HEADER TRANSFERASE 07-DEC-98 1R2A TITLE THE MOLECULAR BASIS FOR PROTEIN KINASE A ANCHORING REVEALED BY TITLE 2 SOLUTION NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CAMP-DEPENDENT PROTEIN KINASE TYPE II REGULATORY COMPND 3 SUBUNIT); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: DIMERIZATION-ANCHORING DOMAIN; COMPND 6 SYNONYM: RIIA(1-44); COMPND 7 EC: 2.7.1.37; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIIA(1-44); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-16B KEYWDS REGULATORY SUBUNIT, ANCHORING, FOUR-HELIX BUNDLE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 17 AUTHOR M.G.NEWLON,M.ROY,D.MORIKIS,Z.E.HAUSKEN,V.COGHLAN,J.D.SCOTT, AUTHOR 2 P.A.JENNINGS REVDAT 5 27-DEC-23 1R2A 1 REMARK REVDAT 4 02-MAR-22 1R2A 1 REMARK SEQADV REVDAT 3 24-FEB-09 1R2A 1 VERSN REVDAT 2 29-DEC-99 1R2A 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 16-DEC-98 1R2A 0 JRNL AUTH M.G.NEWLON,M.ROY,D.MORIKIS,Z.E.HAUSKEN,V.COGHLAN,J.D.SCOTT, JRNL AUTH 2 P.A.JENNINGS JRNL TITL THE MOLECULAR BASIS FOR PROTEIN KINASE A ANCHORING REVEALED JRNL TITL 2 BY SOLUTION NMR. JRNL REF NAT.STRUCT.BIOL. V. 6 222 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10074940 JRNL DOI 10.1038/6663 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NILGES REMARK 1 TITL A CALCULATION STRATEGY FOR THE STRUCTURE DETERMINATION OF REMARK 1 TITL 2 SYMMETRIC DIMERS BY 1H NMR REMARK 1 REF PROTEINS V. 17 297 1993 REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATIONS ABOVE REMARK 4 REMARK 4 1R2A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000230. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 0.012 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D NOESY-HSQC; 3D TOCSY-HMQC; REMARK 210 CBCA(CO)NH; HNCA; HN(CO)CA; 13C REMARK 210 FILTERED NOESY; HNHA; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY-SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 49 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 17 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 10 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED RIIALPHA(1-44). 13C FILTERED REMARK 210 EXPERIMENTS ON A 50% 13C,15N LABELED, 50% UNLABELED RIIALPHA(1- REMARK 210 44) SAMPLE WERE USED TO OBTAIN INTERMOLECULAR CONTACTS OF THE REMARK 210 HOMODIMER. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 6 50.27 -152.02 REMARK 500 1 ARG A 24 -62.59 -92.49 REMARK 500 1 ALA A 44 -65.32 -92.98 REMARK 500 1 ARG A 45 106.39 -47.79 REMARK 500 1 GLN B 6 50.34 -152.04 REMARK 500 1 ARG B 24 -62.41 -92.65 REMARK 500 1 ALA B 44 -65.41 -92.73 REMARK 500 1 ARG B 45 106.34 -47.74 REMARK 500 2 HIS A 4 -50.57 -134.65 REMARK 500 2 GLN A 6 38.65 -141.13 REMARK 500 2 ALA A 44 -71.86 -60.74 REMARK 500 2 HIS B 4 -50.72 -134.75 REMARK 500 2 GLN B 6 38.59 -140.90 REMARK 500 2 ALA B 44 -71.81 -61.00 REMARK 500 3 MET A 2 76.81 -159.42 REMARK 500 3 ILE A 7 58.32 -146.83 REMARK 500 3 ARG A 45 160.58 -48.96 REMARK 500 3 MET B 2 76.72 -159.45 REMARK 500 3 ILE B 7 58.54 -146.84 REMARK 500 3 ARG B 45 160.66 -49.10 REMARK 500 4 MET A 2 34.23 -152.40 REMARK 500 4 ILE A 5 60.10 -100.26 REMARK 500 4 GLN A 26 71.30 51.97 REMARK 500 4 MET B 2 34.13 -152.33 REMARK 500 4 ILE B 5 59.97 -100.22 REMARK 500 4 GLN B 26 71.15 52.21 REMARK 500 5 MET A 2 -43.89 -134.66 REMARK 500 5 ILE A 5 62.36 -112.46 REMARK 500 5 GLN A 6 41.14 -109.23 REMARK 500 5 GLN A 26 77.42 53.80 REMARK 500 5 ALA A 44 -63.21 -90.09 REMARK 500 5 MET B 2 -43.98 -134.88 REMARK 500 5 ILE B 5 62.25 -112.56 REMARK 500 5 GLN B 6 41.12 -109.17 REMARK 500 5 GLN B 26 77.44 53.89 REMARK 500 6 ARG A 45 -81.95 -50.88 REMARK 500 6 ARG B 45 -81.97 -51.00 REMARK 500 7 HIS A 4 37.20 -155.85 REMARK 500 7 GLN A 6 53.48 -156.33 REMARK 500 7 PRO A 9 -169.63 -73.84 REMARK 500 7 GLN A 26 96.09 -39.35 REMARK 500 7 HIS B 4 36.98 -155.89 REMARK 500 7 GLN B 6 53.43 -156.35 REMARK 500 7 PRO B 9 -169.53 -73.87 REMARK 500 7 GLN B 26 95.98 -39.25 REMARK 500 8 MET A 2 20.54 -141.93 REMARK 500 8 MET B 2 20.54 -141.74 REMARK 500 9 ARG A 45 -71.44 -49.73 REMARK 500 9 ARG B 45 -71.22 -49.97 REMARK 500 10 MET A 2 76.73 53.11 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 24 0.22 SIDE CHAIN REMARK 500 1 ARG A 40 0.31 SIDE CHAIN REMARK 500 1 ARG A 42 0.22 SIDE CHAIN REMARK 500 1 ARG A 45 0.32 SIDE CHAIN REMARK 500 1 ARG A 46 0.26 SIDE CHAIN REMARK 500 1 ARG B 24 0.22 SIDE CHAIN REMARK 500 1 ARG B 40 0.31 SIDE CHAIN REMARK 500 1 ARG B 42 0.22 SIDE CHAIN REMARK 500 1 ARG B 45 0.32 SIDE CHAIN REMARK 500 1 ARG B 46 0.26 SIDE CHAIN REMARK 500 2 ARG A 24 0.23 SIDE CHAIN REMARK 500 2 ARG A 40 0.24 SIDE CHAIN REMARK 500 2 ARG A 42 0.30 SIDE CHAIN REMARK 500 2 ARG A 45 0.24 SIDE CHAIN REMARK 500 2 ARG A 46 0.31 SIDE CHAIN REMARK 500 2 ARG B 24 0.23 SIDE CHAIN REMARK 500 2 ARG B 40 0.24 SIDE CHAIN REMARK 500 2 ARG B 42 0.30 SIDE CHAIN REMARK 500 2 ARG B 45 0.25 SIDE CHAIN REMARK 500 2 ARG B 46 0.31 SIDE CHAIN REMARK 500 3 ARG A 24 0.31 SIDE CHAIN REMARK 500 3 ARG A 40 0.20 SIDE CHAIN REMARK 500 3 ARG A 42 0.22 SIDE CHAIN REMARK 500 3 ARG A 45 0.24 SIDE CHAIN REMARK 500 3 ARG A 46 0.32 SIDE CHAIN REMARK 500 3 ARG B 24 0.31 SIDE CHAIN REMARK 500 3 ARG B 40 0.20 SIDE CHAIN REMARK 500 3 ARG B 42 0.22 SIDE CHAIN REMARK 500 3 ARG B 45 0.24 SIDE CHAIN REMARK 500 3 ARG B 46 0.32 SIDE CHAIN REMARK 500 4 ARG A 24 0.26 SIDE CHAIN REMARK 500 4 ARG A 40 0.31 SIDE CHAIN REMARK 500 4 ARG A 42 0.26 SIDE CHAIN REMARK 500 4 ARG A 45 0.31 SIDE CHAIN REMARK 500 4 ARG A 46 0.26 SIDE CHAIN REMARK 500 4 ARG B 24 0.26 SIDE CHAIN REMARK 500 4 ARG B 40 0.31 SIDE CHAIN REMARK 500 4 ARG B 42 0.26 SIDE CHAIN REMARK 500 4 ARG B 45 0.31 SIDE CHAIN REMARK 500 4 ARG B 46 0.26 SIDE CHAIN REMARK 500 5 ARG A 24 0.32 SIDE CHAIN REMARK 500 5 ARG A 40 0.23 SIDE CHAIN REMARK 500 5 ARG A 42 0.32 SIDE CHAIN REMARK 500 5 ARG A 45 0.24 SIDE CHAIN REMARK 500 5 ARG A 46 0.31 SIDE CHAIN REMARK 500 5 ARG B 24 0.32 SIDE CHAIN REMARK 500 5 ARG B 40 0.23 SIDE CHAIN REMARK 500 5 ARG B 42 0.32 SIDE CHAIN REMARK 500 5 ARG B 45 0.23 SIDE CHAIN REMARK 500 5 ARG B 46 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 170 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1R2A A 2 46 UNP P12367 KAP2_MOUSE 1 44 DBREF 1R2A B 2 46 UNP P12367 KAP2_MOUSE 1 44 SEQADV 1R2A HIS A 1 UNP P12367 CLONING ARTIFACT SEQADV 1R2A GLY A 3 UNP P12367 SER 2 CLONING ARTIFACT SEQADV 1R2A LEU A 23 UNP P12367 INSERTION SEQADV 1R2A ARG A 24 UNP P12367 GLY 22 VARIANT SEQADV 1R2A HIS B 1 UNP P12367 CLONING ARTIFACT SEQADV 1R2A GLY B 3 UNP P12367 SER 2 CLONING ARTIFACT SEQADV 1R2A LEU B 23 UNP P12367 INSERTION SEQADV 1R2A ARG B 24 UNP P12367 GLY 22 VARIANT SEQRES 1 A 46 HIS MET GLY HIS ILE GLN ILE PRO PRO GLY LEU THR GLU SEQRES 2 A 46 LEU LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN SEQRES 3 A 46 PRO PRO ASP LEU VAL ASP PHE ALA VAL GLU TYR PHE THR SEQRES 4 A 46 ARG LEU ARG GLU ALA ARG ARG SEQRES 1 B 46 HIS MET GLY HIS ILE GLN ILE PRO PRO GLY LEU THR GLU SEQRES 2 B 46 LEU LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN SEQRES 3 B 46 PRO PRO ASP LEU VAL ASP PHE ALA VAL GLU TYR PHE THR SEQRES 4 B 46 ARG LEU ARG GLU ALA ARG ARG HELIX 1 1 LEU A 11 ARG A 24 1 14 HELIX 2 2 LEU A 30 ALA A 44 1 15 HELIX 3 3 LEU B 11 ARG B 24 1 14 HELIX 4 4 LEU B 30 ALA B 44 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1