HEADER HYDROLASE 14-OCT-03 1R61 TITLE THE STRUCTURE OF PREDICTED METAL-DEPENDENT HYDROLASE FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-DEPENDENT HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS ZINC-DEPENDENT HYDROLASE, STRUCTURAL GENOMICS, CYCLASE, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MADEROVA,D.BOREK,D.TOMCHICK,A.JOACHIMIAK,F.COLLART,Z.OTWINOWSKI, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 13-MAR-24 1R61 1 REMARK LINK REVDAT 4 11-OCT-17 1R61 1 REMARK REVDAT 3 24-FEB-09 1R61 1 VERSN REVDAT 2 18-JAN-05 1R61 1 AUTHOR KEYWDS REMARK REVDAT 1 30-MAR-04 1R61 0 JRNL AUTH J.MADEROVA,D.BOREK,D.TOMCHICK,A.JOACHIMIAK,F.COLLART, JRNL AUTH 2 Z.OTWINOWSKI JRNL TITL THE STRUCTURE OF POTENTIAL METAL-DEPENDENT HYDROLASE WITH JRNL TITL 2 CYCLASE ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 28996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -3.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3378 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3056 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4593 ; 1.796 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7114 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 9.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3714 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 701 ; 0.245 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3732 ; 0.271 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2110 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.086 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2056 ; 5.643 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3337 ; 7.480 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 7.958 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1251 ;10.636 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-03; 22-JUN-03; 24-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : APS; APS; APS REMARK 200 BEAMLINE : 19-BM; 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2814; 0.9196; 0.9999 REMARK 200 MONOCHROMATOR : SI111; SI220; SI220 REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE; CUSTOM-MADE; CUSTOM REMARK 200 -MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 34.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.83300 REMARK 200 R SYM FOR SHELL (I) : 0.83300 REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SNB, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, AMMONIUM SULPHATE, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.77100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.21700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.21700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.88550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.21700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.21700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.65650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.21700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.21700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.88550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.21700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.21700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.65650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.77100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -249.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -509.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2044 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 204 REMARK 465 PRO A 205 REMARK 465 GLU B 204 REMARK 465 PRO B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ARG B 203 O1 SO4 A 2001 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 26 O HOH A 2085 4454 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 192 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 197 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP B 70 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 0 116.12 85.29 REMARK 500 THR A 62 -142.21 59.21 REMARK 500 ASP A 85 -60.24 63.93 REMARK 500 GLU A 118 56.60 -100.11 REMARK 500 GLU A 176 128.10 -36.79 REMARK 500 ALA B 0 -156.11 -108.13 REMARK 500 ASN B 19 8.55 57.65 REMARK 500 ILE B 30 110.03 -165.82 REMARK 500 ASN B 32 -72.92 -135.44 REMARK 500 VAL B 35 121.11 146.85 REMARK 500 GLU B 37 -78.11 -110.01 REMARK 500 GLU B 37 -74.33 -112.40 REMARK 500 SER B 38 136.93 42.73 REMARK 500 ASP B 85 -58.14 67.02 REMARK 500 GLU B 99 127.24 -38.18 REMARK 500 GLU B 118 50.58 -94.05 REMARK 500 ALA B 193 173.06 158.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 57 GLU A 58 -122.55 REMARK 500 GLY A 60 ALA A 61 141.54 REMARK 500 THR A 62 PHE A 63 147.29 REMARK 500 THR B 31 ASN B 32 135.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 GLU A 167 OE1 125.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 45 ND1 REMARK 620 2 HIS B 49 NE2 97.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC35841 RELATED DB: TARGETDB DBREF 1R61 A -1 205 UNP P84132 P84132_BACST 1 207 DBREF 1R61 B -1 205 UNP P84132 P84132_BACST 1 207 SEQRES 1 A 207 ALA ALA MET LYS VAL TYR ASP VAL THR ALA PRO ILE TYR SEQRES 2 A 207 GLU GLY MET PRO VAL TYR LYS ASN LYS PRO GLU LYS GLN SEQRES 3 A 207 PRO LYS ARG THR THR ILE THR ASN GLY TYR VAL THR GLU SEQRES 4 A 207 SER ARG ILE ASP MET ASP VAL HIS THR GLY THR HIS ILE SEQRES 5 A 207 ASP ALA PRO LEU HIS MET VAL GLU GLY GLY ALA THR PHE SEQRES 6 A 207 GLU THR ILE PRO LEU ASN ASP LEU VAL GLY PRO CYS LYS SEQRES 7 A 207 LEU PHE ASP LEU THR HIS VAL ASN ASP ARG ILE THR LYS SEQRES 8 A 207 ASP ASP ILE ALA HIS LEU ASP ILE GLN GLU GLY ASP PHE SEQRES 9 A 207 VAL LEU PHE LYS THR LYS ASN SER PHE GLU ASP ALA PHE SEQRES 10 A 207 HIS PHE GLU PHE ILE PHE VAL ALA GLU ASP ALA ALA ARG SEQRES 11 A 207 TYR LEU ALA ASP LYS GLN ILE ARG GLY VAL GLY ILE ASP SEQRES 12 A 207 ALA LEU GLY ILE GLU ARG ALA GLN GLU GLY HIS PRO THR SEQRES 13 A 207 HIS LYS THR LEU PHE SER ALA GLY VAL ILE ILE ILE GLU SEQRES 14 A 207 GLY LEU ARG LEU LYS ASP VAL PRO GLU GLY ARG TYR PHE SEQRES 15 A 207 MET VAL ALA ALA PRO LEU LYS LEU VAL GLY THR ASP ALA SEQRES 16 A 207 ALA PRO ALA ARG VAL LEU LEU PHE ASP ARG GLU PRO SEQRES 1 B 207 ALA ALA MET LYS VAL TYR ASP VAL THR ALA PRO ILE TYR SEQRES 2 B 207 GLU GLY MET PRO VAL TYR LYS ASN LYS PRO GLU LYS GLN SEQRES 3 B 207 PRO LYS ARG THR THR ILE THR ASN GLY TYR VAL THR GLU SEQRES 4 B 207 SER ARG ILE ASP MET ASP VAL HIS THR GLY THR HIS ILE SEQRES 5 B 207 ASP ALA PRO LEU HIS MET VAL GLU GLY GLY ALA THR PHE SEQRES 6 B 207 GLU THR ILE PRO LEU ASN ASP LEU VAL GLY PRO CYS LYS SEQRES 7 B 207 LEU PHE ASP LEU THR HIS VAL ASN ASP ARG ILE THR LYS SEQRES 8 B 207 ASP ASP ILE ALA HIS LEU ASP ILE GLN GLU GLY ASP PHE SEQRES 9 B 207 VAL LEU PHE LYS THR LYS ASN SER PHE GLU ASP ALA PHE SEQRES 10 B 207 HIS PHE GLU PHE ILE PHE VAL ALA GLU ASP ALA ALA ARG SEQRES 11 B 207 TYR LEU ALA ASP LYS GLN ILE ARG GLY VAL GLY ILE ASP SEQRES 12 B 207 ALA LEU GLY ILE GLU ARG ALA GLN GLU GLY HIS PRO THR SEQRES 13 B 207 HIS LYS THR LEU PHE SER ALA GLY VAL ILE ILE ILE GLU SEQRES 14 B 207 GLY LEU ARG LEU LYS ASP VAL PRO GLU GLY ARG TYR PHE SEQRES 15 B 207 MET VAL ALA ALA PRO LEU LYS LEU VAL GLY THR ASP ALA SEQRES 16 B 207 ALA PRO ALA ARG VAL LEU LEU PHE ASP ARG GLU PRO HET ZN A1001 1 HET SO4 A2001 5 HET SO4 A2002 5 HET SO4 A2004 5 HET SO4 A2006 5 HET SO4 A2009 5 HET ZN B1002 2 HET SO4 B2003 5 HET SO4 B2005 5 HET SO4 B2007 5 HET SO4 B2008 5 HET SO4 B2010 5 HET SO4 B2011 5 HET SO4 B2012 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 12(O4 S 2-) FORMUL 17 HOH *240(H2 O) HELIX 1 1 VAL A 16 GLN A 24 5 9 HELIX 2 2 PRO A 53 VAL A 57 5 5 HELIX 3 3 THR A 88 ALA A 93 1 6 HELIX 4 4 THR A 107 GLU A 112 5 6 HELIX 5 5 ALA A 123 GLN A 134 1 12 HELIX 6 6 HIS A 152 ALA A 161 1 10 HELIX 7 7 VAL B 16 GLN B 24 5 9 HELIX 8 8 PRO B 53 MET B 56 5 4 HELIX 9 9 THR B 62 ILE B 66 5 5 HELIX 10 10 PRO B 67 ASP B 70 5 4 HELIX 11 11 THR B 88 ALA B 93 1 6 HELIX 12 12 THR B 107 GLU B 112 5 6 HELIX 13 13 ALA B 123 GLN B 134 1 12 HELIX 14 14 HIS B 152 ALA B 161 1 10 SHEET 1 A 9 VAL A 3 ASP A 5 0 SHEET 2 A 9 ALA A 193 PHE A 201 -1 O LEU A 200 N TYR A 4 SHEET 3 A 9 GLY A 177 PRO A 185 -1 N PHE A 180 O PHE A 201 SHEET 4 A 9 VAL A 72 ASP A 79 -1 N LEU A 77 O GLY A 177 SHEET 5 A 9 PHE A 102 LYS A 106 1 O LEU A 104 N LYS A 76 SHEET 6 A 9 GLY A 137 GLY A 139 1 O GLY A 137 N VAL A 103 SHEET 7 A 9 ILE A 164 GLU A 167 1 O ILE A 164 N VAL A 138 SHEET 8 A 9 HIS A 49 ASP A 51 -1 N ASP A 51 O ILE A 165 SHEET 9 A 9 ALA A 193 PHE A 201 -1 O ALA A 194 N ILE A 50 SHEET 1 B 4 LYS A 26 ASN A 32 0 SHEET 2 B 4 VAL A 35 ASP A 43 -1 O VAL A 35 N ASN A 32 SHEET 3 B 4 ARG B 39 ASP B 43 -1 O MET B 42 N ILE A 40 SHEET 4 B 4 LYS B 26 THR B 28 -1 N LYS B 26 O ASP B 41 SHEET 1 C 2 ARG A 86 ILE A 87 0 SHEET 2 C 2 PHE A 121 VAL A 122 1 O PHE A 121 N ILE A 87 SHEET 1 D 9 VAL B 3 ASP B 5 0 SHEET 2 D 9 ALA B 193 PHE B 201 -1 O LEU B 200 N TYR B 4 SHEET 3 D 9 GLY B 177 PRO B 185 -1 N PHE B 180 O PHE B 201 SHEET 4 D 9 VAL B 72 ASP B 79 -1 N GLY B 73 O MET B 181 SHEET 5 D 9 PHE B 102 LYS B 106 1 O LEU B 104 N LYS B 76 SHEET 6 D 9 GLY B 137 ILE B 140 1 O GLY B 139 N PHE B 105 SHEET 7 D 9 ILE B 164 GLU B 167 1 O ILE B 164 N VAL B 138 SHEET 8 D 9 HIS B 49 ASP B 51 -1 N HIS B 49 O GLU B 167 SHEET 9 D 9 ALA B 193 PHE B 201 -1 O ALA B 194 N ILE B 50 SHEET 1 E 2 ARG B 86 ILE B 87 0 SHEET 2 E 2 PHE B 121 VAL B 122 1 O PHE B 121 N ILE B 87 LINK OD2 ASP A 51 ZN ZN A1001 1555 1555 2.68 LINK OE1 GLU A 167 ZN ZN A1001 1555 1555 2.75 LINK ND1 HIS B 45 ZN B ZN B1002 1555 1555 2.65 LINK NE2 HIS B 49 ZN B ZN B1002 1555 1555 2.62 LINK OE2 GLU B 167 ZN A ZN B1002 1555 1555 2.28 SITE 1 AC1 3 ASP A 51 HIS A 155 GLU A 167 SITE 1 AC2 7 HIS B 45 HIS B 49 ASP B 51 HIS B 55 SITE 2 AC2 7 HIS B 155 GLU B 167 HOH B2099 SITE 1 AC3 3 MET A 1 ARG A 203 ARG B 203 SITE 1 AC4 4 TYR A 17 LYS A 18 LYS A 20 HOH A2132 SITE 1 AC5 5 LYS B 18 ARG B 147 ALA B 148 HOH B2100 SITE 2 AC5 5 HOH B2104 SITE 1 AC6 3 LYS A 20 GLU A 22 ARG A 128 SITE 1 AC7 3 HIS B 82 ASN B 84 HOH B2071 SITE 1 AC8 5 GLU A 112 ASP A 113 ALA A 114 HIS A 116 SITE 2 AC8 5 HOH A2094 SITE 1 AC9 4 GLU B 112 ASP B 113 ALA B 114 HIS B 116 SITE 1 BC1 4 ASP B 113 ARG B 170 HOH B2060 HOH B2073 SITE 1 BC2 3 LYS A 18 ARG A 147 ALA A 148 SITE 1 BC3 3 HIS B 116 PHE B 117 GLU B 118 SITE 1 BC4 1 ARG B 178 SITE 1 BC5 10 ASN B 109 GLU B 112 ASP B 113 ALA B 114 SITE 2 BC5 10 PHE B 115 LEU B 143 ARG B 170 HOH B2023 SITE 3 BC5 10 HOH B2088 HOH B2107 CRYST1 118.434 118.434 123.542 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008444 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008094 0.00000