HEADER LYASE 14-OCT-03 1R66 TITLE CRYSTAL STRUCTURE OF DESIV (DTDP-GLUCOSE 4,6-DEHYDRATASE) FROM TITLE 2 STREPTOMYCES VENEZUELAE WITH NAD AND TYD BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TDP-GLUCOSE-4,6-DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DTDP-GLUCOSE 4,6-DEHYDRATASE; COMPND 5 EC: 4.2.1.46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VENEZUELAE; SOURCE 3 ORGANISM_TAXID: 54571; SOURCE 4 GENE: DESIV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS DEHYDRATASE, ROSSMANN FOLD, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.M.ALLARD,W.W.CLELAND,H.M.HOLDEN REVDAT 5 23-AUG-23 1R66 1 REMARK REVDAT 4 15-JUL-20 1R66 1 REMARK SEQADV REVDAT 3 13-JUL-11 1R66 1 VERSN REVDAT 2 24-FEB-09 1R66 1 VERSN REVDAT 1 27-JAN-04 1R66 0 JRNL AUTH S.T.M.ALLARD,W.W.CLELAND,H.M.HOLDEN JRNL TITL HIGH RESOLUTION X-RAY STRUCTURE OF DTDP-GLUCOSE JRNL TITL 2 4,6-DEHYDRATASE FROM STREPTOMYCES VENEZUELAE JRNL REF J.BIOL.CHEM. V. 279 2211 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14570895 JRNL DOI 10.1074/JBC.M310134200 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 56518 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5729 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 57828 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.340 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED LEAST SQUARES PROCEDURE. REMARK 4 REMARK 4 1R66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 94 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21200 REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BXK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE REMARK 280 TETRAHYDRATE, SODIUM CACODYLATE, PH 6.3, BATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.75050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.89950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.75050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.89950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 151.00200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 323 REMARK 465 THR A 324 REMARK 465 ALA A 325 REMARK 465 PRO A 326 REMARK 465 GLN A 327 REMARK 465 LEU A 328 REMARK 465 PRO A 329 REMARK 465 ALA A 330 REMARK 465 THR A 331 REMARK 465 ALA A 332 REMARK 465 VAL A 333 REMARK 465 GLU A 334 REMARK 465 VAL A 335 REMARK 465 SER A 336 REMARK 465 ALA A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 101 CD GLU A 101 OE2 0.071 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.083 REMARK 500 GLU A 247 CD GLU A 247 OE2 0.072 REMARK 500 GLU A 252 CD GLU A 252 OE2 0.066 REMARK 500 GLU A 313 CD GLU A 313 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 31 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 54 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 63 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 66 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 172 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 201 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 201 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 210 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 221 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 273 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 280 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 302 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 302 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 74.64 -117.21 REMARK 500 SER A 126 -166.71 -123.95 REMARK 500 GLU A 146 57.09 -142.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 611 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R6D RELATED DB: PDB DBREF 1R66 A 1 337 UNP Q9ZGH3 Q9ZGH3_9ACTO 1 337 SEQADV 1R66 LYS A 287 UNP Q9ZGH3 GLU 287 CONFLICT SEQRES 1 A 337 MET ARG LEU LEU VAL THR GLY GLY ALA GLY PHE ILE GLY SEQRES 2 A 337 SER HIS PHE VAL ARG GLN LEU LEU ALA GLY ALA TYR PRO SEQRES 3 A 337 ASP VAL PRO ALA ASP GLU VAL ILE VAL LEU ASP SER LEU SEQRES 4 A 337 THR TYR ALA GLY ASN ARG ALA ASN LEU ALA PRO VAL ASP SEQRES 5 A 337 ALA ASP PRO ARG LEU ARG PHE VAL HIS GLY ASP ILE ARG SEQRES 6 A 337 ASP ALA GLY LEU LEU ALA ARG GLU LEU ARG GLY VAL ASP SEQRES 7 A 337 ALA ILE VAL HIS PHE ALA ALA GLU SER HIS VAL ASP ARG SEQRES 8 A 337 SER ILE ALA GLY ALA SER VAL PHE THR GLU THR ASN VAL SEQRES 9 A 337 GLN GLY THR GLN THR LEU LEU GLN CYS ALA VAL ASP ALA SEQRES 10 A 337 GLY VAL GLY ARG VAL VAL HIS VAL SER THR ASP GLU VAL SEQRES 11 A 337 TYR GLY SER ILE ASP SER GLY SER TRP THR GLU SER SER SEQRES 12 A 337 PRO LEU GLU PRO ASN SER PRO TYR ALA ALA SER LYS ALA SEQRES 13 A 337 GLY SER ASP LEU VAL ALA ARG ALA TYR HIS ARG THR TYR SEQRES 14 A 337 GLY LEU ASP VAL ARG ILE THR ARG CYS CYS ASN ASN TYR SEQRES 15 A 337 GLY PRO TYR GLN HIS PRO GLU LYS LEU ILE PRO LEU PHE SEQRES 16 A 337 VAL THR ASN LEU LEU ASP GLY GLY THR LEU PRO LEU TYR SEQRES 17 A 337 GLY ASP GLY ALA ASN VAL ARG GLU TRP VAL HIS THR ASP SEQRES 18 A 337 ASP HIS CYS ARG GLY ILE ALA LEU VAL LEU ALA GLY GLY SEQRES 19 A 337 ARG ALA GLY GLU ILE TYR HIS ILE GLY GLY GLY LEU GLU SEQRES 20 A 337 LEU THR ASN ARG GLU LEU THR GLY ILE LEU LEU ASP SER SEQRES 21 A 337 LEU GLY ALA ASP TRP SER SER VAL ARG LYS VAL ALA ASP SEQRES 22 A 337 ARG LYS GLY HIS ASP LEU ARG TYR SER LEU ASP GLY GLY SEQRES 23 A 337 LYS ILE GLU ARG GLU LEU GLY TYR ARG PRO GLN VAL SER SEQRES 24 A 337 PHE ALA ASP GLY LEU ALA ARG THR VAL ARG TRP TYR ARG SEQRES 25 A 337 GLU ASN ARG GLY TRP TRP GLU PRO LEU LYS ALA THR ALA SEQRES 26 A 337 PRO GLN LEU PRO ALA THR ALA VAL GLU VAL SER ALA HET CL A 902 1 HET NAD A 900 44 HET TYD A 901 25 HETNAM CL CHLORIDE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM TYD THYMIDINE-5'-DIPHOSPHATE FORMUL 2 CL CL 1- FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 TYD C10 H16 N2 O11 P2 FORMUL 5 HOH *273(H2 O) HELIX 1 1 GLY A 10 GLY A 23 1 14 HELIX 2 2 ASN A 44 ASP A 52 5 9 HELIX 3 3 ASP A 66 LEU A 74 1 9 HELIX 4 4 HIS A 88 GLY A 95 1 8 HELIX 5 5 ALA A 96 VAL A 104 1 9 HELIX 6 6 VAL A 104 ALA A 117 1 14 HELIX 7 7 GLU A 129 GLY A 132 5 4 HELIX 8 8 SER A 149 GLY A 170 1 22 HELIX 9 9 LYS A 190 ASP A 201 1 12 HELIX 10 10 THR A 220 GLY A 234 1 15 HELIX 11 11 ASN A 250 LEU A 261 1 12 HELIX 12 12 ASP A 264 SER A 266 5 3 HELIX 13 13 GLY A 285 GLY A 293 1 9 HELIX 14 14 SER A 299 ASN A 314 1 16 HELIX 15 15 ASN A 314 GLU A 319 1 6 HELIX 16 16 PRO A 320 LYS A 322 5 3 SHEET 1 A 7 LEU A 57 HIS A 61 0 SHEET 2 A 7 GLU A 32 ASP A 37 1 N VAL A 35 O VAL A 60 SHEET 3 A 7 ARG A 2 THR A 6 1 N LEU A 3 O GLU A 32 SHEET 4 A 7 ALA A 79 HIS A 82 1 O VAL A 81 N LEU A 4 SHEET 5 A 7 ARG A 121 THR A 127 1 O VAL A 123 N HIS A 82 SHEET 6 A 7 VAL A 173 CYS A 178 1 O ARG A 174 N HIS A 124 SHEET 7 A 7 ILE A 239 ILE A 242 1 O ILE A 242 N ARG A 177 SHEET 1 B 3 ASN A 180 TYR A 182 0 SHEET 2 B 3 VAL A 214 HIS A 219 1 O VAL A 218 N ASN A 180 SHEET 3 B 3 LEU A 246 THR A 249 -1 O LEU A 248 N ARG A 215 SHEET 1 C 2 LEU A 205 TYR A 208 0 SHEET 2 C 2 VAL A 268 VAL A 271 1 O ARG A 269 N LEU A 205 SITE 1 AC1 3 PRO A 144 LEU A 145 HOH A 667 SITE 1 AC2 35 ALA A 9 GLY A 10 PHE A 11 ILE A 12 SITE 2 AC2 35 ASP A 37 SER A 38 LEU A 39 THR A 40 SITE 3 AC2 35 ALA A 42 GLY A 43 GLY A 62 ASP A 63 SITE 4 AC2 35 ILE A 64 PHE A 83 ALA A 84 ALA A 85 SITE 5 AC2 35 SER A 87 THR A 102 VAL A 125 SER A 126 SITE 6 AC2 35 TYR A 151 LYS A 155 CYS A 178 CYS A 179 SITE 7 AC2 35 ASN A 180 ASN A 181 HOH A 407 HOH A 414 SITE 8 AC2 35 HOH A 417 HOH A 434 HOH A 440 HOH A 442 SITE 9 AC2 35 HOH A 449 HOH A 556 HOH A 564 SITE 1 AC3 18 HIS A 88 VAL A 89 GLU A 129 ASN A 180 SITE 2 AC3 18 GLU A 189 LYS A 190 LEU A 191 LEU A 194 SITE 3 AC3 18 PRO A 206 TYR A 208 ARG A 215 ASN A 250 SITE 4 AC3 18 ARG A 274 HIS A 277 HOH A 412 HOH A 415 SITE 5 AC3 18 HOH A 447 HOH A 477 CRYST1 75.501 99.799 42.187 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023704 0.00000