GLN LYS GLU ARG SEQRES 19 A 310 LEU ASP PRO SER GLU TYR ALA ASN VAL LYS ALA GLN PHE SEQRES 20 A 310 VAL LEU ARG ALA SER ASP LEU HIS ASN ALA LYS ALA ASN SEQRES 21 A 310 MET LYS VAL LEU HIS PRO LEU PRO ARG VAL ASP GLU ILE SEQRES 22 A 310 ALA THR ASP VAL ASP LYS THR PRO HIS ALA TRP TYR PHE SEQRES 23 A 310 GLN GLN ALA GLY ASN GLY ILE PHE ALA ARG GLN ALA LEU SEQRES 24 A 310 LEU ALA LEU VAL LEU ASN ARG ASP LEU VAL LEU SEQRES 1 B 153 MET THR HIS ASP ASN LYS LEU GLN VAL GLU ALA ILE LYS SEQRES 2 B 153 ARG GLY THR VAL ILE ASP HIS ILE PRO ALA GLN ILE GLY SEQRES 3 B 153 PHE LYS LEU LEU SER LEU PHE LYS LEU THR GLU THR ASP SEQRES 4 B 153 GLN ARG ILE THR ILE GLY LEU ASN LEU PRO SER GLY GLU SEQRES 5 B 153 MET GLY ARG LYS ASP LEU ILE LYS ILE GLU ASN THR PHE SEQRES 6 B 153 LEU SER GLU ASP GLN VAL ASP GLN LEU ALA LEU TYR ALA SEQRES 7 B 153 PRO GLN ALA THR VAL ASN ARG ILE ASP ASN TYR GLU VAL SEQRES 8 B 153 VAL GLY LYS SER ARG PRO SER LEU PRO GLU ARG ILE ASP SEQRES 9 B 153 ASN VAL LEU VAL CYS PRO ASN SER ASN CYS ILE SER HIS SEQRES 10 B 153 ALA GLU PRO VAL SER SER SER PHE ALA VAL ARG LYS ARG SEQRES 11 B 153 ALA ASN ASP ILE ALA LEU LYS CYS LYS TYR CYS GLU LYS SEQRES 12 B 153 GLU PHE SER HIS ASN VAL VAL LEU ALA ASN SEQRES 1 G 310 ALA ASN PRO LEU TYR GLN LYS HIS ILE ILE SER ILE ASN SEQRES 2 G 310 ASP LEU SER ARG ASP ASP LEU ASN LEU VAL LEU ALA THR SEQRES 3 G 310 ALA ALA LYS LEU LYS ALA ASN PRO GLN PRO GLU LEU LEU SEQRES 4 G 310 LYS HIS LYS VAL ILE ALA SER CYS PHE PHE GLU ALA SER SEQRES 5 G 310 THR ARG THR ARG LEU SER PHE GLU THR SER MET HIS ARG SEQRES 6 G 310 LEU GLY ALA SER VAL VAL GLY PHE SER ASP SER ALA ASN SEQRES 7 G 310 THR SER LEU GLY LYS LYS GLY GLU THR LEU ALA ASP THR SEQRES 8 G 310 ILE SER VAL ILE SER THR TYR VAL ASP ALA ILE VAL MET SEQRES 9 G 310 ARG HIS PRO GLN GLU GLY ALA ALA ARG LEU ALA THR GLU SEQRES 10 G 310 PHE SER GLY ASN VAL PRO VAL LEU ASN ALA GLY ASP GLY SEQRES 11 G 310 SER ASN GLN HIS PRO THR GLN THR LEU LEU ASP LEU PHE SEQRES 12 G 310 THR ILE GLN GLU THR GLN GLY ARG LEU ASP ASN LEU HIS SEQRES 13 G 310 VAL ALA MET VAL GLY ASP LEU LYS TYR GLY ARG THR VAL SEQRES 14 G 310 HIS SER LEU THR GLN ALA LEU ALA LYS PHE ASP GLY ASN SEQRES 15 G 310 ARG PHE TYR PHE ILE ALA PRO ASP ALA LEU ALA MET PRO SEQRES 16 G 310 GLN TYR ILE LEU ASP MET LEU ASP GLU LYS GLY ILE ALA SEQRES 17 G 310 TRP SER LEU HIS SER SER ILE GLU GLU VAL MET ALA GLU SEQRES 18 G 310 VAL ASP ILE LEU TYR MET THR ARG VAL GLN LYS GLU ARG SEQRES 19 G 310 LEU ASP PRO SER GLU TYR ALA ASN VAL LYS ALA GLN PHE SEQRES 20 G 310 VAL LEU ARG ALA SER ASP LEU HIS ASN ALA LYS ALA ASN SEQRES 21 G 310 MET LYS VAL LEU HIS PRO LEU PRO ARG VAL ASP GLU ILE SEQRES 22 G 310 ALA THR ASP VAL ASP LYS THR PRO HIS ALA TRP TYR PHE SEQRES 23 G 310 GLN GLN ALA GLY ASN GLY ILE PHE ALA ARG GLN ALA LEU SEQRES 24 G 310 LEU ALA LEU VAL LEU ASN ARG ASP LEU VAL LEU SEQRES 1 H 153 MET THR HIS ASP ASN LYS LEU GLN VAL GLU ALA ILE LYS SEQRES 2 H 153 ARG GLY THR VAL ILE ASP HIS ILE PRO ALA GLN ILE GLY SEQRES 3 H 153 PHE LYS LEU LEU SER LEU PHE LYS LEU THR GLU THR ASP SEQRES 4 H 153 GLN ARG ILE THR ILE GLY LEU ASN LEU PRO SER GLY GLU SEQRES 5 H 153 MET GLY ARG LYS ASP LEU ILE LYS ILE GLU ASN THR PHE SEQRES 6 H 153 LEU SER GLU ASP GLN VAL ASP GLN LEU ALA LEU TYR ALA SEQRES 7 H 153 PRO GLN ALA THR VAL ASN ARG ILE ASP ASN TYR GLU VAL SEQRES 8 H 153 VAL GLY LYS SER ARG PRO SER LEU PRO GLU ARG ILE ASP SEQRES 9 H 153 ASN VAL LEU VAL CYS PRO ASN SER ASN CYS ILE SER HIS SEQRES 10 H 153 ALA GLU PRO VAL SER SER SER PHE ALA VAL ARG LYS ARG SEQRES 11 H 153 ALA ASN ASP ILE ALA LEU LYS CYS LYS TYR CYS GLU LYS SEQRES 12 H 153 GLU PHE SER HIS ASN VAL VAL LEU ALA ASN HET PO4 A3001 5 HET NCD A2001 12 HET ZN B1001 1 HET PO4 G3002 5 HET NCD G2002 12 HET ZN H1002 1 HETNAM PO4 PHOSPHATE ION HETNAM NCD N-CARBAMOYL-L-ASPARTATE HETNAM ZN ZINC ION FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 NCD 2(C5 H8 N2 O5) FORMUL 7 ZN 2(ZN 2+) FORMUL 11 HOH *553(H2 O) HELIX 1 1 SER A 11 LEU A 15 5 5 HELIX 2 2 SER A 16 ASN A 33 1 18 HELIX 3 3 SER A 52 LEU A 66 1 15 HELIX 4 4 THR A 87 SER A 96 1 10 HELIX 5 5 GLY A 110 GLU A 117 1 8 HELIX 6 6 HIS A 134 GLY A 150 1 17 HELIX 7 7 GLY A 166 ALA A 177 1 12 HELIX 8 8 PRO A 189 ALA A 193 5 5 HELIX 9 9 PRO A 195 LYS A 205 1 11 HELIX 10 10 SER A 214 VAL A 222 5 9 HELIX 11 11 GLN A 231 LEU A 235 5 5 HELIX 12 12 ASP A 236 LYS A 244 1 9 HELIX 13 13 ARG A 250 HIS A 255 5 6 HELIX 14 14 ALA A 274 ASP A 278 5 5 HELIX 15 15 TRP A 284 ASN A 305 1 22 HELIX 16 16 ILE B 25 PHE B 33 1 9 HELIX 17 17 SER B 67 GLN B 73 1 7 HELIX 18 18 HIS B 147 LEU B 151 1 5 HELIX 19 19 SER G 11 LEU G 15 5 5 HELIX 20 20 SER G 16 ASN G 33 1 18 HELIX 21 21 SER G 52 LEU G 66 1 15 HELIX 22 22 THR G 87 SER G 96 1 10 HELIX 23 23 GLY G 110 GLU G 117 1 8 HELIX 24 24 HIS G 134 GLY G 150 1 17 HELIX 25 25 GLY G 166 ALA G 177 1 12 HELIX 26 26 PRO G 189 ALA G 193 5 5 HELIX 27 27 PRO G 195 LYS G 205 1 11 HELIX 28 28 SER G 214 MET G 219 1 6 HELIX 29 29 ALA G 220 VAL G 222 5 3 HELIX 30 30 GLN G 231 LEU G 235 5 5 HELIX 31 31 ASP G 236 LYS G 244 1 9 HELIX 32 32 ARG G 250 HIS G 255 5 6 HELIX 33 33 ALA G 274 ASP G 278 5 5 HELIX 34 34 TRP G 284 ASN G 305 1 22 HELIX 35 35 ILE H 25 PHE H 33 1 9 HELIX 36 36 SER H 67 GLN H 73 1 7 HELIX 37 37 CYS H 114 ALA H 118 5 5 HELIX 38 38 HIS H 147 LEU H 151 1 5 SHEET 1 A 4 SER A 69 SER A 74 0 SHEET 2 A 4 VAL A 43 PHE A 48 1 N ILE A 44 O SER A 69 SHEET 3 A 4 ALA A 101 HIS A 106 1 O ALA A 101 N ALA A 45 SHEET 4 A 4 VAL A 124 ASP A 129 1 O LEU A 125 N ILE A 102 SHEET 1 B 5 ALA A 208 HIS A 212 0 SHEET 2 B 5 ARG A 183 ILE A 187 1 N PHE A 184 O ALA A 208 SHEET 3 B 5 HIS A 156 VAL A 160 1 N VAL A 157 O TYR A 185 SHEET 4 B 5 ILE A 224 MET A 227 1 O TYR A 226 N ALA A 158 SHEET 5 B 5 LYS A 262 LEU A 264 1 O LYS A 262 N LEU A 225 SHEET 1 C10 GLU B 90 SER B 95 0 SHEET 2 C10 THR B 82 ASP B 87 -1 N ASP B 87 O GLU B 90 SHEET 3 C10 GLY B 15 PRO B 22 -1 N ASP B 19 O THR B 82 SHEET 4 C10 LYS B 56 GLU B 62 -1 O ILE B 59 N ILE B 18 SHEET 5 C10 ILE B 42 LEU B 48 -1 N GLY B 45 O LEU B 58 SHEET 6 C10 ILE H 42 LEU H 48 -1 O ILE H 44 N ILE B 44 SHEET 7 C10 LYS H 56 GLU H 62 -1 O LEU H 58 N GLY H 45 SHEET 8 C10 GLY H 15 ILE H 21 -1 N ILE H 18 O ILE H 59 SHEET 9 C10 THR H 82 ASP H 87 -1 O THR H 82 N ASP H 19 SHEET 10 C10 GLU H 90 SER H 95 -1 O GLU H 90 N ASP H 87 SHEET 1 D 4 ARG B 102 ASP B 104 0 SHEET 2 D 4 SER B 124 ARG B 130 -1 O PHE B 125 N ILE B 103 SHEET 3 D 4 ASP B 133 CYS B 138 -1 O ALA B 135 N ARG B 128 SHEET 4 D 4 GLU B 144 SER B 146 -1 O PHE B 145 N LEU B 136 SHEET 1 E 4 SER G 69 PHE G 73 0 SHEET 2 E 4 VAL G 43 PHE G 48 1 N ILE G 44 O SER G 69 SHEET 3 E 4 ALA G 101 HIS G 106 1 O VAL G 103 N ALA G 45 SHEET 4 E 4 VAL G 124 ASP G 129 1 O LEU G 125 N ILE G 102 SHEET 1 F 5 TRP G 209 HIS G 212 0 SHEET 2 F 5 ARG G 183 ILE G 187 1 N PHE G 186 O SER G 210 SHEET 3 F 5 HIS G 156 VAL G 160 1 N VAL G 157 O ARG G 183 SHEET 4 F 5 ILE G 224 MET G 227 1 O TYR G 226 N ALA G 158 SHEET 5 F 5 LYS G 262 LEU G 264 1 O LYS G 262 N LEU G 225 SHEET 1 G 4 ARG H 102 ASP H 104 0 SHEET 2 G 4 SER H 124 ARG H 130 -1 O PHE H 125 N ILE H 103 SHEET 3 G 4 ASP H 133 CYS H 138 -1 O ALA H 135 N ARG H 128 SHEET 4 G 4 GLU H 144 SER H 146 -1 O PHE H 145 N LEU H 136 LINK SG CYS B 109 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 114 ZN ZN B1001 1555 1555 2.39 LINK SG CYS B 138 ZN ZN B1001 1555 1555 2.23 LINK SG CYS B 141 ZN ZN B1001 1555 1555 2.16 LINK SG CYS H 109 ZN ZN H1002 1555 1555 2.24 LINK SG CYS H 114 ZN ZN H1002 1555 1555 2.26 LINK SG CYS H 138 ZN ZN H1002 1555 1555 2.32 LINK SG CYS H 141 ZN ZN H1002 1555 1555 2.22 SITE 1 AC1 4 CYS B 109 CYS B 114 CYS B 138 CYS B 141 SITE 1 AC2 4 CYS H 109 CYS H 114 CYS H 138 CYS H 141 SITE 1 AC3 6 THR A 55 ARG A 105 HIS A 134 GLN A 137 SITE 2 AC3 6 NCD A2001 HOH A3084 SITE 1 AC4 5 THR G 55 ARG G 105 HIS G 134 GLN G 137 SITE 2 AC4 5 NCD G2002 SITE 1 AC5 10 ALA A 51 SER A 52 ARG A 54 THR A 55 SITE 2 AC5 10 SER A 80 LYS A 83 ARG A 105 PRO A 268 SITE 3 AC5 10 PO4 A3001 HOH A3084 SITE 1 AC6 8 ALA G 51 SER G 52 ARG G 54 THR G 55 SITE 2 AC6 8 SER G 80 LYS G 83 ARG G 105 PO4 G3002 CRYST1 128.776 128.776 198.017 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007765 0.004483 0.000000 0.00000 SCALE2 0.000000 0.008967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005050 0.00000