data_1R3O # _entry.id 1R3O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1R3O pdb_00001r3o 10.2210/pdb1r3o/pdb NDB UR0036 ? ? RCSB RCSB020397 ? ? WWPDB D_1000020397 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R3O _pdbx_database_status.recvd_initial_deposition_date 2003-10-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vallazza, M.' 1 'Perbandt, M.' 2 'Klussmann, S.' 3 'Rypniewski, W.' 4 'Erdmann, V.A.' 5 'Betzel, C.' 6 # _citation.id primary _citation.title 'First look at RNA in L-configuration.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 60 _citation.page_first 1 _citation.page_last 7 _citation.year 2004 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14684885 _citation.pdbx_database_id_DOI 10.1107/S0907444903027690 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vallazza, M.' 1 ? primary 'Perbandt, M.' 2 ? primary 'Klussmann, S.' 3 ? primary 'Rypniewski, W.' 4 ? primary 'Einspahr, H.M.' 5 ? primary 'Erdmann, V.A.' 6 ? primary 'Betzel, C.h.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn L-RNA 2597.601 2 ? ? ? ? 2 polymer syn L-RNA 2517.553 2 ? ? ? ? 3 water nat water 18.015 129 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(0C)(0U)(0G)(0G)(0G)(0C)(0G)(0G)' CUGGGCGG A,C ? 2 polyribonucleotide no yes '(0C)(0C)(0G)(0C)(0C)(0U)(0G)(0G)' CCGCCUGG B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 0C n 1 2 0U n 1 3 0G n 1 4 0G n 1 5 0G n 1 6 0C n 1 7 0G n 1 8 0G n 2 1 0C n 2 2 0C n 2 3 0G n 2 4 0C n 2 5 0C n 2 6 0U n 2 7 0G n 2 8 0G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0C 'L-RNA linking' . "L-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 0G 'L-RNA linking' . "L-GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 0U 'L-RNA linking' . "L-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 0C 1 79 79 0C C A . n A 1 2 0U 2 80 80 0U U A . n A 1 3 0G 3 81 81 0G G A . n A 1 4 0G 4 82 82 0G G A . n A 1 5 0G 5 83 83 0G G A . n A 1 6 0C 6 84 84 0C C A . n A 1 7 0G 7 85 85 0G G A . n A 1 8 0G 8 86 86 0G G A . n B 2 1 0C 1 90 90 0C C B . n B 2 2 0C 2 91 91 0C C B . n B 2 3 0G 3 92 92 0G G B . n B 2 4 0C 4 93 93 0C C B . n B 2 5 0C 5 94 94 0C C B . n B 2 6 0U 6 95 95 0U U B . n B 2 7 0G 7 96 96 0G G B . n B 2 8 0G 8 97 97 0G G B . n C 1 1 0C 1 79 79 0C C C . n C 1 2 0U 2 80 80 0U U C . n C 1 3 0G 3 81 81 0G G C . n C 1 4 0G 4 82 82 0G G C . n C 1 5 0G 5 83 83 0G G C . n C 1 6 0C 6 84 84 0C C C . n C 1 7 0G 7 85 85 0G G C . n C 1 8 0G 8 86 86 0G G C . n D 2 1 0C 1 90 90 0C C D . n D 2 2 0C 2 91 91 0C C D . n D 2 3 0G 3 92 92 0G G D . n D 2 4 0C 4 93 93 0C C D . n D 2 5 0C 5 94 94 0C C D . n D 2 6 0U 6 95 95 0U U D . n D 2 7 0G 7 96 96 0G G D . n D 2 8 0G 8 97 97 0G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 2 2 HOH HOH A . E 3 HOH 2 6 6 HOH HOH A . E 3 HOH 3 7 7 HOH HOH A . E 3 HOH 4 8 8 HOH HOH A . E 3 HOH 5 10 10 HOH HOH A . E 3 HOH 6 11 11 HOH HOH A . E 3 HOH 7 12 12 HOH HOH A . E 3 HOH 8 14 14 HOH HOH A . E 3 HOH 9 16 16 HOH HOH A . E 3 HOH 10 18 18 HOH HOH A . E 3 HOH 11 19 19 HOH HOH A . E 3 HOH 12 20 20 HOH HOH A . E 3 HOH 13 21 21 HOH HOH A . E 3 HOH 14 22 22 HOH HOH A . E 3 HOH 15 24 24 HOH HOH A . E 3 HOH 16 25 25 HOH HOH A . E 3 HOH 17 26 26 HOH HOH A . E 3 HOH 18 27 27 HOH HOH A . E 3 HOH 19 28 28 HOH HOH A . E 3 HOH 20 31 31 HOH HOH A . E 3 HOH 21 32 32 HOH HOH A . E 3 HOH 22 33 33 HOH HOH A . E 3 HOH 23 34 34 HOH HOH A . E 3 HOH 24 35 35 HOH HOH A . E 3 HOH 25 36 36 HOH HOH A . E 3 HOH 26 37 37 HOH HOH A . E 3 HOH 27 38 38 HOH HOH A . E 3 HOH 28 39 39 HOH HOH A . E 3 HOH 29 40 40 HOH HOH A . E 3 HOH 30 41 41 HOH HOH A . E 3 HOH 31 42 42 HOH HOH A . E 3 HOH 32 43 43 HOH HOH A . E 3 HOH 33 44 44 HOH HOH A . E 3 HOH 34 46 46 HOH HOH A . E 3 HOH 35 49 49 HOH HOH A . E 3 HOH 36 50 50 HOH HOH A . E 3 HOH 37 51 51 HOH HOH A . E 3 HOH 38 53 53 HOH HOH A . E 3 HOH 39 57 57 HOH HOH A . E 3 HOH 40 60 60 HOH HOH A . E 3 HOH 41 61 61 HOH HOH A . E 3 HOH 42 62 62 HOH HOH A . E 3 HOH 43 64 64 HOH HOH A . E 3 HOH 44 67 67 HOH HOH A . E 3 HOH 45 100 29 HOH HOH A . F 3 HOH 1 1 1 HOH HOH B . F 3 HOH 2 3 3 HOH HOH B . F 3 HOH 3 4 4 HOH HOH B . F 3 HOH 4 9 9 HOH HOH B . F 3 HOH 5 13 13 HOH HOH B . F 3 HOH 6 15 15 HOH HOH B . F 3 HOH 7 17 17 HOH HOH B . F 3 HOH 8 23 23 HOH HOH B . F 3 HOH 9 29 29 HOH HOH B . F 3 HOH 10 30 30 HOH HOH B . F 3 HOH 11 45 45 HOH HOH B . F 3 HOH 12 47 47 HOH HOH B . F 3 HOH 13 48 48 HOH HOH B . F 3 HOH 14 52 52 HOH HOH B . F 3 HOH 15 54 54 HOH HOH B . F 3 HOH 16 55 55 HOH HOH B . F 3 HOH 17 56 56 HOH HOH B . F 3 HOH 18 58 58 HOH HOH B . F 3 HOH 19 59 59 HOH HOH B . F 3 HOH 20 63 63 HOH HOH B . F 3 HOH 21 65 65 HOH HOH B . F 3 HOH 22 66 66 HOH HOH B . F 3 HOH 23 68 68 HOH HOH B . F 3 HOH 24 69 69 HOH HOH B . F 3 HOH 25 70 70 HOH HOH B . F 3 HOH 26 71 71 HOH HOH B . G 3 HOH 1 87 5 HOH HOH C . G 3 HOH 2 88 1 HOH HOH C . G 3 HOH 3 89 2 HOH HOH C . G 3 HOH 4 90 3 HOH HOH C . G 3 HOH 5 91 4 HOH HOH C . G 3 HOH 6 92 5 HOH HOH C . G 3 HOH 7 93 6 HOH HOH C . G 3 HOH 8 94 7 HOH HOH C . G 3 HOH 9 95 8 HOH HOH C . G 3 HOH 10 96 9 HOH HOH C . G 3 HOH 11 97 10 HOH HOH C . G 3 HOH 12 98 12 HOH HOH C . G 3 HOH 13 99 13 HOH HOH C . G 3 HOH 14 100 14 HOH HOH C . G 3 HOH 15 101 16 HOH HOH C . G 3 HOH 16 102 17 HOH HOH C . G 3 HOH 17 103 19 HOH HOH C . G 3 HOH 18 104 23 HOH HOH C . G 3 HOH 19 105 24 HOH HOH C . G 3 HOH 20 106 25 HOH HOH C . G 3 HOH 21 107 28 HOH HOH C . G 3 HOH 22 108 32 HOH HOH C . G 3 HOH 23 109 33 HOH HOH C . G 3 HOH 24 110 35 HOH HOH C . G 3 HOH 25 111 38 HOH HOH C . G 3 HOH 26 112 39 HOH HOH C . G 3 HOH 27 113 40 HOH HOH C . G 3 HOH 28 114 41 HOH HOH C . G 3 HOH 29 115 42 HOH HOH C . G 3 HOH 30 116 43 HOH HOH C . G 3 HOH 31 117 44 HOH HOH C . G 3 HOH 32 118 47 HOH HOH C . G 3 HOH 33 119 49 HOH HOH C . G 3 HOH 34 120 52 HOH HOH C . G 3 HOH 35 121 55 HOH HOH C . G 3 HOH 36 122 56 HOH HOH C . G 3 HOH 37 123 57 HOH HOH C . G 3 HOH 38 124 58 HOH HOH C . H 3 HOH 1 98 11 HOH HOH D . H 3 HOH 2 99 15 HOH HOH D . H 3 HOH 3 100 18 HOH HOH D . H 3 HOH 4 101 20 HOH HOH D . H 3 HOH 5 102 21 HOH HOH D . H 3 HOH 6 103 22 HOH HOH D . H 3 HOH 7 104 26 HOH HOH D . H 3 HOH 8 105 27 HOH HOH D . H 3 HOH 9 106 30 HOH HOH D . H 3 HOH 10 107 31 HOH HOH D . H 3 HOH 11 108 34 HOH HOH D . H 3 HOH 12 109 36 HOH HOH D . H 3 HOH 13 110 37 HOH HOH D . H 3 HOH 14 111 45 HOH HOH D . H 3 HOH 15 112 46 HOH HOH D . H 3 HOH 16 113 48 HOH HOH D . H 3 HOH 17 114 50 HOH HOH D . H 3 HOH 18 115 51 HOH HOH D . H 3 HOH 19 116 53 HOH HOH D . H 3 HOH 20 117 54 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 1R3O _cell.length_a 46.109 _cell.length_b 46.109 _cell.length_c 263.501 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1R3O _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1R3O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_percent_sol 53.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'pH 7.0, temperature 100K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1R3O _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 20.54 _reflns.number_all ? _reflns.number_obs 8385 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1R3O _refine.ls_number_reflns_obs 7996 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.54 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.24082 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23855 _refine.ls_R_factor_R_free 0.28563 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 388 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 32.841 _refine.aniso_B[1][1] 0.78 _refine.aniso_B[2][2] 0.78 _refine.aniso_B[3][3] -1.18 _refine.aniso_B[1][2] 0.39 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.189 _refine.pdbx_overall_ESU_R_Free 0.175 _refine.overall_SU_ML 0.127 _refine.overall_SU_B 4.399 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 676 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 805 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 20.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 752 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 260 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.766 3.000 ? 1168 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.343 3.000 ? 680 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 5.108 0.200 ? 128 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 336 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.098 0.200 ? 51 'X-RAY DIFFRACTION' ? r_nbd_other 0.211 0.200 ? 321 'X-RAY DIFFRACTION' ? r_nbtor_other 0.055 0.200 ? 138 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 59 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.053 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.120 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.220 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.746 3.000 ? 752 'X-RAY DIFFRACTION' ? r_scangle_it 2.330 4.500 ? 1168 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 511 _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.413 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1R3O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1R3O _struct.title 'Crystal structure of the first RNA duplex in L-conformation at 1.9A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R3O _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'L-RNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1R3O 1R3O ? ? ? 2 2 PDB 1R3O 1R3O ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1R3O A 1 ? 8 ? 1R3O 79 ? 86 ? 79 86 2 2 1R3O B 1 ? 8 ? 1R3O 90 ? 97 ? 90 97 3 1 1R3O C 1 ? 8 ? 1R3O 79 ? 86 ? 79 86 4 2 1R3O D 1 ? 8 ? 1R3O 90 ? 97 ? 90 97 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A 0C 1 "O3'" ? ? ? 1_555 A 0U 2 P ? ? A 0C 79 A 0U 80 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A 0U 2 "O3'" ? ? ? 1_555 A 0G 3 P ? ? A 0U 80 A 0G 81 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale3 covale both ? A 0G 3 "O3'" ? ? ? 1_555 A 0G 4 P ? ? A 0G 81 A 0G 82 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? A 0G 4 "O3'" ? ? ? 1_555 A 0G 5 P ? ? A 0G 82 A 0G 83 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale5 covale both ? A 0G 5 "O3'" ? ? ? 1_555 A 0C 6 P ? ? A 0G 83 A 0C 84 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale6 covale both ? A 0C 6 "O3'" ? ? ? 1_555 A 0G 7 P ? ? A 0C 84 A 0G 85 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale7 covale both ? A 0G 7 "O3'" ? ? ? 1_555 A 0G 8 P ? ? A 0G 85 A 0G 86 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale8 covale both ? B 0C 1 "O3'" ? ? ? 1_555 B 0C 2 P ? ? B 0C 90 B 0C 91 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale9 covale both ? B 0C 2 "O3'" ? ? ? 1_555 B 0G 3 P ? ? B 0C 91 B 0G 92 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale10 covale both ? B 0G 3 "O3'" ? ? ? 1_555 B 0C 4 P ? ? B 0G 92 B 0C 93 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale11 covale both ? B 0C 4 "O3'" ? ? ? 1_555 B 0C 5 P ? ? B 0C 93 B 0C 94 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale12 covale both ? B 0C 5 "O3'" ? ? ? 1_555 B 0U 6 P ? ? B 0C 94 B 0U 95 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale13 covale both ? B 0U 6 "O3'" ? ? ? 1_555 B 0G 7 P ? ? B 0U 95 B 0G 96 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale14 covale both ? B 0G 7 "O3'" ? ? ? 1_555 B 0G 8 P ? ? B 0G 96 B 0G 97 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale15 covale both ? C 0C 1 "O3'" ? ? ? 1_555 C 0U 2 P ? ? C 0C 79 C 0U 80 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale16 covale both ? C 0U 2 "O3'" ? ? ? 1_555 C 0G 3 P ? ? C 0U 80 C 0G 81 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale17 covale both ? C 0G 3 "O3'" ? ? ? 1_555 C 0G 4 P ? ? C 0G 81 C 0G 82 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale18 covale both ? C 0G 4 "O3'" ? ? ? 1_555 C 0G 5 P ? ? C 0G 82 C 0G 83 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale19 covale both ? C 0G 5 "O3'" ? ? ? 1_555 C 0C 6 P ? ? C 0G 83 C 0C 84 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale20 covale both ? C 0C 6 "O3'" ? ? ? 1_555 C 0G 7 P ? ? C 0C 84 C 0G 85 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale21 covale both ? C 0G 7 "O3'" ? ? ? 1_555 C 0G 8 P ? ? C 0G 85 C 0G 86 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale22 covale both ? D 0C 1 "O3'" ? ? ? 1_555 D 0C 2 P ? ? D 0C 90 D 0C 91 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale23 covale both ? D 0C 2 "O3'" ? ? ? 1_555 D 0G 3 P ? ? D 0C 91 D 0G 92 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale24 covale both ? D 0G 3 "O3'" ? ? ? 1_555 D 0C 4 P ? ? D 0G 92 D 0C 93 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale25 covale both ? D 0C 4 "O3'" ? ? ? 1_555 D 0C 5 P ? ? D 0C 93 D 0C 94 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale26 covale both ? D 0C 5 "O3'" ? ? ? 1_555 D 0U 6 P ? ? D 0C 94 D 0U 95 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale27 covale both ? D 0U 6 "O3'" ? ? ? 1_555 D 0G 7 P ? ? D 0U 95 D 0G 96 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale28 covale both ? D 0G 7 "O3'" ? ? ? 1_555 D 0G 8 P ? ? D 0G 96 D 0G 97 1_555 ? ? ? ? ? ? ? 1.588 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 0G _pdbx_validate_rmsd_bond.auth_seq_id_1 83 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 0G _pdbx_validate_rmsd_bond.auth_seq_id_2 83 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.372 _pdbx_validate_rmsd_bond.bond_target_value 1.323 _pdbx_validate_rmsd_bond.bond_deviation 0.049 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A 0G 85 ? ? "C1'" A 0G 85 ? ? N9 A 0G 85 ? ? 113.17 108.50 4.67 0.70 N 2 1 C2 C 0C 79 ? ? N3 C 0C 79 ? ? C4 C 0C 79 ? ? 123.70 119.90 3.80 0.50 N 3 1 N3 C 0C 79 ? ? C4 C 0C 79 ? ? C5 C 0C 79 ? ? 119.16 121.90 -2.74 0.40 N 4 1 "O4'" D 0G 96 ? ? "C1'" D 0G 96 ? ? N9 D 0G 96 ? ? 113.02 108.50 4.52 0.70 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 8 ? E HOH . 2 1 A HOH 12 ? E HOH . 3 1 A HOH 64 ? E HOH . 4 1 C HOH 92 ? G HOH . 5 1 C HOH 102 ? G HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0C OP3 O N N 1 0C P P N N 2 0C OP1 O N N 3 0C OP2 O N N 4 0C "O5'" O N N 5 0C "C5'" C N N 6 0C "C4'" C N S 7 0C "O4'" O N N 8 0C "C3'" C N R 9 0C "O3'" O N N 10 0C "C2'" C N S 11 0C "O2'" O N N 12 0C "C1'" C N S 13 0C N1 N N N 14 0C C2 C N N 15 0C O2 O N N 16 0C N3 N N N 17 0C C4 C N N 18 0C N4 N N N 19 0C C5 C N N 20 0C C6 C N N 21 0C HOP3 H N N 22 0C HOP2 H N N 23 0C "H5'" H N N 24 0C "H5''" H N N 25 0C "H4'" H N N 26 0C "H3'" H N N 27 0C "HO3'" H N N 28 0C "H2'" H N N 29 0C "HO2'" H N N 30 0C "H1'" H N N 31 0C H41 H N N 32 0C H42 H N N 33 0C H5 H N N 34 0C H6 H N N 35 0G OP3 O N N 36 0G P P N N 37 0G OP1 O N N 38 0G OP2 O N N 39 0G "O5'" O N N 40 0G "C5'" C N N 41 0G "C4'" C N S 42 0G "O4'" O N N 43 0G "C3'" C N R 44 0G "O3'" O N N 45 0G "C2'" C N S 46 0G "O2'" O N N 47 0G "C1'" C N S 48 0G N9 N Y N 49 0G C8 C Y N 50 0G N7 N Y N 51 0G C6 C N N 52 0G O6 O N N 53 0G C5 C Y N 54 0G N1 N N N 55 0G C2 C N N 56 0G N2 N N N 57 0G N3 N N N 58 0G C4 C Y N 59 0G HOP3 H N N 60 0G HOP2 H N N 61 0G "H5'" H N N 62 0G "H5''" H N N 63 0G "H4'" H N N 64 0G "H3'" H N N 65 0G "HO3'" H N N 66 0G "H2'" H N N 67 0G "HO2'" H N N 68 0G "H1'" H N N 69 0G H8 H N N 70 0G H1 H N N 71 0G H21 H N N 72 0G H22 H N N 73 0U OP3 O N N 74 0U P P N N 75 0U OP1 O N N 76 0U OP2 O N N 77 0U "O5'" O N N 78 0U "C5'" C N N 79 0U "C4'" C N S 80 0U "O4'" O N N 81 0U "C3'" C N R 82 0U "O3'" O N N 83 0U "C2'" C N S 84 0U "O2'" O N N 85 0U "C1'" C N S 86 0U N1 N N N 87 0U C2 C N N 88 0U O2 O N N 89 0U N3 N N N 90 0U C4 C N N 91 0U O4 O N N 92 0U C5 C N N 93 0U C6 C N N 94 0U HOP3 H N N 95 0U HOP2 H N N 96 0U "H5'" H N N 97 0U "H5''" H N N 98 0U "H4'" H N N 99 0U "H3'" H N N 100 0U "HO3'" H N N 101 0U "H2'" H N N 102 0U "HO2'" H N N 103 0U "H1'" H N N 104 0U H3 H N N 105 0U H5 H N N 106 0U H6 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0C OP3 P sing N N 1 0C OP3 HOP3 sing N N 2 0C P OP1 doub N N 3 0C P OP2 sing N N 4 0C P "O5'" sing N N 5 0C OP2 HOP2 sing N N 6 0C "O5'" "C5'" sing N N 7 0C "C5'" "C4'" sing N N 8 0C "C5'" "H5'" sing N N 9 0C "C5'" "H5''" sing N N 10 0C "C4'" "O4'" sing N N 11 0C "C4'" "C3'" sing N N 12 0C "C4'" "H4'" sing N N 13 0C "O4'" "C1'" sing N N 14 0C "C3'" "O3'" sing N N 15 0C "C3'" "C2'" sing N N 16 0C "C3'" "H3'" sing N N 17 0C "O3'" "HO3'" sing N N 18 0C "C2'" "O2'" sing N N 19 0C "C2'" "C1'" sing N N 20 0C "C2'" "H2'" sing N N 21 0C "O2'" "HO2'" sing N N 22 0C "C1'" N1 sing N N 23 0C "C1'" "H1'" sing N N 24 0C N1 C2 sing N N 25 0C N1 C6 sing N N 26 0C C2 O2 doub N N 27 0C C2 N3 sing N N 28 0C N3 C4 doub N N 29 0C C4 N4 sing N N 30 0C C4 C5 sing N N 31 0C N4 H41 sing N N 32 0C N4 H42 sing N N 33 0C C5 C6 doub N N 34 0C C5 H5 sing N N 35 0C C6 H6 sing N N 36 0G OP3 P sing N N 37 0G OP3 HOP3 sing N N 38 0G P OP1 doub N N 39 0G P OP2 sing N N 40 0G P "O5'" sing N N 41 0G OP2 HOP2 sing N N 42 0G "O5'" "C5'" sing N N 43 0G "C5'" "C4'" sing N N 44 0G "C5'" "H5'" sing N N 45 0G "C5'" "H5''" sing N N 46 0G "C4'" "O4'" sing N N 47 0G "C4'" "C3'" sing N N 48 0G "C4'" "H4'" sing N N 49 0G "O4'" "C1'" sing N N 50 0G "C3'" "O3'" sing N N 51 0G "C3'" "C2'" sing N N 52 0G "C3'" "H3'" sing N N 53 0G "O3'" "HO3'" sing N N 54 0G "C2'" "O2'" sing N N 55 0G "C2'" "C1'" sing N N 56 0G "C2'" "H2'" sing N N 57 0G "O2'" "HO2'" sing N N 58 0G "C1'" N9 sing N N 59 0G "C1'" "H1'" sing N N 60 0G N9 C8 sing Y N 61 0G N9 C4 sing Y N 62 0G C8 N7 doub Y N 63 0G C8 H8 sing N N 64 0G N7 C5 sing Y N 65 0G C6 O6 doub N N 66 0G C6 C5 sing N N 67 0G C6 N1 sing N N 68 0G C5 C4 doub Y N 69 0G N1 C2 sing N N 70 0G N1 H1 sing N N 71 0G C2 N2 sing N N 72 0G C2 N3 doub N N 73 0G N2 H21 sing N N 74 0G N2 H22 sing N N 75 0G N3 C4 sing N N 76 0U OP3 P sing N N 77 0U OP3 HOP3 sing N N 78 0U P OP1 doub N N 79 0U P OP2 sing N N 80 0U P "O5'" sing N N 81 0U OP2 HOP2 sing N N 82 0U "O5'" "C5'" sing N N 83 0U "C5'" "C4'" sing N N 84 0U "C5'" "H5'" sing N N 85 0U "C5'" "H5''" sing N N 86 0U "C4'" "O4'" sing N N 87 0U "C4'" "C3'" sing N N 88 0U "C4'" "H4'" sing N N 89 0U "O4'" "C1'" sing N N 90 0U "C3'" "O3'" sing N N 91 0U "C3'" "C2'" sing N N 92 0U "C3'" "H3'" sing N N 93 0U "O3'" "HO3'" sing N N 94 0U "C2'" "O2'" sing N N 95 0U "C2'" "C1'" sing N N 96 0U "C2'" "H2'" sing N N 97 0U "O2'" "HO2'" sing N N 98 0U "C1'" N1 sing N N 99 0U "C1'" "H1'" sing N N 100 0U N1 C2 sing N N 101 0U N1 C6 sing N N 102 0U C2 O2 doub N N 103 0U C2 N3 sing N N 104 0U N3 C4 sing N N 105 0U N3 H3 sing N N 106 0U C4 O4 doub N N 107 0U C4 C5 sing N N 108 0U C5 C6 doub N N 109 0U C5 H5 sing N N 110 0U C6 H6 sing N N 111 HOH O H1 sing N N 112 HOH O H2 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1R3O 'z-form double helix' 1R3O 'mismatched base pair' # _atom_sites.entry_id 1R3O _atom_sites.fract_transf_matrix[1][1] 0.021688 _atom_sites.fract_transf_matrix[1][2] 0.012521 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025043 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003795 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_