HEADER CHAPERONE/PROTEIN BINDING 16-OCT-03 1R6Q TITLE CLPNS WITH FRAGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL CLPA (RESIDUES 1-143); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SG22176; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSK39; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: DH5(ALPHA); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PBAD33-CLPS KEYWDS CLPA, AAA+, N-TERMINAL DOMAIN, CLPS, CRYSTAL, BINDING MECHANISM, KEYWDS 2 CHAPERONE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.XIA,M.R.MAURIZI,F.GUO,S.K.SINGH,L.ESSER REVDAT 4 23-AUG-23 1R6Q 1 REMARK REVDAT 3 13-JUL-11 1R6Q 1 VERSN REVDAT 2 24-FEB-09 1R6Q 1 VERSN REVDAT 1 15-FEB-05 1R6Q 0 JRNL AUTH D.XIA,L.ESSER,S.K.SINGH,F.GUO,M.R.MAURIZI JRNL TITL CRYSTALLOGRAPHIC INVESTIGATION OF PEPTIDE BINDING SITES IN JRNL TITL 2 THE N-DOMAIN OF THE CLPA CHAPERONE. JRNL REF J.STRUCT.BIOL. V. 146 166 2004 JRNL REFN ISSN 1047-8477 JRNL PMID 15037248 JRNL DOI 10.1016/J.JSB.2003.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3910 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5303 ; 1.065 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 2.312 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;14.559 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2898 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1801 ; 0.182 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 299 ; 0.146 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.061 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.169 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.177 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2359 ; 1.333 ; 0.800 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3806 ; 3.436 ; 3.800 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1551 ; 6.016 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 8.329 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9220 26.4940 17.7827 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.2807 REMARK 3 T33: 0.0726 T12: -0.0163 REMARK 3 T13: 0.0256 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 5.4356 L22: 4.1619 REMARK 3 L33: 4.3624 L12: 0.1374 REMARK 3 L13: 1.4809 L23: 1.4183 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.5592 S13: 0.0603 REMARK 3 S21: 0.4270 S22: -0.1027 S23: -0.1940 REMARK 3 S31: 0.1316 S32: -0.3561 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3286 23.9551 6.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1735 REMARK 3 T33: 0.1123 T12: 0.0346 REMARK 3 T13: 0.0298 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 4.9235 L22: 3.6429 REMARK 3 L33: 5.0781 L12: 0.1998 REMARK 3 L13: 1.4048 L23: 0.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: 0.0279 S13: -0.0817 REMARK 3 S21: -0.0288 S22: -0.1159 S23: -0.3592 REMARK 3 S31: 0.1227 S32: -0.1578 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1540 59.3037 14.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.3096 REMARK 3 T33: 0.0939 T12: 0.0812 REMARK 3 T13: 0.0042 T23: 0.0965 REMARK 3 L TENSOR REMARK 3 L11: 5.3389 L22: 2.2882 REMARK 3 L33: 2.2003 L12: 0.3481 REMARK 3 L13: 0.0525 L23: 0.9386 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: 0.8126 S13: 0.0138 REMARK 3 S21: -0.3395 S22: -0.0647 S23: -0.1571 REMARK 3 S31: -0.0796 S32: 0.1571 S33: -0.0968 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9806 59.0556 25.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.1037 REMARK 3 T33: 0.0189 T12: 0.0276 REMARK 3 T13: -0.0262 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 6.5365 L22: 5.4436 REMARK 3 L33: 2.8280 L12: -1.4601 REMARK 3 L13: -0.3587 L23: 0.7690 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: 0.1064 S13: -0.1086 REMARK 3 S21: 0.1513 S22: -0.1358 S23: -0.2054 REMARK 3 S31: 0.0910 S32: 0.0530 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 20 C 106 REMARK 3 ORIGIN FOR THE GROUP (A): 73.8776 35.1516 14.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.2427 REMARK 3 T33: 0.2151 T12: 0.0624 REMARK 3 T13: -0.0285 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 5.6907 L22: 6.2391 REMARK 3 L33: 2.3088 L12: 3.6296 REMARK 3 L13: -0.1743 L23: 0.2224 REMARK 3 S TENSOR REMARK 3 S11: 0.2762 S12: -0.2491 S13: -0.4918 REMARK 3 S21: 0.2019 S22: -0.1017 S23: -0.4620 REMARK 3 S31: -0.0364 S32: 0.1989 S33: -0.1745 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 106 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1861 46.1968 25.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1926 REMARK 3 T33: 0.1209 T12: -0.0399 REMARK 3 T13: -0.0337 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.2112 L22: 3.5169 REMARK 3 L33: 1.7451 L12: -2.8573 REMARK 3 L13: 0.6998 L23: -0.5837 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 0.0299 S13: 0.3490 REMARK 3 S21: -0.0516 S22: 0.0925 S23: -0.2262 REMARK 3 S31: -0.1035 S32: -0.0017 S33: 0.0103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39975 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 1.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1MBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.80667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO REMARK 300 HETERODIMERIC COMPLEXES REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 143 REMARK 465 ARG B 143 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 THR C 4 REMARK 465 ASN C 5 REMARK 465 ASP C 6 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 LYS C 17 REMARK 465 VAL C 18 REMARK 465 ARG C 19 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 THR D 4 REMARK 465 ASN D 5 REMARK 465 LEU D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 GLU D 16 REMARK 465 LYS D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 ASP D 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU C 41 Y1 YBT B 144 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 25 SD MET B 25 CE -0.340 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 73 92.79 -68.21 REMARK 500 GLN C 12 70.27 -178.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y1 D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MBU RELATED DB: PDB REMARK 900 RELATED ID: 1R6O RELATED DB: PDB REMARK 900 RELATED ID: 1R6C RELATED DB: PDB DBREF 1R6Q A 1 143 UNP P0ABH9 CLPA_ECOLI 1 143 DBREF 1R6Q B 1 143 UNP P0ABH9 CLPA_ECOLI 1 143 DBREF 1R6Q C 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 DBREF 1R6Q D 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 SEQRES 1 A 143 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 A 143 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 A 143 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 A 143 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 A 143 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 A 143 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 A 143 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 A 143 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 A 143 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 A 143 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 A 143 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR ARG SEQRES 1 B 143 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 B 143 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 B 143 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 B 143 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 B 143 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 B 143 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 B 143 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 B 143 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 B 143 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 B 143 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 B 143 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR ARG SEQRES 1 C 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 C 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 C 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 C 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 C 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 C 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 C 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 C 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 C 106 LYS ALA SEQRES 1 D 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 D 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 D 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 D 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 D 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 D 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 D 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 D 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 D 106 LYS ALA HET YBT A 144 15 HET YBT A 145 15 HET GOL A 146 6 HET YBT B 144 15 HET YBT B 145 15 HET GOL B 146 6 HET Y1 C 107 1 HET Y1 D 107 1 HETNAM YBT BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE HETNAM 2 YBT YTTRIUM HETNAM GOL GLYCEROL HETNAM Y1 YTTRIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 YBT 4(C8 H19 N O5 Y) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 Y1 2(Y 2+) FORMUL 13 HOH *209(H2 O) HELIX 1 1 ASN A 3 HIS A 20 1 18 HELIX 2 2 THR A 26 LEU A 35 1 10 HELIX 3 3 ASN A 37 CYS A 47 1 11 HELIX 4 4 ASP A 50 THR A 66 1 17 HELIX 5 5 THR A 81 SER A 97 1 17 HELIX 6 6 THR A 104 PHE A 113 1 10 HELIX 7 7 SER A 118 HIS A 127 1 10 HELIX 8 8 SER A 130 GLY A 141 1 12 HELIX 9 9 ASN B 3 HIS B 20 1 18 HELIX 10 10 THR B 26 LEU B 35 1 10 HELIX 11 11 ASN B 37 CYS B 47 1 11 HELIX 12 12 ASP B 50 THR B 66 1 17 HELIX 13 13 THR B 81 SER B 98 1 18 HELIX 14 14 THR B 104 PHE B 113 1 10 HELIX 15 15 SER B 118 HIS B 127 1 10 HELIX 16 16 SER B 130 GLY B 141 1 12 HELIX 17 17 PRO C 39 SER C 52 1 14 HELIX 18 18 ASP C 54 GLY C 69 1 16 HELIX 19 19 ALA C 78 ASN C 95 1 18 HELIX 20 20 PRO D 39 SER D 52 1 14 HELIX 21 21 ASP D 54 GLY D 69 1 16 HELIX 22 22 ALA D 78 ASN D 95 1 18 SHEET 1 A 2 PHE A 24 MET A 25 0 SHEET 2 A 2 GLN A 79 PRO A 80 1 O GLN A 79 N MET A 25 SHEET 1 B 2 PHE B 24 MET B 25 0 SHEET 2 B 2 GLN B 79 PRO B 80 1 O GLN B 79 N MET B 25 SHEET 1 C 3 LYS C 70 THR C 77 0 SHEET 2 C 3 MET C 27 VAL C 33 -1 N TYR C 28 O PHE C 76 SHEET 3 C 3 LEU C 100 LYS C 105 -1 O THR C 102 N ILE C 31 SHEET 1 D 3 LYS D 70 THR D 77 0 SHEET 2 D 3 MET D 27 VAL D 33 -1 N VAL D 30 O CYS D 73 SHEET 3 D 3 LEU D 100 LYS D 105 -1 O THR D 102 N ILE D 31 SITE 1 AC1 3 YBT A 145 ASP C 9 ASP C 11 SITE 1 AC2 2 ASP D 9 ASP D 11 SITE 1 AC3 7 ASN B 3 GLN B 4 GLU B 5 GLU B 102 SITE 2 AC3 7 HOH B 175 HOH B 209 GLU C 41 SITE 1 AC4 4 ARG A 41 GLU A 42 GLU A 45 HOH A 183 SITE 1 AC5 4 ARG B 41 GLU B 42 GLU B 45 HOH B 167 SITE 1 AC6 6 GLU A 7 HOH A 198 ASP C 11 Y1 C 107 SITE 2 AC6 6 ASP D 54 GLU D 56 SITE 1 AC7 3 GLU A 117 GLU C 82 HOH C 117 SITE 1 AC8 4 GLU B 117 HOH B 158 ALA D 78 GLU D 82 CRYST1 87.913 87.913 209.420 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011375 0.006567 0.000000 0.00000 SCALE2 0.000000 0.013135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004775 0.00000