data_1R57 # _entry.id 1R57 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.317 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1R57 RCSB RCSB020451 WWPDB D_1000020451 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type BMRB 5845 'chemical shifts and coupling constants' unspecified TargetDB NESG-ZR31 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R57 _pdbx_database_status.recvd_initial_deposition_date 2003-10-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cort, J.R.' 1 'Acton, T.B.' 2 'Ma, L.' 3 'Xiao, R.B.' 4 'Montelione, G.T.' 5 'Kennedy, M.A.' 6 'Northeast Structural Genomics Consortium (NESG)' 7 # _citation.id primary _citation.title ;Structure of an acetyl-CoA binding protein from Staphylococcus aureus representing a novel subfamily of GCN5-related N-acetyltransferase-like proteins. ; _citation.journal_abbrev J.STRUCT.FUNCT.GENOM. _citation.journal_volume 9 _citation.page_first 7 _citation.page_last 20 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18709443 _citation.pdbx_database_id_DOI 10.1007/s10969-008-9041-z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cort, J.R.' 1 ? primary 'Ramelot, T.A.' 2 ? primary 'Murray, D.' 3 ? primary 'Acton, T.B.' 4 ? primary 'Ma, L.C.' 5 ? primary 'Xiao, R.' 6 ? primary 'Montelione, G.T.' 7 ? primary 'Kennedy, M.A.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'conserved hypothetical protein' _entity.formula_weight 11631.878 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.3.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSNLEIKQGENKFYIGDDENNALAEITYRFVDNNEINIDHTGVSDELGGQGVGKKLLKAVVEHARENNLKIIASCSFAKH MLEKEDSYQDVYLGLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSNLEIKQGENKFYIGDDENNALAEITYRFVDNNEINIDHTGVSDELGGQGVGKKLLKAVVEHARENNLKIIASCSFAKH MLEKEDSYQDVYLGLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NESG-ZR31 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ASN n 1 4 LEU n 1 5 GLU n 1 6 ILE n 1 7 LYS n 1 8 GLN n 1 9 GLY n 1 10 GLU n 1 11 ASN n 1 12 LYS n 1 13 PHE n 1 14 TYR n 1 15 ILE n 1 16 GLY n 1 17 ASP n 1 18 ASP n 1 19 GLU n 1 20 ASN n 1 21 ASN n 1 22 ALA n 1 23 LEU n 1 24 ALA n 1 25 GLU n 1 26 ILE n 1 27 THR n 1 28 TYR n 1 29 ARG n 1 30 PHE n 1 31 VAL n 1 32 ASP n 1 33 ASN n 1 34 ASN n 1 35 GLU n 1 36 ILE n 1 37 ASN n 1 38 ILE n 1 39 ASP n 1 40 HIS n 1 41 THR n 1 42 GLY n 1 43 VAL n 1 44 SER n 1 45 ASP n 1 46 GLU n 1 47 LEU n 1 48 GLY n 1 49 GLY n 1 50 GLN n 1 51 GLY n 1 52 VAL n 1 53 GLY n 1 54 LYS n 1 55 LYS n 1 56 LEU n 1 57 LEU n 1 58 LYS n 1 59 ALA n 1 60 VAL n 1 61 VAL n 1 62 GLU n 1 63 HIS n 1 64 ALA n 1 65 ARG n 1 66 GLU n 1 67 ASN n 1 68 ASN n 1 69 LEU n 1 70 LYS n 1 71 ILE n 1 72 ILE n 1 73 ALA n 1 74 SER n 1 75 CYS n 1 76 SER n 1 77 PHE n 1 78 ALA n 1 79 LYS n 1 80 HIS n 1 81 MET n 1 82 LEU n 1 83 GLU n 1 84 LYS n 1 85 GLU n 1 86 ASP n 1 87 SER n 1 88 TYR n 1 89 GLN n 1 90 ASP n 1 91 VAL n 1 92 TYR n 1 93 LEU n 1 94 GLY n 1 95 LEU n 1 96 GLU n 1 97 HIS n 1 98 HIS n 1 99 HIS n 1 100 HIS n 1 101 HIS n 1 102 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene 'SA2309 or MW2441 or SAV2521' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q99RB4_STAAM _struct_ref.pdbx_db_accession Q99RB4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNLEIKQGENKFYIGDDENNALAEITYRFVDNNEINIDHTGVSDELGGQGVGKKLVKAVVEHARENHLKIIASCSFAKH MLEKEDSYQDVYLG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1R57 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99RB4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1R57 LEU A 57 ? UNP Q99RB4 VAL 57 'see remark 999' 57 1 1 1R57 ASN A 68 ? UNP Q99RB4 HIS 68 'see remark 999' 68 2 1 1R57 LEU A 95 ? UNP Q99RB4 ? ? 'expression tag' 95 3 1 1R57 GLU A 96 ? UNP Q99RB4 ? ? 'expression tag' 96 4 1 1R57 HIS A 97 ? UNP Q99RB4 ? ? 'expression tag' 97 5 1 1R57 HIS A 98 ? UNP Q99RB4 ? ? 'expression tag' 98 6 1 1R57 HIS A 99 ? UNP Q99RB4 ? ? 'expression tag' 99 7 1 1R57 HIS A 100 ? UNP Q99RB4 ? ? 'expression tag' 100 8 1 1R57 HIS A 101 ? UNP Q99RB4 ? ? 'expression tag' 101 9 1 1R57 HIS A 102 ? UNP Q99RB4 ? ? 'expression tag' 102 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY 3 1 1 HNHA 4 3 1 HNHB 5 2 1 4D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength .115 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1 mM protein U-15N,13C; 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 95% H2O, 5% D2O' '95% H2O/5% D2O' 2 '1 mM protein U-15N,13C, 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 100% D2O' '100% D2O' 3 '0.4 mM protein U-15N,5%-13C; 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 95% H2O, 5% D2O' '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 600 2 ? Varian INOVA 750 # _pdbx_nmr_refine.entry_id 1R57 _pdbx_nmr_refine.method ;automated generation of initial distance restraint set distance geometry simulated annealing final refinement in explicit solvent ; _pdbx_nmr_refine.details ;Backbone and sidechain assignments were determined manually from triple-resonance NMR data. NOE distance restraints were derived automatically from peak-picked data with AutoStructure, then error-checked and corrected manually. The structure is based on 848 restraints: 710 meaningful distance restraints, 58 hydrogen bond restraints, and 80 dihedral angle restraints. There are 9.5 restraints per restrained residue. Phi dihedral restraints were derived from the HNHA experiment and TALOS. Psi dihedral restraints were derived from NOE ratios, secondary structure propensities evident in preliminary structures, alpha carbon chemical shifts, and TALOS. Residues 44-51 comprise a poorly-defined loop in this ensemble of structures. Residues 1-3 and 94-102 are unstructured termini. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1R57 _pdbx_nmr_details.text 'amide proton exchange was measured by dissolving a lyophilized protonated sample in D2O' # _pdbx_nmr_ensemble.entry_id 1R57 _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with fewest restraint violations and lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1R57 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'similarity to average, few violations, and low energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal AutoStructure 1.1 'data analysis' 'Huang, Tejero, Montelione' 1 CNS 1.1 'structure solution' 'Brunger, Schwieters, Kuszewski, Tjandra, Clore' 2 CNS 1.1 refinement Brunger 3 Felix 97 processing MSI 4 Sparky 3 'data analysis' 'Goddard, Kneller' 5 TALOS ? 'data analysis' 'Cornilescu, Delaglio, Bax' 6 # _exptl.entry_id 1R57 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1R57 _struct.title ;NMR Solution Structure of a GCN5-like putative N-acetyltransferase from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR31 ; _struct.pdbx_descriptor 'conserved hypothetical protein (E.C.2.3.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R57 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;GCN5, N-acetyltransferase, Structural genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, transferase ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 52 ? ASN A 68 ? VAL A 52 ASN A 68 1 ? 17 HELX_P HELX_P2 2 CYS A 75 ? GLU A 85 ? CYS A 75 GLU A 85 1 ? 11 HELX_P HELX_P3 3 ASP A 86 ? GLN A 89 ? ASP A 86 GLN A 89 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 7 ? GLY A 9 ? LYS A 7 GLY A 9 A 2 LYS A 12 ? GLY A 16 ? LYS A 12 GLY A 16 A 3 ALA A 22 ? PHE A 30 ? ALA A 22 PHE A 30 A 4 GLU A 35 ? VAL A 43 ? GLU A 35 VAL A 43 A 5 LYS A 70 ? ALA A 73 ? LYS A 70 ALA A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 9 ? N GLY A 9 O LYS A 12 ? O LYS A 12 A 2 3 N ILE A 15 ? N ILE A 15 O ALA A 24 ? O ALA A 24 A 3 4 N ARG A 29 ? N ARG A 29 O ASN A 37 ? O ASN A 37 A 4 5 N ILE A 36 ? N ILE A 36 O LYS A 70 ? O LYS A 70 # _database_PDB_matrix.entry_id 1R57 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1R57 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 HIS 97 97 97 HIS HIS A . n A 1 98 HIS 98 98 98 HIS HIS A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 HIS 101 101 101 HIS HIS A . n A 1 102 HIS 102 102 102 HIS HIS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-09 2 'Structure model' 1 1 2007-12-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn 2 4 'Structure model' diffrn_radiation 3 4 'Structure model' diffrn_radiation_wavelength 4 4 'Structure model' entity_poly 5 4 'Structure model' pdbx_database_related 6 4 'Structure model' pdbx_nmr_software 7 4 'Structure model' pdbx_struct_assembly 8 4 'Structure model' pdbx_struct_oper_list 9 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_poly.pdbx_target_identifier' 2 4 'Structure model' '_pdbx_database_related.db_id' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;sequence The protein that is the subject of this structure determination was cloned from Staphylococcus aureus subsp. Rosenbach. This strain has not been the subject of genome sequencing, however three other strains have been sequenced: MW2, Mu50,and N315. The amino acid residues at three positions in the protein structure described here differ from those at some or all of the same positions in the sequences from the three sequenced strains. These mutations, indicated by the notation XnY where the X is the residue in the sequenced strain, n is the position number, and Y is the residue in the structure described here, are as follows: Strain MW2: V57L and H68N Strains Mu50 and N315: H21N, V57L, and H68N ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 12 ? ? OE1 A GLU 25 ? ? 1.60 2 5 HZ1 A LYS 79 ? ? OE2 A GLU 83 ? ? 1.59 3 6 HD1 A HIS 80 ? ? OE1 A GLU 83 ? ? 1.59 4 7 HG A LEU 4 ? ? H A GLU 5 ? ? 1.33 5 8 OE1 A GLU 96 ? ? HD1 A HIS 98 ? ? 1.58 6 10 HH12 A ARG 65 ? ? HB2 A ASP 90 ? ? 1.25 7 15 HZ2 A LYS 12 ? ? OE2 A GLU 19 ? ? 1.58 8 15 O A ASP 39 ? ? HG A CYS 75 ? ? 1.60 9 16 HG1 A THR 27 ? ? HB3 A ASP 39 ? ? 1.31 10 16 OE2 A GLU 5 ? ? HZ1 A LYS 7 ? ? 1.54 11 17 HZ1 A LYS 54 ? ? OE1 A GLU 85 ? ? 1.58 12 18 HG1 A THR 27 ? ? HB3 A ASP 39 ? ? 1.25 13 20 HA A ASP 39 ? ? HB3 A SER 74 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 10 ? ? -64.26 94.11 2 1 ASN A 21 ? ? -88.10 31.72 3 1 ASP A 32 ? ? -125.45 -79.44 4 1 ASN A 33 ? ? -135.60 -86.66 5 1 LEU A 47 ? ? -140.94 19.17 6 2 SER A 2 ? ? -166.94 -77.45 7 2 LEU A 4 ? ? -85.35 39.25 8 2 ASP A 32 ? ? -151.82 78.26 9 2 ASN A 33 ? ? 49.17 -84.20 10 2 GLN A 50 ? ? 69.84 140.69 11 2 LEU A 93 ? ? -94.61 -138.21 12 2 HIS A 101 ? ? -157.36 -54.63 13 3 ASN A 21 ? ? -105.75 49.87 14 3 ASP A 32 ? ? -141.70 -159.53 15 4 LEU A 4 ? ? -92.76 30.07 16 4 ASN A 21 ? ? -108.20 49.60 17 4 ALA A 24 ? ? -154.95 89.37 18 4 ASP A 32 ? ? -119.62 -91.21 19 4 ASN A 33 ? ? -128.22 -77.92 20 4 ASP A 45 ? ? -76.03 33.26 21 4 LEU A 47 ? ? 73.34 -22.17 22 5 SER A 2 ? ? 70.30 156.64 23 5 ASN A 3 ? ? -140.04 12.75 24 5 LEU A 4 ? ? -121.48 -151.72 25 5 GLU A 5 ? ? 68.15 -178.34 26 5 ASP A 32 ? ? -133.37 -82.43 27 5 ASN A 33 ? ? -125.49 -64.90 28 5 ASN A 68 ? ? 59.10 71.16 29 5 ASP A 90 ? ? -164.39 -44.09 30 5 HIS A 101 ? ? -146.25 -35.12 31 6 SER A 2 ? ? 66.38 -83.18 32 6 ASN A 3 ? ? -159.58 25.31 33 6 GLU A 10 ? ? -66.93 98.88 34 6 ALA A 24 ? ? -161.49 109.07 35 6 GLU A 96 ? ? -130.28 -78.88 36 6 HIS A 100 ? ? -84.44 -79.05 37 7 LEU A 4 ? ? -116.29 -94.45 38 7 GLU A 5 ? ? 66.56 135.08 39 7 ASP A 32 ? ? -153.07 52.59 40 7 ASN A 33 ? ? 66.65 -77.29 41 7 LEU A 47 ? ? -140.53 -61.67 42 7 HIS A 98 ? ? -65.68 98.03 43 8 SER A 2 ? ? -133.28 -72.43 44 8 GLU A 10 ? ? -58.76 85.05 45 8 ASN A 21 ? ? -92.87 39.61 46 8 ASP A 32 ? ? -122.85 -88.52 47 8 ASN A 33 ? ? -123.91 -65.93 48 8 LEU A 95 ? ? -91.39 32.10 49 8 HIS A 97 ? ? 174.34 -37.21 50 8 HIS A 99 ? ? 53.92 -161.06 51 8 HIS A 100 ? ? 61.86 -84.04 52 8 HIS A 101 ? ? 177.60 -48.15 53 9 SER A 2 ? ? -115.65 -167.27 54 9 LEU A 4 ? ? -90.42 33.04 55 9 ASN A 21 ? ? -98.84 43.51 56 9 ALA A 24 ? ? -161.55 112.54 57 9 ASN A 33 ? ? 60.60 -82.76 58 9 GLU A 46 ? ? 56.47 -82.19 59 9 GLN A 50 ? ? 62.35 -88.43 60 9 LEU A 93 ? ? -86.49 -73.47 61 9 HIS A 97 ? ? 65.73 -78.94 62 10 GLU A 10 ? ? -58.63 90.63 63 10 ASP A 32 ? ? -136.63 -75.62 64 10 ASN A 33 ? ? -165.23 -58.49 65 10 LEU A 47 ? ? 72.38 -5.24 66 10 HIS A 99 ? ? 63.14 92.82 67 11 GLU A 10 ? ? -53.88 99.80 68 11 ASN A 21 ? ? -99.00 33.59 69 11 ASP A 32 ? ? -116.73 -77.94 70 11 ASN A 33 ? ? -138.98 -78.01 71 11 ASN A 68 ? ? 68.09 84.07 72 11 HIS A 97 ? ? -105.81 41.92 73 11 HIS A 101 ? ? -173.72 122.94 74 12 ASN A 21 ? ? -90.43 37.55 75 12 ASP A 32 ? ? -160.26 94.61 76 12 ASN A 33 ? ? 59.40 -82.85 77 12 GLU A 46 ? ? -109.85 -60.60 78 12 HIS A 98 ? ? -80.13 49.19 79 12 HIS A 99 ? ? 62.98 -79.80 80 12 HIS A 100 ? ? 178.01 26.27 81 13 GLU A 10 ? ? -62.39 89.11 82 13 ALA A 24 ? ? -162.20 109.33 83 13 ASN A 33 ? ? 72.62 -56.06 84 13 LEU A 93 ? ? -76.47 -71.32 85 13 HIS A 100 ? ? 70.88 -74.26 86 14 GLU A 10 ? ? -69.70 95.52 87 14 ASN A 21 ? ? -107.93 44.53 88 14 ASP A 32 ? ? -110.08 -82.65 89 14 ASN A 33 ? ? -137.44 -46.39 90 14 HIS A 99 ? ? -78.91 -76.05 91 15 ASP A 32 ? ? -109.53 -84.18 92 15 ASN A 33 ? ? -118.22 -90.52 93 15 LEU A 47 ? ? 68.06 77.89 94 15 GLN A 50 ? ? 69.75 -74.08 95 15 HIS A 101 ? ? -165.41 -47.19 96 16 SER A 2 ? ? 69.71 -72.66 97 16 GLU A 5 ? ? -171.93 -177.71 98 16 ASP A 32 ? ? -161.52 98.02 99 16 ASN A 33 ? ? 67.65 -76.20 100 16 HIS A 97 ? ? -145.83 -69.89 101 16 HIS A 99 ? ? -147.85 11.62 102 16 HIS A 100 ? ? 56.08 -103.23 103 16 HIS A 101 ? ? -148.47 27.82 104 17 GLU A 10 ? ? -65.78 99.87 105 17 ASP A 17 ? ? -134.16 -35.80 106 17 ASN A 21 ? ? -88.52 37.04 107 17 ASP A 45 ? ? -92.17 35.46 108 17 HIS A 100 ? ? -177.56 109.39 109 18 SER A 2 ? ? 63.69 105.22 110 18 ILE A 6 ? ? -59.19 109.38 111 18 GLU A 10 ? ? -60.22 95.92 112 18 ASN A 21 ? ? -161.88 78.10 113 18 ASP A 32 ? ? -144.73 -83.40 114 18 ASN A 33 ? ? -105.39 -80.30 115 18 LEU A 47 ? ? -162.71 -36.03 116 18 ASN A 68 ? ? 58.73 70.37 117 18 ASP A 90 ? ? -141.90 -45.69 118 18 HIS A 101 ? ? -129.06 -64.99 119 19 GLU A 10 ? ? -64.94 99.56 120 19 ASN A 34 ? ? 171.85 -24.74 121 19 GLU A 96 ? ? -103.71 -163.03 122 19 HIS A 97 ? ? -63.14 93.93 123 19 HIS A 101 ? ? 67.95 94.32 124 20 GLU A 10 ? ? -65.67 94.78 125 20 LEU A 95 ? ? -103.43 -62.39 126 20 HIS A 99 ? ? -127.73 -80.70 127 20 HIS A 100 ? ? -178.46 -13.45 128 20 HIS A 101 ? ? 75.34 -66.38 #