HEADER HYDROLASE 14-OCT-03 1R5Z TITLE CRYSTAL STRUCTURE OF SUBUNIT C OF V-ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE SUBUNIT C; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: V-TYPE ATPASE SUBUNIT C; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS ALPHA-HELIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.IWATA,H.IMAMURA,E.STAMBOULI,C.IKEDA,M.TAMAKOSHI,K.NAGATA,H.MAKYIO, AUTHOR 2 B.HANKAMER,J.BARBER,M.YOSHIDA,K.YOKOYAMA,S.IWATA REVDAT 3 13-NOV-24 1R5Z 1 REMARK REVDAT 2 24-FEB-09 1R5Z 1 VERSN REVDAT 1 13-JAN-04 1R5Z 0 JRNL AUTH M.IWATA,H.IMAMURA,E.STAMBOULI,C.IKEDA,M.TAMAKOSHI,K.NAGATA, JRNL AUTH 2 H.MAKYIO,B.HANKAMER,J.BARBER,M.YOSHIDA,K.YOKOYAMA,S.IWATA JRNL TITL CRYSTAL STRUCTURE OF A CENTRAL STALK SUBUNIT C AND JRNL TITL 2 REVERSIBLE ASSOCIATION/DISSOCIATION OF VACUOLE-TYPE ATPASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 59 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 14684831 JRNL DOI 10.1073/PNAS.0305165101 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 78514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4353 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 315 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 637 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7662 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10347 ; 1.936 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 957 ; 5.674 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1170 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5820 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3868 ; 0.253 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 542 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4758 ; 1.433 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7545 ; 2.598 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2904 ; 4.162 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2802 ; 7.007 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, AMMONIUM ACETATE, SODIUM CITRATE, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.69533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.39067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.04300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.73833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.34767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 323 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 323 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PRO C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 229 OE1 GLU A 243 1.77 REMARK 500 NH1 ARG C 120 OE2 GLU C 122 1.94 REMARK 500 O HOH A 330 O HOH A 544 2.07 REMARK 500 OE1 GLU B 294 O HOH B 508 2.07 REMARK 500 O HOH B 325 O HOH B 511 2.08 REMARK 500 OE1 GLU C 272 O HOH C 492 2.19 REMARK 500 OH TYR A 191 O HOH A 472 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 34 CA ALA A 34 CB 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 4 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 160 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 VAL A 286 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP B 3 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP B 56 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 293 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 293 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 3 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP C 160 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 237 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 223 -46.79 -145.02 REMARK 500 SER B 210 -17.02 -34.18 REMARK 500 ARG B 223 -52.13 -144.30 REMARK 500 ARG B 256 14.20 -148.57 REMARK 500 ARG C 223 -49.84 -142.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 3 ASP A 4 131.36 REMARK 500 ASP B 3 ASP B 4 134.84 REMARK 500 ASP C 3 ASP C 4 129.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 1R5Z A 1 323 UNP P74902 VATC_THET8 1 323 DBREF 1R5Z B 1 323 UNP P74902 VATC_THET8 1 323 DBREF 1R5Z C 1 323 UNP P74902 VATC_THET8 1 323 SEQRES 1 A 323 MET ALA ASP ASP PHE ALA TYR LEU ASN ALA ARG VAL ARG SEQRES 2 A 323 VAL ARG ARG GLY THR LEU LEU LYS GLU SER PHE PHE GLN SEQRES 3 A 323 GLU ALA LEU ASP LEU SER PHE ALA ASP PHE LEU ARG LEU SEQRES 4 A 323 LEU SER GLU THR VAL TYR GLY GLY GLU LEU ALA GLY GLN SEQRES 5 A 323 GLY LEU PRO ASP VAL ASP ARG ALA VAL LEU ARG THR GLN SEQRES 6 A 323 ALA LYS LEU VAL GLY ASP LEU PRO ARG LEU VAL THR GLY SEQRES 7 A 323 GLU ALA ARG GLU ALA VAL ARG LEU LEU LEU LEU ARG ASN SEQRES 8 A 323 ASP LEU HIS ASN LEU GLN ALA LEU LEU ARG ALA LYS ALA SEQRES 9 A 323 THR GLY ARG PRO PHE GLU GLU VAL LEU LEU LEU PRO GLY SEQRES 10 A 323 THR LEU ARG GLU GLU VAL TRP ARG GLN ALA TYR GLU ALA SEQRES 11 A 323 GLN ASP PRO ALA GLY MET ALA GLN VAL LEU ALA VAL PRO SEQRES 12 A 323 GLY HIS PRO LEU ALA ARG ALA LEU ARG ALA VAL LEU ARG SEQRES 13 A 323 GLU THR GLN ASP LEU ALA ARG VAL GLU ALA LEU LEU ALA SEQRES 14 A 323 LYS ARG PHE PHE GLU ASP VAL ALA LYS ALA ALA LYS GLY SEQRES 15 A 323 LEU ASP GLN PRO ALA LEU ARG ASP TYR LEU ALA LEU GLU SEQRES 16 A 323 VAL ASP ALA GLU ASN LEU ARG THR ALA PHE LYS LEU GLN SEQRES 17 A 323 GLY SER GLY LEU ALA PRO ASP ALA PHE PHE LEU LYS GLY SEQRES 18 A 323 GLY ARG PHE VAL ASP ARG VAL ARG PHE ALA ARG LEU MET SEQRES 19 A 323 GLU GLY ASP TYR ALA VAL LEU ASP GLU LEU SER GLY THR SEQRES 20 A 323 PRO PHE SER GLY LEU SER GLY VAL ARG ASP LEU LYS ALA SEQRES 21 A 323 LEU GLU ARG GLY LEU ARG CYS VAL LEU LEU LYS GLU ALA SEQRES 22 A 323 LYS LYS GLY VAL GLN ASP PRO LEU GLY VAL GLY LEU VAL SEQRES 23 A 323 LEU ALA TYR VAL LYS GLU ARG GLU TRP GLU ALA VAL ARG SEQRES 24 A 323 LEU ARG LEU LEU ALA ARG ARG ALA TYR PHE GLY LEU PRO SEQRES 25 A 323 ARG ALA GLN VAL GLU GLU GLU VAL VAL CYS PRO SEQRES 1 B 323 MET ALA ASP ASP PHE ALA TYR LEU ASN ALA ARG VAL ARG SEQRES 2 B 323 VAL ARG ARG GLY THR LEU LEU LYS GLU SER PHE PHE GLN SEQRES 3 B 323 GLU ALA LEU ASP LEU SER PHE ALA ASP PHE LEU ARG LEU SEQRES 4 B 323 LEU SER GLU THR VAL TYR GLY GLY GLU LEU ALA GLY GLN SEQRES 5 B 323 GLY LEU PRO ASP VAL ASP ARG ALA VAL LEU ARG THR GLN SEQRES 6 B 323 ALA LYS LEU VAL GLY ASP LEU PRO ARG LEU VAL THR GLY SEQRES 7 B 323 GLU ALA ARG GLU ALA VAL ARG LEU LEU LEU LEU ARG ASN SEQRES 8 B 323 ASP LEU HIS ASN LEU GLN ALA LEU LEU ARG ALA LYS ALA SEQRES 9 B 323 THR GLY ARG PRO PHE GLU GLU VAL LEU LEU LEU PRO GLY SEQRES 10 B 323 THR LEU ARG GLU GLU VAL TRP ARG GLN ALA TYR GLU ALA SEQRES 11 B 323 GLN ASP PRO ALA GLY MET ALA GLN VAL LEU ALA VAL PRO SEQRES 12 B 323 GLY HIS PRO LEU ALA ARG ALA LEU ARG ALA VAL LEU ARG SEQRES 13 B 323 GLU THR GLN ASP LEU ALA ARG VAL GLU ALA LEU LEU ALA SEQRES 14 B 323 LYS ARG PHE PHE GLU ASP VAL ALA LYS ALA ALA LYS GLY SEQRES 15 B 323 LEU ASP GLN PRO ALA LEU ARG ASP TYR LEU ALA LEU GLU SEQRES 16 B 323 VAL ASP ALA GLU ASN LEU ARG THR ALA PHE LYS LEU GLN SEQRES 17 B 323 GLY SER GLY LEU ALA PRO ASP ALA PHE PHE LEU LYS GLY SEQRES 18 B 323 GLY ARG PHE VAL ASP ARG VAL ARG PHE ALA ARG LEU MET SEQRES 19 B 323 GLU GLY ASP TYR ALA VAL LEU ASP GLU LEU SER GLY THR SEQRES 20 B 323 PRO PHE SER GLY LEU SER GLY VAL ARG ASP LEU LYS ALA SEQRES 21 B 323 LEU GLU ARG GLY LEU ARG CYS VAL LEU LEU LYS GLU ALA SEQRES 22 B 323 LYS LYS GLY VAL GLN ASP PRO LEU GLY VAL GLY LEU VAL SEQRES 23 B 323 LEU ALA TYR VAL LYS GLU ARG GLU TRP GLU ALA VAL ARG SEQRES 24 B 323 LEU ARG LEU LEU ALA ARG ARG ALA TYR PHE GLY LEU PRO SEQRES 25 B 323 ARG ALA GLN VAL GLU GLU GLU VAL VAL CYS PRO SEQRES 1 C 323 MET ALA ASP ASP PHE ALA TYR LEU ASN ALA ARG VAL ARG SEQRES 2 C 323 VAL ARG ARG GLY THR LEU LEU LYS GLU SER PHE PHE GLN SEQRES 3 C 323 GLU ALA LEU ASP LEU SER PHE ALA ASP PHE LEU ARG LEU SEQRES 4 C 323 LEU SER GLU THR VAL TYR GLY GLY GLU LEU ALA GLY GLN SEQRES 5 C 323 GLY LEU PRO ASP VAL ASP ARG ALA VAL LEU ARG THR GLN SEQRES 6 C 323 ALA LYS LEU VAL GLY ASP LEU PRO ARG LEU VAL THR GLY SEQRES 7 C 323 GLU ALA ARG GLU ALA VAL ARG LEU LEU LEU LEU ARG ASN SEQRES 8 C 323 ASP LEU HIS ASN LEU GLN ALA LEU LEU ARG ALA LYS ALA SEQRES 9 C 323 THR GLY ARG PRO PHE GLU GLU VAL LEU LEU LEU PRO GLY SEQRES 10 C 323 THR LEU ARG GLU GLU VAL TRP ARG GLN ALA TYR GLU ALA SEQRES 11 C 323 GLN ASP PRO ALA GLY MET ALA GLN VAL LEU ALA VAL PRO SEQRES 12 C 323 GLY HIS PRO LEU ALA ARG ALA LEU ARG ALA VAL LEU ARG SEQRES 13 C 323 GLU THR GLN ASP LEU ALA ARG VAL GLU ALA LEU LEU ALA SEQRES 14 C 323 LYS ARG PHE PHE GLU ASP VAL ALA LYS ALA ALA LYS GLY SEQRES 15 C 323 LEU ASP GLN PRO ALA LEU ARG ASP TYR LEU ALA LEU GLU SEQRES 16 C 323 VAL ASP ALA GLU ASN LEU ARG THR ALA PHE LYS LEU GLN SEQRES 17 C 323 GLY SER GLY LEU ALA PRO ASP ALA PHE PHE LEU LYS GLY SEQRES 18 C 323 GLY ARG PHE VAL ASP ARG VAL ARG PHE ALA ARG LEU MET SEQRES 19 C 323 GLU GLY ASP TYR ALA VAL LEU ASP GLU LEU SER GLY THR SEQRES 20 C 323 PRO PHE SER GLY LEU SER GLY VAL ARG ASP LEU LYS ALA SEQRES 21 C 323 LEU GLU ARG GLY LEU ARG CYS VAL LEU LEU LYS GLU ALA SEQRES 22 C 323 LYS LYS GLY VAL GLN ASP PRO LEU GLY VAL GLY LEU VAL SEQRES 23 C 323 LEU ALA TYR VAL LYS GLU ARG GLU TRP GLU ALA VAL ARG SEQRES 24 C 323 LEU ARG LEU LEU ALA ARG ARG ALA TYR PHE GLY LEU PRO SEQRES 25 C 323 ARG ALA GLN VAL GLU GLU GLU VAL VAL CYS PRO FORMUL 4 HOH *637(H2 O) HELIX 1 1 PHE A 5 ARG A 16 1 12 HELIX 2 2 GLY A 17 LEU A 19 5 3 HELIX 3 3 LYS A 21 LEU A 29 1 9 HELIX 4 4 SER A 32 GLU A 42 1 11 HELIX 5 5 THR A 43 LEU A 49 5 7 HELIX 6 6 GLY A 53 VAL A 69 1 17 HELIX 7 7 ASP A 71 VAL A 76 5 6 HELIX 8 8 THR A 77 GLY A 106 1 30 HELIX 9 9 PRO A 108 VAL A 112 5 5 HELIX 10 10 ARG A 120 ALA A 130 1 11 HELIX 11 11 ASP A 132 VAL A 142 1 11 HELIX 12 12 PRO A 146 THR A 158 1 13 HELIX 13 13 ASP A 160 GLY A 182 1 23 HELIX 14 14 GLN A 185 LEU A 207 1 23 HELIX 15 15 ALA A 213 PHE A 217 5 5 HELIX 16 16 ASP A 226 GLU A 235 1 10 HELIX 17 17 ASP A 237 GLU A 243 5 7 HELIX 18 18 PHE A 249 SER A 253 5 5 HELIX 19 19 ASP A 257 LYS A 275 1 19 HELIX 20 20 VAL A 283 GLY A 310 1 28 HELIX 21 21 ARG A 313 VAL A 321 1 9 HELIX 22 22 PHE B 5 ARG B 16 1 12 HELIX 23 23 GLY B 17 LEU B 19 5 3 HELIX 24 24 LYS B 21 LEU B 29 1 9 HELIX 25 25 SER B 32 GLU B 42 1 11 HELIX 26 26 THR B 43 LEU B 49 5 7 HELIX 27 27 GLY B 53 GLY B 70 1 18 HELIX 28 28 ASP B 71 VAL B 76 5 6 HELIX 29 29 THR B 77 GLY B 106 1 30 HELIX 30 30 PRO B 108 VAL B 112 5 5 HELIX 31 31 ARG B 120 ALA B 130 1 11 HELIX 32 32 ASP B 132 VAL B 142 1 11 HELIX 33 33 PRO B 146 THR B 158 1 13 HELIX 34 34 ASP B 160 GLY B 182 1 23 HELIX 35 35 GLN B 185 LEU B 207 1 23 HELIX 36 36 ALA B 213 PHE B 217 5 5 HELIX 37 37 ASP B 226 GLU B 235 1 10 HELIX 38 38 GLY B 236 GLY B 236 5 1 HELIX 39 39 ASP B 237 GLU B 243 5 7 HELIX 40 40 PHE B 249 SER B 253 5 5 HELIX 41 41 ASP B 257 LYS B 274 1 18 HELIX 42 42 LYS B 275 VAL B 277 5 3 HELIX 43 43 VAL B 283 GLY B 310 1 28 HELIX 44 44 ARG B 313 GLU B 318 1 6 HELIX 45 45 PHE C 5 ARG C 16 1 12 HELIX 46 46 GLY C 17 LEU C 19 5 3 HELIX 47 47 LYS C 21 LEU C 29 1 9 HELIX 48 48 SER C 32 GLU C 42 1 11 HELIX 49 49 THR C 43 LEU C 49 5 7 HELIX 50 50 GLY C 53 VAL C 69 1 17 HELIX 51 51 ASP C 71 VAL C 76 5 6 HELIX 52 52 THR C 77 GLY C 106 1 30 HELIX 53 53 PRO C 108 VAL C 112 5 5 HELIX 54 54 ARG C 120 ALA C 130 1 11 HELIX 55 55 ASP C 132 VAL C 142 1 11 HELIX 56 56 PRO C 146 THR C 158 1 13 HELIX 57 57 ASP C 160 LEU C 183 1 24 HELIX 58 58 GLN C 185 LEU C 207 1 23 HELIX 59 59 ALA C 213 PHE C 217 5 5 HELIX 60 60 ASP C 226 GLY C 236 1 11 HELIX 61 61 ASP C 237 GLU C 243 5 7 HELIX 62 62 PHE C 249 SER C 253 5 5 HELIX 63 63 ASP C 257 LYS C 275 1 19 HELIX 64 64 VAL C 283 GLY C 310 1 28 HELIX 65 65 PRO C 312 VAL C 321 1 10 SSBOND 1 CYS A 267 CYS A 322 1555 1555 2.14 SSBOND 2 CYS B 267 CYS B 322 1555 1555 2.10 SSBOND 3 CYS C 267 CYS C 322 1555 1555 2.10 CRYST1 118.429 118.429 152.086 90.00 90.00 120.00 P 61 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008444 0.004875 0.000000 0.00000 SCALE2 0.000000 0.009750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006575 0.00000