data_1R2W # _entry.id 1R2W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1R2W pdb_00001r2w 10.2210/pdb1r2w/pdb RCSB RCSB020369 ? ? WWPDB D_1000020369 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-04 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' em_image_scans 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R2W _pdbx_database_status.recvd_initial_deposition_date 2003-09-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1FFK 'Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution' unspecified PDB 1QZB 'Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state' unspecified PDB 1QZC ;Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome ; unspecified PDB 1QZD 'EF-Tu.kirromycin coordinates fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome' unspecified PDB 1R2X 'Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome' unspecified EMDB EMD-1056 . 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valle, M.' 1 'Zavialov, A.' 2 'Li, W.' 3 'Stagg, S.M.' 4 'Sengupta, J.' 5 'Nielsen, R.C.' 6 'Nissen, P.' 7 'Harvey, S.C.' 8 'Ehrenberg, M.' 9 'Frank, J.' 10 # _citation.id primary _citation.title 'Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 10 _citation.page_first 899 _citation.page_last 906 _citation.year 2003 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14566331 _citation.pdbx_database_id_DOI 10.1038/nsb1003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valle, M.' 1 ? primary 'Zavialov, A.' 2 ? primary 'Li, W.' 3 ? primary 'Stagg, S.M.' 4 ? primary 'Sengupta, J.' 5 ? primary 'Nielsen, R.C.' 6 ? primary 'Nissen, P.' 7 ? primary 'Harvey, S.C.' 8 ? primary 'Ehrenberg, M.' 9 ? primary 'Frank, J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '58nts of 23S rRNA' 18693.145 1 ? ? ? ? 2 polymer nat '50S ribosomal protein L11' 15109.841 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC C ? 2 'polypeptide(L)' no no ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTEPPASFLLK KAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTEPPASFLLK KAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 G n 1 10 U n 1 11 U n 1 12 G n 1 13 G n 1 14 C n 1 15 U n 1 16 U n 1 17 A n 1 18 G n 1 19 A n 1 20 A n 1 21 G n 1 22 C n 1 23 A n 1 24 G n 1 25 C n 1 26 C n 1 27 A n 1 28 U n 1 29 C n 1 30 A n 1 31 U n 1 32 U n 1 33 U n 1 34 A n 1 35 A n 1 36 A n 1 37 G n 1 38 A n 1 39 G n 1 40 U n 1 41 G n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 A n 1 47 C n 1 48 A n 1 49 G n 1 50 C n 1 51 U n 1 52 C n 1 53 A n 1 54 C n 1 55 C n 1 56 A n 1 57 G n 1 58 C n 2 1 ALA n 2 2 LYS n 2 3 LYS n 2 4 VAL n 2 5 ALA n 2 6 ALA n 2 7 GLN n 2 8 ILE n 2 9 LYS n 2 10 LEU n 2 11 GLN n 2 12 LEU n 2 13 PRO n 2 14 ALA n 2 15 GLY n 2 16 LYS n 2 17 ALA n 2 18 THR n 2 19 PRO n 2 20 ALA n 2 21 PRO n 2 22 PRO n 2 23 VAL n 2 24 GLY n 2 25 PRO n 2 26 ALA n 2 27 LEU n 2 28 GLY n 2 29 GLN n 2 30 HIS n 2 31 GLY n 2 32 VAL n 2 33 ASN n 2 34 ILE n 2 35 MET n 2 36 GLU n 2 37 PHE n 2 38 CYS n 2 39 LYS n 2 40 ARG n 2 41 PHE n 2 42 ASN n 2 43 ALA n 2 44 GLU n 2 45 THR n 2 46 ALA n 2 47 ASP n 2 48 LYS n 2 49 ALA n 2 50 GLY n 2 51 MET n 2 52 ILE n 2 53 LEU n 2 54 PRO n 2 55 VAL n 2 56 VAL n 2 57 ILE n 2 58 THR n 2 59 VAL n 2 60 TYR n 2 61 GLU n 2 62 ASP n 2 63 LYS n 2 64 SER n 2 65 PHE n 2 66 THR n 2 67 PHE n 2 68 ILE n 2 69 ILE n 2 70 LYS n 2 71 THR n 2 72 GLU n 2 73 PRO n 2 74 PRO n 2 75 ALA n 2 76 SER n 2 77 PHE n 2 78 LEU n 2 79 LEU n 2 80 LYS n 2 81 LYS n 2 82 ALA n 2 83 ALA n 2 84 GLY n 2 85 ILE n 2 86 GLU n 2 87 LYS n 2 88 GLY n 2 89 SER n 2 90 SER n 2 91 GLU n 2 92 PRO n 2 93 LYS n 2 94 ARG n 2 95 LYS n 2 96 ILE n 2 97 VAL n 2 98 GLY n 2 99 LYS n 2 100 VAL n 2 101 THR n 2 102 ARG n 2 103 LYS n 2 104 GLN n 2 105 ILE n 2 106 GLU n 2 107 GLU n 2 108 ILE n 2 109 ALA n 2 110 LYS n 2 111 THR n 2 112 LYS n 2 113 MET n 2 114 PRO n 2 115 ASP n 2 116 LEU n 2 117 ASN n 2 118 ALA n 2 119 ASN n 2 120 SER n 2 121 LEU n 2 122 GLU n 2 123 ALA n 2 124 ALA n 2 125 MET n 2 126 LYS n 2 127 ILE n 2 128 ILE n 2 129 GLU n 2 130 GLY n 2 131 THR n 2 132 ALA n 2 133 LYS n 2 134 SER n 2 135 MET n 2 136 GLY n 2 137 ILE n 2 138 GLU n 2 139 VAL n 2 140 VAL n 2 141 ASP n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Thermotoga maritima' _entity_src_nat.pdbx_ncbi_taxonomy_id 2336 _entity_src_nat.genus Thermotoga _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 0 ? ? ? C . n A 1 2 C 2 1 1 C C C . n A 1 3 U 3 2 2 U U C . n A 1 4 G 4 3 3 G G C . n A 1 5 G 5 4 4 G G C . n A 1 6 G 6 5 5 G G C . n A 1 7 A 7 6 6 A A C . n A 1 8 U 8 7 7 U U C . n A 1 9 G 9 8 8 G G C . n A 1 10 U 10 9 9 U U C . n A 1 11 U 11 10 10 U U C . n A 1 12 G 12 11 11 G G C . n A 1 13 G 13 12 12 G G C . n A 1 14 C 14 13 13 C C C . n A 1 15 U 15 14 14 U U C . n A 1 16 U 16 15 15 U U C . n A 1 17 A 17 16 16 A A C . n A 1 18 G 18 17 17 G G C . n A 1 19 A 19 18 18 A A C . n A 1 20 A 20 19 19 A A C . n A 1 21 G 21 20 20 G G C . n A 1 22 C 22 21 21 C C C . n A 1 23 A 23 22 22 A A C . n A 1 24 G 24 23 23 G G C . n A 1 25 C 25 24 24 C C C . n A 1 26 C 26 25 25 C C C . n A 1 27 A 27 26 26 A A C . n A 1 28 U 28 27 27 U U C . n A 1 29 C 29 28 28 C C C . n A 1 30 A 30 29 29 A A C . n A 1 31 U 31 30 30 U U C . n A 1 32 U 32 31 31 U U C . n A 1 33 U 33 32 32 U U C . n A 1 34 A 34 33 33 A A C . n A 1 35 A 35 34 34 A A C . n A 1 36 A 36 35 35 A A C . n A 1 37 G 37 36 36 G G C . n A 1 38 A 38 37 37 A A C . n A 1 39 G 39 38 38 G G C . n A 1 40 U 40 39 39 U U C . n A 1 41 G 41 40 40 G G C . n A 1 42 C 42 41 41 C C C . n A 1 43 G 43 42 42 G G C . n A 1 44 U 44 43 43 U U C . n A 1 45 A 45 44 44 A A C . n A 1 46 A 46 45 45 A A C . n A 1 47 C 47 46 46 C C C . n A 1 48 A 48 47 47 A A C . n A 1 49 G 49 48 48 G G C . n A 1 50 C 50 49 49 C C C . n A 1 51 U 51 50 50 U U C . n A 1 52 C 52 51 51 C C C . n A 1 53 A 53 52 52 A A C . n A 1 54 C 54 53 53 C C C . n A 1 55 C 55 54 54 C C C . n A 1 56 A 56 55 55 A A C . n A 1 57 G 57 56 56 G G C . n A 1 58 C 58 57 57 C "C3'" C . n B 2 1 ALA 1 -5 ? ? ? A . n B 2 2 LYS 2 -4 ? ? ? A . n B 2 3 LYS 3 -3 ? ? ? A . n B 2 4 VAL 4 -2 ? ? ? A . n B 2 5 ALA 5 -1 ? ? ? A . n B 2 6 ALA 6 0 ? ? ? A . n B 2 7 GLN 7 1 1 GLN GLN A . n B 2 8 ILE 8 2 2 ILE ILE A . n B 2 9 LYS 9 3 3 LYS LYS A . n B 2 10 LEU 10 4 4 LEU LEU A . n B 2 11 GLN 11 5 5 GLN GLN A . n B 2 12 LEU 12 6 6 LEU LEU A . n B 2 13 PRO 13 7 7 PRO PRO A . n B 2 14 ALA 14 8 8 ALA ALA A . n B 2 15 GLY 15 9 9 GLY GLY A . n B 2 16 LYS 16 10 10 LYS LYS A . n B 2 17 ALA 17 11 11 ALA ALA A . n B 2 18 THR 18 12 12 THR THR A . n B 2 19 PRO 19 13 13 PRO PRO A . n B 2 20 ALA 20 14 14 ALA ALA A . n B 2 21 PRO 21 15 15 PRO PRO A . n B 2 22 PRO 22 16 16 PRO PRO A . n B 2 23 VAL 23 17 17 VAL VAL A . n B 2 24 GLY 24 18 18 GLY GLY A . n B 2 25 PRO 25 19 19 PRO PRO A . n B 2 26 ALA 26 20 20 ALA ALA A . n B 2 27 LEU 27 21 21 LEU LEU A . n B 2 28 GLY 28 22 22 GLY GLY A . n B 2 29 GLN 29 23 23 GLN GLN A . n B 2 30 HIS 30 24 24 HIS HIS A . n B 2 31 GLY 31 25 25 GLY GLY A . n B 2 32 VAL 32 26 26 VAL VAL A . n B 2 33 ASN 33 27 27 ASN ASN A . n B 2 34 ILE 34 28 28 ILE ILE A . n B 2 35 MET 35 29 29 MET MET A . n B 2 36 GLU 36 30 30 GLU GLU A . n B 2 37 PHE 37 31 31 PHE PHE A . n B 2 38 CYS 38 32 32 CYS CYS A . n B 2 39 LYS 39 33 33 LYS LYS A . n B 2 40 ARG 40 34 34 ARG ARG A . n B 2 41 PHE 41 35 35 PHE PHE A . n B 2 42 ASN 42 36 36 ASN ASN A . n B 2 43 ALA 43 37 37 ALA ALA A . n B 2 44 GLU 44 38 38 GLU GLU A . n B 2 45 THR 45 39 39 THR THR A . n B 2 46 ALA 46 40 40 ALA ALA A . n B 2 47 ASP 47 41 41 ASP ASP A . n B 2 48 LYS 48 42 42 LYS LYS A . n B 2 49 ALA 49 43 43 ALA ALA A . n B 2 50 GLY 50 44 44 GLY GLY A . n B 2 51 MET 51 45 45 MET MET A . n B 2 52 ILE 52 46 46 ILE ILE A . n B 2 53 LEU 53 47 47 LEU LEU A . n B 2 54 PRO 54 48 48 PRO PRO A . n B 2 55 VAL 55 49 49 VAL VAL A . n B 2 56 VAL 56 50 50 VAL VAL A . n B 2 57 ILE 57 51 51 ILE ILE A . n B 2 58 THR 58 52 52 THR THR A . n B 2 59 VAL 59 53 53 VAL VAL A . n B 2 60 TYR 60 54 54 TYR TYR A . n B 2 61 GLU 61 55 55 GLU GLU A . n B 2 62 ASP 62 56 56 ASP ASP A . n B 2 63 LYS 63 57 57 LYS LYS A . n B 2 64 SER 64 58 58 SER SER A . n B 2 65 PHE 65 59 59 PHE PHE A . n B 2 66 THR 66 60 60 THR THR A . n B 2 67 PHE 67 61 61 PHE PHE A . n B 2 68 ILE 68 62 62 ILE ILE A . n B 2 69 ILE 69 63 63 ILE ILE A . n B 2 70 LYS 70 64 64 LYS LYS A . n B 2 71 THR 71 65 65 THR THR A . n B 2 72 GLU 72 66 66 GLU PRO A . n B 2 73 PRO 73 67 67 PRO PRO A . n B 2 74 PRO 74 68 68 PRO PRO A . n B 2 75 ALA 75 69 69 ALA ALA A . n B 2 76 SER 76 70 70 SER SER A . n B 2 77 PHE 77 71 71 PHE PHE A . n B 2 78 LEU 78 72 72 LEU LEU A . n B 2 79 LEU 79 73 73 LEU LEU A . n B 2 80 LYS 80 74 74 LYS LYS A . n B 2 81 LYS 81 75 75 LYS LYS A . n B 2 82 ALA 82 76 76 ALA ALA A . n B 2 83 ALA 83 77 77 ALA ALA A . n B 2 84 GLY 84 78 78 GLY GLY A . n B 2 85 ILE 85 79 79 ILE ILE A . n B 2 86 GLU 86 80 80 GLU GLU A . n B 2 87 LYS 87 81 81 LYS LYS A . n B 2 88 GLY 88 82 82 GLY GLY A . n B 2 89 SER 89 83 83 SER SER A . n B 2 90 SER 90 84 84 SER SER A . n B 2 91 GLU 91 85 85 GLU GLU A . n B 2 92 PRO 92 86 86 PRO PRO A . n B 2 93 LYS 93 87 87 LYS LYS A . n B 2 94 ARG 94 88 88 ARG ARG A . n B 2 95 LYS 95 89 89 LYS LYS A . n B 2 96 ILE 96 90 90 ILE ILE A . n B 2 97 VAL 97 91 91 VAL VAL A . n B 2 98 GLY 98 92 92 GLY GLY A . n B 2 99 LYS 99 93 93 LYS LYS A . n B 2 100 VAL 100 94 94 VAL VAL A . n B 2 101 THR 101 95 95 THR THR A . n B 2 102 ARG 102 96 96 ARG ARG A . n B 2 103 LYS 103 97 97 LYS LYS A . n B 2 104 GLN 104 98 98 GLN GLN A . n B 2 105 ILE 105 99 99 ILE ILE A . n B 2 106 GLU 106 100 100 GLU GLU A . n B 2 107 GLU 107 101 101 GLU GLU A . n B 2 108 ILE 108 102 102 ILE ILE A . n B 2 109 ALA 109 103 103 ALA ALA A . n B 2 110 LYS 110 104 104 LYS LYS A . n B 2 111 THR 111 105 105 THR THR A . n B 2 112 LYS 112 106 106 LYS LYS A . n B 2 113 MET 113 107 107 MET MET A . n B 2 114 PRO 114 108 108 PRO PRO A . n B 2 115 ASP 115 109 109 ASP ASP A . n B 2 116 LEU 116 110 110 LEU LEU A . n B 2 117 ASN 117 111 111 ASN ASN A . n B 2 118 ALA 118 112 112 ALA ALA A . n B 2 119 ASN 119 113 113 ASN ASN A . n B 2 120 SER 120 114 114 SER SER A . n B 2 121 LEU 121 115 115 LEU LEU A . n B 2 122 GLU 122 116 116 GLU GLU A . n B 2 123 ALA 123 117 117 ALA ALA A . n B 2 124 ALA 124 118 118 ALA ALA A . n B 2 125 MET 125 119 119 MET MET A . n B 2 126 LYS 126 120 120 LYS LYS A . n B 2 127 ILE 127 121 121 ILE ILE A . n B 2 128 ILE 128 122 122 ILE ILE A . n B 2 129 GLU 129 123 123 GLU GLU A . n B 2 130 GLY 130 124 124 GLY GLY A . n B 2 131 THR 131 125 125 THR THR A . n B 2 132 ALA 132 126 126 ALA ALA A . n B 2 133 LYS 133 127 127 LYS LYS A . n B 2 134 SER 134 128 128 SER SER A . n B 2 135 MET 135 129 129 MET MET A . n B 2 136 GLY 136 130 130 GLY GLY A . n B 2 137 ILE 137 131 131 ILE ILE A . n B 2 138 GLU 138 132 132 GLU GLU A . n B 2 139 VAL 139 133 133 VAL VAL A . n B 2 140 VAL 140 134 134 VAL VAL A . n B 2 141 ASP 141 135 ? ? ? A . n # _cell.entry_id 1R2W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 1 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1R2W _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 1 _symmetry.cell_setting ? # _exptl.entry_id 1R2W _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 134 _refine_hist.pdbx_number_atoms_nucleic_acid 57 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 191 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1R2W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1R2W _struct.title 'Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of the 70S ribosome' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R2W _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'rna, ribosomal protein, RNA BINDING PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RL11_THEMA P29395 2 ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; 1 ? 2 PDB 1R2W 1R2W 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1R2W A 1 ? 141 ? P29395 1 ? 140 ? -5 135 2 2 1R2W C 1 ? 58 ? 1R2W 0 ? 57 ? 0 57 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1R2W _struct_ref_seq_dif.mon_id GLU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 72 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P29395 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details insertion _struct_ref_seq_dif.pdbx_auth_seq_num 66 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CA _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 66 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 CA _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PRO _pdbx_validate_close_contact.auth_seq_id_2 68 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.50 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE PROTEIN STRUCTURE CONTAINS CA ATOMS and THE RNA STRUCTURE CONTAINS P ATOMS ONLY ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 1R2W _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--manual using O' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 1R2W _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 52181 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Reference-guided alignment' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 2.82 _em_3d_reconstruction.resolution 9 _em_3d_reconstruction.magnification_calibration TMV _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name 'Polymix buffer' _em_buffer.details 'Polymix buffer' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 '70S ribosome' RIBOSOME 0 ? ? ? 2 '50S ribosomal protein L11' ? 1 ? 'structural constituent of ribosome' ? 3 'A site tRNA' ? 1 ? ? ? # _em_imaging.entry_id 1R2W _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature 93 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 2000. _em_imaging.nominal_defocus_max 4000. _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs ? _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 49640 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Quantifoil holley carbon coated grids' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 1R2W _em_vitrification.id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Rapid freezing in liquid ethane' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 1R2W _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 1R2W _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C G 0 ? A G 1 2 1 Y 1 A ALA -5 ? B ALA 1 3 1 Y 1 A LYS -4 ? B LYS 2 4 1 Y 1 A LYS -3 ? B LYS 3 5 1 Y 1 A VAL -2 ? B VAL 4 6 1 Y 1 A ALA -1 ? B ALA 5 7 1 Y 1 A ALA 0 ? B ALA 6 8 1 Y 1 A ASP 135 ? B ASP 141 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TYR N N N N 428 TYR CA C N S 429 TYR C C N N 430 TYR O O N N 431 TYR CB C N N 432 TYR CG C Y N 433 TYR CD1 C Y N 434 TYR CD2 C Y N 435 TYR CE1 C Y N 436 TYR CE2 C Y N 437 TYR CZ C Y N 438 TYR OH O N N 439 TYR OXT O N N 440 TYR H H N N 441 TYR H2 H N N 442 TYR HA H N N 443 TYR HB2 H N N 444 TYR HB3 H N N 445 TYR HD1 H N N 446 TYR HD2 H N N 447 TYR HE1 H N N 448 TYR HE2 H N N 449 TYR HH H N N 450 TYR HXT H N N 451 U OP3 O N N 452 U P P N N 453 U OP1 O N N 454 U OP2 O N N 455 U "O5'" O N N 456 U "C5'" C N N 457 U "C4'" C N R 458 U "O4'" O N N 459 U "C3'" C N S 460 U "O3'" O N N 461 U "C2'" C N R 462 U "O2'" O N N 463 U "C1'" C N R 464 U N1 N N N 465 U C2 C N N 466 U O2 O N N 467 U N3 N N N 468 U C4 C N N 469 U O4 O N N 470 U C5 C N N 471 U C6 C N N 472 U HOP3 H N N 473 U HOP2 H N N 474 U "H5'" H N N 475 U "H5''" H N N 476 U "H4'" H N N 477 U "H3'" H N N 478 U "HO3'" H N N 479 U "H2'" H N N 480 U "HO2'" H N N 481 U "H1'" H N N 482 U H3 H N N 483 U H5 H N N 484 U H6 H N N 485 VAL N N N N 486 VAL CA C N S 487 VAL C C N N 488 VAL O O N N 489 VAL CB C N N 490 VAL CG1 C N N 491 VAL CG2 C N N 492 VAL OXT O N N 493 VAL H H N N 494 VAL H2 H N N 495 VAL HA H N N 496 VAL HB H N N 497 VAL HG11 H N N 498 VAL HG12 H N N 499 VAL HG13 H N N 500 VAL HG21 H N N 501 VAL HG22 H N N 502 VAL HG23 H N N 503 VAL HXT H N N 504 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TYR N CA sing N N 419 TYR N H sing N N 420 TYR N H2 sing N N 421 TYR CA C sing N N 422 TYR CA CB sing N N 423 TYR CA HA sing N N 424 TYR C O doub N N 425 TYR C OXT sing N N 426 TYR CB CG sing N N 427 TYR CB HB2 sing N N 428 TYR CB HB3 sing N N 429 TYR CG CD1 doub Y N 430 TYR CG CD2 sing Y N 431 TYR CD1 CE1 sing Y N 432 TYR CD1 HD1 sing N N 433 TYR CD2 CE2 doub Y N 434 TYR CD2 HD2 sing N N 435 TYR CE1 CZ doub Y N 436 TYR CE1 HE1 sing N N 437 TYR CE2 CZ sing Y N 438 TYR CE2 HE2 sing N N 439 TYR CZ OH sing N N 440 TYR OH HH sing N N 441 TYR OXT HXT sing N N 442 U OP3 P sing N N 443 U OP3 HOP3 sing N N 444 U P OP1 doub N N 445 U P OP2 sing N N 446 U P "O5'" sing N N 447 U OP2 HOP2 sing N N 448 U "O5'" "C5'" sing N N 449 U "C5'" "C4'" sing N N 450 U "C5'" "H5'" sing N N 451 U "C5'" "H5''" sing N N 452 U "C4'" "O4'" sing N N 453 U "C4'" "C3'" sing N N 454 U "C4'" "H4'" sing N N 455 U "O4'" "C1'" sing N N 456 U "C3'" "O3'" sing N N 457 U "C3'" "C2'" sing N N 458 U "C3'" "H3'" sing N N 459 U "O3'" "HO3'" sing N N 460 U "C2'" "O2'" sing N N 461 U "C2'" "C1'" sing N N 462 U "C2'" "H2'" sing N N 463 U "O2'" "HO2'" sing N N 464 U "C1'" N1 sing N N 465 U "C1'" "H1'" sing N N 466 U N1 C2 sing N N 467 U N1 C6 sing N N 468 U C2 O2 doub N N 469 U C2 N3 sing N N 470 U N3 C4 sing N N 471 U N3 H3 sing N N 472 U C4 O4 doub N N 473 U C4 C5 sing N N 474 U C5 C6 doub N N 475 U C5 H5 sing N N 476 U C6 H6 sing N N 477 VAL N CA sing N N 478 VAL N H sing N N 479 VAL N H2 sing N N 480 VAL CA C sing N N 481 VAL CA CB sing N N 482 VAL CA HA sing N N 483 VAL C O doub N N 484 VAL C OXT sing N N 485 VAL CB CG1 sing N N 486 VAL CB CG2 sing N N 487 VAL CB HB sing N N 488 VAL CG1 HG11 sing N N 489 VAL CG1 HG12 sing N N 490 VAL CG1 HG13 sing N N 491 VAL CG2 HG21 sing N N 492 VAL CG2 HG22 sing N N 493 VAL CG2 HG23 sing N N 494 VAL OXT HXT sing N N 495 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 200 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 32 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'P ATOMS ONLY' B 'CA ATOMS ONLY' # _atom_sites.entry_id 1R2W _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_