HEADER TRANSLATION, HYDROLASE 23-SEP-03 1R11 TITLE STRUCTURE DETERMINATION OF THE DIMERIC ENDONUCLEASE IN A PSEUDO-FACE- TITLE 2 CENTERD P21 SPACE GROUP CAVEAT 1R11 ONE INCORRECT CHIRAL CENTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-INTRON ENDONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SPLICING ENDONUCLEASE; INTRON ENDONUCLEASE; ENDA; COMPND 5 EC: 3.1.27.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: ENDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA SPLICING; ENDONUCLEASE; X-RAY CRYSTALLOGRAPHY, TRANSLATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,Y.ZHANG REVDAT 5 14-FEB-24 1R11 1 SEQADV REVDAT 4 13-JUL-11 1R11 1 VERSN REVDAT 3 24-FEB-09 1R11 1 VERSN REVDAT 2 17-OCT-06 1R11 1 REMARK REVDAT 1 09-MAR-04 1R11 0 JRNL AUTH Y.ZHANG,H.LI JRNL TITL STRUCTURE DETERMINATION OF A TRUNCATED DIMERIC SPLICING JRNL TITL 2 ENDONUCLEASE IN PSEUDO-FACE-CENTERED SPACE GROUP P2(1)2(1)2. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 447 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14993668 JRNL DOI 10.1107/S0907444903029482 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1645 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : 3.22000 REMARK 3 B33 (A**2) : -1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.032 REMARK 3 BOND ANGLES (DEGREES) : 2.766 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 8.339 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.380 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 20.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-CACODYLIC ACID PH 6.5 - 6.8, REMARK 280 20 MM (NH4)2SO4, 300-400 MM NACH2COOH, PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.08450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 15 CD2 REMARK 480 ARG A 59 NH1 REMARK 480 GLU A 116 OE2 REMARK 480 GLU A 127 OE2 REMARK 480 ILE A 128 CD1 REMARK 480 LEU A 178 CD2 REMARK 480 LEU A 197 CB REMARK 480 LEU A 198 CD2 REMARK 480 GLU A 211 OE1 REMARK 480 ARG A 247 NH1 REMARK 480 VAL A 285 CG1 REMARK 480 LYS B 41 NZ REMARK 480 ARG B 132 NH1 REMARK 480 ASP B 137 CG OD1 OD2 REMARK 480 ILE B 149 CG2 REMARK 480 LEU B 178 CD1 REMARK 480 LEU B 192 CD2 REMARK 480 ASN B 215 OD1 REMARK 480 LEU B 281 CD2 REMARK 480 ARG B 286 CD NE NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 219 OE1 GLU B 124 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 12 CD GLU B 204 1554 1.70 REMARK 500 NZ LYS B 12 OE1 GLU B 204 1554 1.75 REMARK 500 O ILE A 43 NH1 ARG B 103 2656 1.86 REMARK 500 NZ LYS B 12 OE2 GLU B 204 1554 2.05 REMARK 500 O LEU A 192 NH1 ARG B 24 1455 2.08 REMARK 500 O PRO A 136 CB ASN B 113 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 15 CG LEU A 15 CD2 -0.263 REMARK 500 LYS A 23 C ARG A 24 N 0.222 REMARK 500 SER A 45 C PHE A 46 N -0.139 REMARK 500 GLN A 83 C GLY A 84 N 0.172 REMARK 500 PHE A 86 C LEU A 87 N 0.181 REMARK 500 GLU A 106 C ILE A 107 N 0.150 REMARK 500 PHE A 114 C ASP A 115 N 0.195 REMARK 500 ASP A 115 C GLU A 116 N 0.276 REMARK 500 GLU A 116 CD GLU A 116 OE2 -0.099 REMARK 500 LEU A 117 C ARG A 118 N -0.244 REMARK 500 ARG A 118 C LEU A 119 N -0.174 REMARK 500 GLU A 127 CD GLU A 127 OE2 0.103 REMARK 500 GLU A 141 C GLN A 142 N 0.218 REMARK 500 LEU A 178 CG LEU A 178 CD2 -0.240 REMARK 500 LEU A 197 CB LEU A 197 CG -0.224 REMARK 500 VAL A 206 CB VAL A 206 CG1 -0.168 REMARK 500 VAL A 206 CB VAL A 206 CG2 -0.206 REMARK 500 VAL A 252 C ASP A 253 N 0.172 REMARK 500 SER A 258 C GLU A 259 N 0.208 REMARK 500 SER A 267 C ARG A 268 N 0.162 REMARK 500 GLU A 269 CG GLU A 269 CD -0.093 REMARK 500 LEU A 272 C ILE A 273 N -0.164 REMARK 500 ARG A 302 CG ARG A 302 CD -0.153 REMARK 500 LYS B 13 C SER B 14 N 0.152 REMARK 500 LEU B 15 C GLU B 16 N 0.207 REMARK 500 LYS B 41 CE LYS B 41 NZ -0.474 REMARK 500 GLU B 61 C ASP B 62 N 0.151 REMARK 500 VAL B 121 CB VAL B 121 CG2 -0.138 REMARK 500 ARG B 132 CZ ARG B 132 NH1 0.322 REMARK 500 ASP B 137 CB ASP B 137 CG -0.284 REMARK 500 VAL B 206 CB VAL B 206 CG1 -0.158 REMARK 500 VAL B 206 CB VAL B 206 CG2 -0.132 REMARK 500 TYR B 223 C ARG B 224 N 0.166 REMARK 500 TYR B 246 C ARG B 247 N 0.158 REMARK 500 ARG B 286 NE ARG B 286 CZ -0.079 REMARK 500 GLU B 301 CD GLU B 301 OE1 0.073 REMARK 500 VAL B 305 CB VAL B 305 CG1 -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 5 CA - C - N ANGL. DEV. = -16.9 DEGREES REMARK 500 PHE A 6 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 LEU A 15 CB - CG - CD2 ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 17 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LYS A 23 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP A 26 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 LEU A 33 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 GLU A 85 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 GLU A 109 CB - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 115 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 115 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 118 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 ASP A 123 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 GLU A 127 OE1 - CD - OE2 ANGL. DEV. = -24.0 DEGREES REMARK 500 GLU A 127 CG - CD - OE2 ANGL. DEV. = -24.5 DEGREES REMARK 500 ILE A 128 CB - CG1 - CD1 ANGL. DEV. = 18.9 DEGREES REMARK 500 LYS A 143 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 SER A 154 CB - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP A 155 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU A 178 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU A 178 CB - CG - CD2 ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU A 198 CD1 - CG - CD2 ANGL. DEV. = -21.3 DEGREES REMARK 500 VAL A 206 CG1 - CB - CG2 ANGL. DEV. = -17.0 DEGREES REMARK 500 ASN A 215 CB - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 ASP A 217 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 247 NH1 - CZ - NH2 ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 247 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 263 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU A 272 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 ILE A 273 C - N - CA ANGL. DEV. = 22.6 DEGREES REMARK 500 ASP A 274 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 VAL A 285 CG1 - CB - CG2 ANGL. DEV. = -15.8 DEGREES REMARK 500 ASP B 5 C - N - CA ANGL. DEV. = -19.4 DEGREES REMARK 500 LYS B 13 CD - CE - NZ ANGL. DEV. = -18.8 DEGREES REMARK 500 LYS B 41 CD - CE - NZ ANGL. DEV. = 44.6 DEGREES REMARK 500 ARG B 59 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 GLU B 61 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 ASP B 72 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 74 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 112 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 59.64 -149.43 REMARK 500 SER A 58 30.47 -85.24 REMARK 500 THR A 89 -119.10 -128.03 REMARK 500 MET A 104 -41.99 -23.97 REMARK 500 MET A 138 69.60 -108.06 REMARK 500 GLU A 141 65.87 -117.23 REMARK 500 SER A 154 -151.27 -70.73 REMARK 500 ASP A 155 -74.70 -60.32 REMARK 500 PHE A 166 -62.45 -92.61 REMARK 500 PHE A 170 34.23 76.53 REMARK 500 LYS A 175 60.42 -155.30 REMARK 500 ASN A 199 12.39 -141.25 REMARK 500 SER A 251 150.43 154.64 REMARK 500 ASP A 266 -140.11 49.21 REMARK 500 ILE A 273 -41.85 -20.87 REMARK 500 ALA B 11 108.70 -54.70 REMARK 500 MET B 60 135.92 -176.50 REMARK 500 GLN B 83 108.47 -179.17 REMARK 500 THR B 89 -141.74 -134.65 REMARK 500 GLU B 98 -39.71 -28.53 REMARK 500 ASN B 113 1.31 42.01 REMARK 500 PHE B 114 70.60 -119.75 REMARK 500 GLU B 116 -2.63 80.13 REMARK 500 ASP B 123 157.47 -43.07 REMARK 500 SER B 126 -0.34 81.41 REMARK 500 MET B 138 73.16 -108.23 REMARK 500 SER B 154 -133.87 -75.52 REMARK 500 ASP B 155 -74.86 -73.06 REMARK 500 PHE B 170 26.95 83.38 REMARK 500 ASN B 215 51.55 -112.93 REMARK 500 ARG B 229 13.64 -70.00 REMARK 500 SER B 251 158.84 172.62 REMARK 500 ASP B 266 -145.30 52.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 272 ILE A 273 147.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 115 0.14 SIDE CHAIN REMARK 500 GLU A 116 0.08 SIDE CHAIN REMARK 500 GLU A 127 0.23 SIDE CHAIN REMARK 500 ARG A 247 0.09 SIDE CHAIN REMARK 500 ASN B 215 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 5 -10.74 REMARK 500 LEU A 117 -13.42 REMARK 500 LEU A 119 13.01 REMARK 500 LEU A 197 14.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R0V RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN DIFFERENT SPACE GROUP DBREF 1R11 A 1 305 UNP O29362 ENDA_ARCFU 1 305 DBREF 1R11 B 1 305 UNP O29362 ENDA_ARCFU 1 305 SEQADV 1R11 VAL A 152 UNP O29362 ILE 152 CONFLICT SEQADV 1R11 VAL B 152 UNP O29362 ILE 152 CONFLICT SEQRES 1 A 305 MET ILE GLY GLY ASP PHE ALA VAL VAL LYS ALA LYS LYS SEQRES 2 A 305 SER LEU GLU ARG ARG GLY PHE GLY VAL LYS ARG GLY ASP SEQRES 3 A 305 LYS ILE TYR LEU HIS PRO LEU GLU VAL VAL TYR LEU GLN SEQRES 4 A 305 ILE LYS GLY ILE GLU SER PHE GLY GLU LEU GLU ASP VAL SEQRES 5 A 305 LEU SER TRP ALA GLU SER ARG MET GLU ASP PHE SER THR SEQRES 6 A 305 TYR TYR PHE VAL TYR GLU ASP LEU ARG ASP ARG GLY ASN SEQRES 7 A 305 LYS VAL LYS ILE GLN GLY GLU PHE LEU LEU THR LYS LYS SEQRES 8 A 305 PRO TYR LEU PRO ILE SER GLU ARG LYS THR ILE ARG MET SEQRES 9 A 305 GLU GLU ILE ALA GLU LYS ALA ARG ASN PHE ASP GLU LEU SEQRES 10 A 305 ARG LEU ALA VAL VAL ASP GLU GLU SER GLU ILE THR TYR SEQRES 11 A 305 PHE ARG VAL TYR GLU PRO ASP MET MET GLY GLU GLN LYS SEQRES 12 A 305 GLU GLU LEU PRO GLU ILE ALA GLY VAL LEU SER ASP GLU SEQRES 13 A 305 TYR VAL ILE THR LYS GLN THR GLU ILE PHE SER ARG TYR SEQRES 14 A 305 PHE TYR GLY SER GLU LYS GLY ASP LEU VAL THR LEU SER SEQRES 15 A 305 LEU ILE GLU SER LEU TYR LEU LEU ASP LEU GLY LYS LEU SEQRES 16 A 305 ASN LEU LEU ASN ALA ASP ARG GLU GLU LEU VAL LYS ARG SEQRES 17 A 305 ALA ARG GLU VAL GLU ARG ASN PHE ASP ARG ARG TYR GLU SEQRES 18 A 305 VAL TYR ARG ASN LEU LYS GLU ARG GLY PHE VAL VAL LYS SEQRES 19 A 305 THR GLY PHE LYS PHE GLY SER GLU PHE ARG VAL TYR ARG SEQRES 20 A 305 LYS VAL GLU SER VAL ASP ASP LEU PRO HIS SER GLU TYR SEQRES 21 A 305 LEU VAL ASP ILE ALA ASP SER ARG GLU ILE ARG LEU ILE SEQRES 22 A 305 ASP LEU ALA ARG ALA VAL ARG LEU ALA GLN ASN VAL ARG SEQRES 23 A 305 LYS ARG MET VAL PHE ALA TYR GLY LYS ASN TYR LEU CYS SEQRES 24 A 305 PHE GLU ARG VAL LYS VAL SEQRES 1 B 305 MET ILE GLY GLY ASP PHE ALA VAL VAL LYS ALA LYS LYS SEQRES 2 B 305 SER LEU GLU ARG ARG GLY PHE GLY VAL LYS ARG GLY ASP SEQRES 3 B 305 LYS ILE TYR LEU HIS PRO LEU GLU VAL VAL TYR LEU GLN SEQRES 4 B 305 ILE LYS GLY ILE GLU SER PHE GLY GLU LEU GLU ASP VAL SEQRES 5 B 305 LEU SER TRP ALA GLU SER ARG MET GLU ASP PHE SER THR SEQRES 6 B 305 TYR TYR PHE VAL TYR GLU ASP LEU ARG ASP ARG GLY ASN SEQRES 7 B 305 LYS VAL LYS ILE GLN GLY GLU PHE LEU LEU THR LYS LYS SEQRES 8 B 305 PRO TYR LEU PRO ILE SER GLU ARG LYS THR ILE ARG MET SEQRES 9 B 305 GLU GLU ILE ALA GLU LYS ALA ARG ASN PHE ASP GLU LEU SEQRES 10 B 305 ARG LEU ALA VAL VAL ASP GLU GLU SER GLU ILE THR TYR SEQRES 11 B 305 PHE ARG VAL TYR GLU PRO ASP MET MET GLY GLU GLN LYS SEQRES 12 B 305 GLU GLU LEU PRO GLU ILE ALA GLY VAL LEU SER ASP GLU SEQRES 13 B 305 TYR VAL ILE THR LYS GLN THR GLU ILE PHE SER ARG TYR SEQRES 14 B 305 PHE TYR GLY SER GLU LYS GLY ASP LEU VAL THR LEU SER SEQRES 15 B 305 LEU ILE GLU SER LEU TYR LEU LEU ASP LEU GLY LYS LEU SEQRES 16 B 305 ASN LEU LEU ASN ALA ASP ARG GLU GLU LEU VAL LYS ARG SEQRES 17 B 305 ALA ARG GLU VAL GLU ARG ASN PHE ASP ARG ARG TYR GLU SEQRES 18 B 305 VAL TYR ARG ASN LEU LYS GLU ARG GLY PHE VAL VAL LYS SEQRES 19 B 305 THR GLY PHE LYS PHE GLY SER GLU PHE ARG VAL TYR ARG SEQRES 20 B 305 LYS VAL GLU SER VAL ASP ASP LEU PRO HIS SER GLU TYR SEQRES 21 B 305 LEU VAL ASP ILE ALA ASP SER ARG GLU ILE ARG LEU ILE SEQRES 22 B 305 ASP LEU ALA ARG ALA VAL ARG LEU ALA GLN ASN VAL ARG SEQRES 23 B 305 LYS ARG MET VAL PHE ALA TYR GLY LYS ASN TYR LEU CYS SEQRES 24 B 305 PHE GLU ARG VAL LYS VAL HELIX 1 1 LYS A 12 ARG A 17 1 6 HELIX 2 2 HIS A 31 LYS A 41 1 11 HELIX 3 3 GLU A 48 SER A 58 1 11 HELIX 4 4 ASP A 62 ARG A 76 1 15 HELIX 5 5 ARG A 103 GLU A 109 1 7 HELIX 6 6 THR A 163 ARG A 168 1 6 HELIX 7 7 SER A 182 LEU A 192 1 11 HELIX 8 8 ASP A 201 GLU A 213 1 13 HELIX 9 9 ASN A 215 ARG A 229 1 15 HELIX 10 10 PHE A 237 GLY A 240 5 4 HELIX 11 11 SER A 251 SER A 258 5 8 HELIX 12 12 LEU A 272 VAL A 285 1 14 HELIX 13 13 LYS B 12 ARG B 17 1 6 HELIX 14 14 HIS B 31 LYS B 41 1 11 HELIX 15 15 GLU B 48 SER B 58 1 11 HELIX 16 16 ASP B 62 ARG B 76 1 15 HELIX 17 17 ARG B 103 ARG B 112 1 10 HELIX 18 18 THR B 163 ARG B 168 1 6 HELIX 19 19 SER B 182 LEU B 192 1 11 HELIX 20 20 ASP B 201 GLU B 213 1 13 HELIX 21 21 ASN B 215 ARG B 229 1 15 HELIX 22 22 PHE B 237 GLY B 240 5 4 HELIX 23 23 SER B 251 LEU B 255 5 5 HELIX 24 24 LEU B 272 VAL B 285 1 14 SHEET 1 A 3 ALA A 7 LYS A 10 0 SHEET 2 A 3 LYS A 27 LEU A 30 -1 O LEU A 30 N ALA A 7 SHEET 3 A 3 VAL A 22 LYS A 23 -1 N VAL A 22 O TYR A 29 SHEET 1 B10 LYS A 81 GLN A 83 0 SHEET 2 B10 PHE A 86 LEU A 88 -1 O PHE A 86 N GLN A 83 SHEET 3 B10 PRO A 92 SER A 97 -1 O TYR A 93 N LEU A 87 SHEET 4 B10 ARG A 118 VAL A 122 1 O ARG A 118 N LEU A 94 SHEET 5 B10 ILE A 128 TYR A 134 -1 O PHE A 131 N LEU A 119 SHEET 6 B10 ASN A 296 VAL A 303 -1 O GLU A 301 N ARG A 132 SHEET 7 B10 ARG A 288 TYR A 293 -1 N PHE A 291 O LEU A 298 SHEET 8 B10 TYR A 260 ILE A 264 1 N LEU A 261 O ARG A 288 SHEET 9 B10 PHE A 243 TYR A 246 -1 N VAL A 245 O TYR A 260 SHEET 10 B10 VAL A 232 THR A 235 -1 N LYS A 234 O ARG A 244 SHEET 1 C 2 THR A 101 ILE A 102 0 SHEET 2 C 2 ILE A 270 ARG A 271 -1 O ILE A 270 N ILE A 102 SHEET 1 D 5 SER A 173 LYS A 175 0 SHEET 2 D 5 LEU A 178 LEU A 181 -1 O LEU A 178 N LYS A 175 SHEET 3 D 5 VAL A 158 THR A 160 -1 N VAL A 158 O LEU A 181 SHEET 4 D 5 ILE A 149 LEU A 153 -1 N VAL A 152 O ILE A 159 SHEET 5 D 5 LEU A 195 LEU A 197 1 O ASN A 196 N ILE A 149 SHEET 1 E 3 ALA B 7 LYS B 10 0 SHEET 2 E 3 LYS B 27 LEU B 30 -1 O LEU B 30 N ALA B 7 SHEET 3 E 3 VAL B 22 ARG B 24 -1 N ARG B 24 O LYS B 27 SHEET 1 F10 LYS B 81 GLN B 83 0 SHEET 2 F10 PHE B 86 LEU B 88 -1 O PHE B 86 N GLN B 83 SHEET 3 F10 PRO B 92 SER B 97 -1 O TYR B 93 N LEU B 87 SHEET 4 F10 ARG B 118 VAL B 122 1 O ARG B 118 N LEU B 94 SHEET 5 F10 ILE B 128 TYR B 134 -1 O PHE B 131 N LEU B 119 SHEET 6 F10 ASN B 296 VAL B 303 -1 O GLU B 301 N ARG B 132 SHEET 7 F10 ARG B 288 TYR B 293 -1 N TYR B 293 O ASN B 296 SHEET 8 F10 TYR B 260 ILE B 264 1 N LEU B 261 O ARG B 288 SHEET 9 F10 PHE B 243 TYR B 246 -1 N PHE B 243 O VAL B 262 SHEET 10 F10 VAL B 232 THR B 235 -1 N LYS B 234 O ARG B 244 SHEET 1 G 2 THR B 101 ILE B 102 0 SHEET 2 G 2 ILE B 270 ARG B 271 -1 O ILE B 270 N ILE B 102 SHEET 1 H 5 SER B 173 LYS B 175 0 SHEET 2 H 5 LEU B 178 LEU B 181 -1 O THR B 180 N SER B 173 SHEET 3 H 5 VAL B 158 THR B 160 -1 N VAL B 158 O LEU B 181 SHEET 4 H 5 ILE B 149 LEU B 153 -1 N VAL B 152 O ILE B 159 SHEET 5 H 5 LEU B 195 LEU B 197 1 O ASN B 196 N ILE B 149 CRYST1 52.412 74.169 84.855 90.00 106.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019080 0.000000 0.005518 0.00000 SCALE2 0.000000 0.013483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012268 0.00000