HEADER TRANSFERASE 15-OCT-03 1R6A TITLE STRUCTURE OF THE DENGUE VIRUS 2'O METHYLTRANSFERASE IN COMPLEX WITH S- TITLE 2 ADENOSYL HOMOCYSTEINE AND RIBAVIRIN 5' TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-DIRECTED RNA POLYMERASE (RESIDUE 2492-2784); COMPND 5 SYNONYM: NS5; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2 PUERTO RICO/PR159-S1/1969; SOURCE 3 ORGANISM_TAXID: 11066; SOURCE 4 STRAIN: PR159-S1; SOURCE 5 GENE: NS5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS RIBAVIRIN 5'-TRIPHOSPHATE, DENGUE VIRUS, 2'O METHYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BENARROCH,M.P.EGLOFF,L.MULARD,J.L.ROMETTE,B.CANARD REVDAT 3 14-FEB-24 1R6A 1 REMARK SEQADV REVDAT 2 24-FEB-09 1R6A 1 VERSN REVDAT 1 21-SEP-04 1R6A 0 JRNL AUTH D.BENARROCH,M.P.EGLOFF,L.MULARD,C.GUERREIRO,J.L.ROMETTE, JRNL AUTH 2 B.CANARD JRNL TITL A STRUCTURAL BASIS FOR THE INHIBITION OF THE NS5 DENGUE JRNL TITL 2 VIRUS MRNA 2'-O-METHYLTRANSFERASE DOMAIN BY RIBAVIRIN JRNL TITL 3 5'-TRIPHOSPHATE. JRNL REF J.BIOL.CHEM. V. 279 35638 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15152003 JRNL DOI 10.1074/JBC.M400460200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.P.EGLOFF,D.BENARROCH,B.SELISKO,J.L.ROMETTE,B.CANARD REMARK 1 TITL AN RNA CAP (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE IN THE REMARK 1 TITL 2 FLAVIVIRYS RNA POLYMERASE NS5:CRYSTAL STRUCTURE AND REMARK 1 TITL 3 FUNCTIONAL CHARACTERIZATION REMARK 1 REF EMBO J. V. 21 2757 2002 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/21.11.2757 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 691 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11869 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE 0.1 M, AS 0.5 M, LISO4 1.2 REMARK 280 M, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.75667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.51333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.51333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.75667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -215.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 18.75667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 6 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 THR A 271 REMARK 465 PRO A 272 REMARK 465 ASN A 273 REMARK 465 LEU A 274 REMARK 465 ASP A 275 REMARK 465 ILE A 276 REMARK 465 ILE A 277 REMARK 465 GLY A 278 REMARK 465 LYS A 279 REMARK 465 ARG A 280 REMARK 465 ILE A 281 REMARK 465 GLU A 282 REMARK 465 LYS A 283 REMARK 465 ILE A 284 REMARK 465 LYS A 285 REMARK 465 GLN A 286 REMARK 465 GLU A 287 REMARK 465 HIS A 288 REMARK 465 GLU A 289 REMARK 465 THR A 290 REMARK 465 SER A 291 REMARK 465 TRP A 292 REMARK 465 HIS A 293 REMARK 465 TYR A 294 REMARK 465 ASP A 295 REMARK 465 GLN A 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 267 CG1 CG2 CD1 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 188 N SER A 189 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 188 C SER A 189 N -0.208 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 95 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 ASN A 96 N - CA - CB ANGL. DEV. = -25.4 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 PRO A 188 O - C - N ANGL. DEV. = -21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -51.92 74.74 REMARK 500 GLU A 67 9.09 -69.97 REMARK 500 LYS A 95 -73.68 -16.35 REMARK 500 SER A 173 -128.42 -126.48 REMARK 500 ASN A 174 -104.42 -42.54 REMARK 500 ASN A 223 55.91 -97.41 REMARK 500 HIS A 247 98.27 73.49 REMARK 500 SER A 260 3.88 -164.00 REMARK 500 ILE A 265 -155.48 58.47 REMARK 500 ILE A 267 -73.99 -8.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 887 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RVP A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L9K RELATED DB: PDB DBREF 1R6A A 4 296 UNP P12823 POLG_DEN2P 2492 2784 SEQADV 1R6A GLY A 2 UNP P12823 CLONING ARTIFACT SEQADV 1R6A SER A 3 UNP P12823 CLONING ARTIFACT SEQADV 1R6A ILE A 135 UNP P12823 VAL 2623 CONFLICT SEQADV 1R6A ARG A 139 UNP P12823 LYS 2627 CONFLICT SEQADV 1R6A SER A 173 UNP P12823 ASN 2661 CONFLICT SEQADV 1R6A LYS A 193 UNP P12823 ARG 2681 CONFLICT SEQADV 1R6A ALA A 196 UNP P12823 THR 2684 CONFLICT SEQADV 1R6A HIS A 201 UNP P12823 TYR 2689 CONFLICT SEQRES 1 A 295 GLY SER ASN ILE GLY GLU THR LEU GLY GLU LYS TRP LYS SEQRES 2 A 295 SER ARG LEU ASN ALA LEU GLY LYS SER GLU PHE GLN ILE SEQRES 3 A 295 TYR LYS LYS SER GLY ILE GLN GLU VAL ASP ARG THR LEU SEQRES 4 A 295 ALA LYS GLU GLY ILE LYS ARG GLY GLU THR ASP HIS HIS SEQRES 5 A 295 ALA VAL SER ARG GLY SER ALA LYS LEU ARG TRP PHE VAL SEQRES 6 A 295 GLU ARG ASN LEU VAL THR PRO GLU GLY LYS VAL VAL ASP SEQRES 7 A 295 LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS GLY SEQRES 8 A 295 GLY LEU LYS ASN VAL ARG GLU VAL LYS GLY LEU THR LYS SEQRES 9 A 295 GLY GLY PRO GLY HIS GLU GLU PRO ILE PRO MET SER THR SEQRES 10 A 295 TYR GLY TRP ASN LEU VAL ARG LEU GLN SER GLY VAL ASP SEQRES 11 A 295 VAL PHE PHE ILE PRO PRO GLU ARG CYS ASP THR LEU LEU SEQRES 12 A 295 CYS ASP ILE GLY GLU SER SER PRO ASN PRO THR VAL GLU SEQRES 13 A 295 ALA GLY ARG THR LEU ARG VAL LEU ASN LEU VAL GLU ASN SEQRES 14 A 295 TRP LEU SER ASN ASN THR GLN PHE CYS VAL LYS VAL LEU SEQRES 15 A 295 ASN PRO TYR MET PRO SER VAL ILE GLU LYS MET GLU ALA SEQRES 16 A 295 LEU GLN ARG LYS HIS GLY GLY ALA LEU VAL ARG ASN PRO SEQRES 17 A 295 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP VAL SER SEQRES 18 A 295 ASN ALA SER GLY ASN ILE VAL SER SER VAL ASN MET ILE SEQRES 19 A 295 SER ARG MET LEU ILE ASN ARG PHE THR MET ARG HIS LYS SEQRES 20 A 295 LYS ALA THR TYR GLU PRO ASP VAL ASP LEU GLY SER GLY SEQRES 21 A 295 THR ARG ASN ILE GLY ILE GLU SER GLU THR PRO ASN LEU SEQRES 22 A 295 ASP ILE ILE GLY LYS ARG ILE GLU LYS ILE LYS GLN GLU SEQRES 23 A 295 HIS GLU THR SER TRP HIS TYR ASP GLN HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HET SO4 A 906 5 HET SO4 A 907 5 HET SAH A 887 26 HET RVP A 300 21 HETNAM SO4 SULFATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM RVP RIBAVIRIN MONOPHOSPHATE FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 SAH C14 H20 N6 O5 S FORMUL 10 RVP C8 H13 N4 O8 P FORMUL 11 HOH *66(H2 O) HELIX 1 1 LEU A 9 ALA A 19 1 11 HELIX 2 2 GLY A 21 LYS A 30 1 10 HELIX 3 3 ARG A 38 ARG A 47 1 10 HELIX 4 4 ARG A 57 GLU A 67 1 11 HELIX 5 5 GLY A 85 GLY A 92 1 8 HELIX 6 6 GLY A 120 ASN A 122 5 3 HELIX 7 7 ASP A 131 ILE A 135 5 5 HELIX 8 8 ASN A 153 ASN A 170 1 18 HELIX 9 9 MET A 187 GLY A 202 1 16 HELIX 10 10 ASN A 227 ARG A 242 1 16 SHEET 1 A 2 GLN A 34 ASP A 37 0 SHEET 2 A 2 THR A 251 PRO A 254 1 O THR A 251 N GLU A 35 SHEET 1 B 7 VAL A 124 GLN A 127 0 SHEET 2 B 7 VAL A 97 LEU A 103 1 N GLY A 102 O ARG A 125 SHEET 3 B 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 B 7 THR A 142 CYS A 145 1 O LEU A 144 N LEU A 80 SHEET 5 B 7 GLN A 177 VAL A 182 1 O GLN A 177 N LEU A 143 SHEET 6 B 7 MET A 218 VAL A 221 -1 O TRP A 220 N VAL A 180 SHEET 7 B 7 ALA A 204 VAL A 206 -1 N VAL A 206 O TYR A 219 SITE 1 AC1 4 GLY A 109 HIS A 110 GLU A 111 SAH A 887 SITE 1 AC2 5 LYS A 105 HIS A 110 SER A 150 SER A 151 SITE 2 AC2 5 ARG A 160 SITE 1 AC3 4 ARG A 38 SER A 56 ARG A 57 ARG A 84 SITE 1 AC4 4 ARG A 57 LYS A 61 HOH A 931 HOH A 969 SITE 1 AC5 3 LYS A 30 ARG A 57 ARG A 212 SITE 1 AC6 7 LYS A 105 ASP A 131 VAL A 156 ARG A 160 SITE 2 AC6 7 ARG A 163 SAH A 887 HOH A 963 SITE 1 AC7 7 GLN A 34 HIS A 52 GLU A 67 ARG A 68 SITE 2 AC7 7 ARG A 246 HIS A 247 HOH A 927 SITE 1 AC8 17 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC8 17 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC8 17 LYS A 105 VAL A 130 ASP A 131 VAL A 132 SITE 4 AC8 17 PHE A 133 ASP A 146 SO4 A 901 SO4 A 906 SITE 5 AC8 17 HOH A 917 SITE 1 AC9 13 LYS A 14 LEU A 17 ASN A 18 LEU A 20 SITE 2 AC9 13 LYS A 22 PHE A 25 LYS A 29 SER A 150 SITE 3 AC9 13 SER A 151 PRO A 152 SER A 214 HOH A 943 SITE 4 AC9 13 HOH A 947 CRYST1 111.990 111.990 56.270 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008929 0.005155 0.000000 0.00000 SCALE2 0.000000 0.010311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017771 0.00000