HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-OCT-03 1R6Y TITLE CRYSTAL STRUCTURE OF YGIN FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YGIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, FUNCTIONAL ANNOTATION, KEYWDS 2 FERREDOXIN-LIKE FOLD, MONTREAL-KINGSTON BACTERIAL STRUCTURAL KEYWDS 3 GENOMICS INITIATIVE, BSGI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ADAMS,Z.JIA,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 6 14-FEB-24 1R6Y 1 SEQADV REVDAT 5 13-JUL-11 1R6Y 1 VERSN REVDAT 4 24-FEB-09 1R6Y 1 VERSN REVDAT 3 12-APR-05 1R6Y 1 JRNL REVDAT 2 07-JAN-05 1R6Y 1 JRNL REMARK MASTER REVDAT 1 02-NOV-04 1R6Y 0 JRNL AUTH M.A.ADAMS,Z.JIA JRNL TITL STRUCTURAL AND BIOCHEMICAL EVIDENCE FOR AN ENZYMATIC QUINONE JRNL TITL 2 REDOX CYCLE IN ESCHERICHIA COLI: IDENTIFICATION OF A NOVEL JRNL TITL 3 QUINOL MONOOXYGENASE. JRNL REF J.BIOL.CHEM. V. 280 8358 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15613473 JRNL DOI 10.1074/JBC.M412637200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 646 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 797 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 814 ; 0.040 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 748 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1103 ; 2.330 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1745 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 102 ; 6.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 125 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 896 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 147 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 161 ; 0.269 ; 0.202 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 830 ; 0.256 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 541 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 13 ; 0.213 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.445 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.062 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 514 ; 1.666 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 831 ; 3.012 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 300 ; 4.660 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 272 ; 7.551 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-02; 11-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; NSLS REMARK 200 BEAMLINE : F1; X9A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.199998; 0.979383, 0.979228, REMARK 200 0.971708 REMARK 200 MONOCHROMATOR : RH-COATED SI MIRRORS; DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, TRI-SODIUM CITRATE, REMARK 280 SODIUM/POTASSIUM TARTRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.02850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.02850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.02850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.02850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.02850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.02850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 51.02850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 51.02850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 51.02850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 51.02850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 51.02850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 51.02850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 51.02850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 51.02850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 51.02850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 51.02850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 51.02850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 51.02850 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 76.54275 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 25.51425 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.51425 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 76.54275 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 76.54275 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 76.54275 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 25.51425 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 25.51425 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 76.54275 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 25.51425 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 76.54275 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 25.51425 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 76.54275 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 25.51425 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 25.51425 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 25.51425 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 76.54275 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 25.51425 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 76.54275 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 76.54275 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 76.54275 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 25.51425 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 25.51425 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 76.54275 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 76.54275 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 25.51425 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 25.51425 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 25.51425 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 25.51425 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 76.54275 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 25.51425 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 76.54275 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 25.51425 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 76.54275 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 76.54275 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 76.54275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 25.51425 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 25.51425 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 -25.51425 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 104 REMARK 465 SER A 105 REMARK 465 GLY A 106 REMARK 465 ARG A 107 REMARK 465 VAL A 108 REMARK 465 GLU A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 117 O HOH A 123 1.03 REMARK 500 O HOH A 121 O HOH A 128 1.22 REMARK 500 CB ASP A 45 O HOH A 116 1.30 REMARK 500 O HOH A 176 O HOH A 260 1.34 REMARK 500 O VAL A 4 O HOH A 273 1.34 REMARK 500 CG ASP A 45 O HOH A 116 1.37 REMARK 500 C GLY A 103 O HOH A 120 1.40 REMARK 500 O HOH A 117 O HOH A 118 1.44 REMARK 500 O HOH A 118 O HOH A 119 1.48 REMARK 500 OD2 ASP A 45 O HOH A 116 1.62 REMARK 500 O HOH A 144 O HOH A 147 1.65 REMARK 500 O HOH A 160 O HOH A 237 1.69 REMARK 500 O HOH A 166 O HOH A 212 1.70 REMARK 500 N MET A 1 O HOH A 119 1.77 REMARK 500 O HOH A 120 O HOH A 121 1.80 REMARK 500 O HOH A 155 O HOH A 158 1.84 REMARK 500 O HOH A 181 O HOH A 263 1.86 REMARK 500 O HOH A 117 O HOH A 188 1.89 REMARK 500 SD MET A 43 O HOH A 243 1.91 REMARK 500 NH1 ARG A 9 O HOH A 240 1.91 REMARK 500 O HOH A 166 O HOH A 207 1.91 REMARK 500 O HOH A 173 O HOH A 264 1.93 REMARK 500 CA MET A 1 O HOH A 119 1.93 REMARK 500 O HOH A 121 O HOH A 160 1.93 REMARK 500 O HOH A 123 O HOH A 188 1.94 REMARK 500 CD1 ILE A 69 O HOH A 227 1.95 REMARK 500 O HOH A 191 O HOH A 193 1.95 REMARK 500 O HOH A 144 O HOH A 145 1.96 REMARK 500 O HOH A 125 O HOH A 248 1.96 REMARK 500 O HOH A 189 O HOH A 190 1.97 REMARK 500 O HOH A 183 O HOH A 202 2.04 REMARK 500 O GLY A 103 O HOH A 120 2.05 REMARK 500 ND1 HIS A 15 O HOH A 292 2.09 REMARK 500 O HOH A 124 O HOH A 125 2.10 REMARK 500 O HOH A 178 O HOH A 252 2.10 REMARK 500 O HOH A 173 O HOH A 181 2.10 REMARK 500 O HOH A 206 O HOH A 234 2.12 REMARK 500 N MET A 1 O HOH A 118 2.13 REMARK 500 O HOH A 190 O HOH A 191 2.14 REMARK 500 NH2 ARG A 9 O HOH A 233 2.15 REMARK 500 O HOH A 118 O HOH A 123 2.16 REMARK 500 O HOH A 214 O HOH A 260 2.18 REMARK 500 C VAL A 4 O HOH A 273 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 293 O HOH A 293 19444 1.40 REMARK 500 O HOH A 150 O HOH A 157 10554 1.49 REMARK 500 O HOH A 146 O HOH A 147 10554 1.65 REMARK 500 O HOH A 189 O HOH A 189 22554 1.71 REMARK 500 O HOH A 128 O HOH A 163 22554 1.76 REMARK 500 O HOH A 174 O HOH A 176 22554 1.85 REMARK 500 O HOH A 183 O HOH A 184 5555 1.86 REMARK 500 O HOH A 128 O HOH A 164 22554 1.89 REMARK 500 O HOH A 147 O HOH A 247 7454 2.14 REMARK 500 O HOH A 229 O HOH A 231 22554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 17 CD ARG A 17 NE -0.124 REMARK 500 MET A 81 SD MET A 81 CE -0.544 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 98 CG - CD - NE ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 15 28.62 47.78 REMARK 500 TYR A 40 92.10 -165.55 REMARK 500 ASP A 58 43.48 -99.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YGIN_ECOLI RELATED DB: TARGETDB DBREF 1R6Y A 1 104 UNP P40718 YGIN_ECOLI 1 104 SEQADV 1R6Y SER A 105 UNP P40718 EXPRESSION TAG SEQADV 1R6Y GLY A 106 UNP P40718 EXPRESSION TAG SEQADV 1R6Y ARG A 107 UNP P40718 EXPRESSION TAG SEQADV 1R6Y VAL A 108 UNP P40718 EXPRESSION TAG SEQADV 1R6Y GLU A 109 UNP P40718 EXPRESSION TAG SEQADV 1R6Y HIS A 110 UNP P40718 EXPRESSION TAG SEQADV 1R6Y HIS A 111 UNP P40718 EXPRESSION TAG SEQADV 1R6Y HIS A 112 UNP P40718 EXPRESSION TAG SEQADV 1R6Y HIS A 113 UNP P40718 EXPRESSION TAG SEQADV 1R6Y HIS A 114 UNP P40718 EXPRESSION TAG SEQADV 1R6Y HIS A 115 UNP P40718 EXPRESSION TAG SEQRES 1 A 115 MET LEU THR VAL ILE ALA GLU ILE ARG THR ARG PRO GLY SEQRES 2 A 115 GLN HIS HIS ARG GLN ALA VAL LEU ASP GLN PHE ALA LYS SEQRES 3 A 115 ILE VAL PRO THR VAL LEU LYS GLU GLU GLY CYS HIS GLY SEQRES 4 A 115 TYR ALA PRO MET VAL ASP CYS ALA ALA GLY VAL SER PHE SEQRES 5 A 115 GLN SER MET ALA PRO ASP SER ILE VAL MET ILE GLU GLN SEQRES 6 A 115 TRP GLU SER ILE ALA HIS LEU GLU ALA HIS LEU GLN THR SEQRES 7 A 115 PRO HIS MET LYS ALA TYR SER GLU ALA VAL LYS GLY ASP SEQRES 8 A 115 VAL LEU GLU MET ASN ILE ARG ILE LEU GLN PRO GLY ILE SEQRES 9 A 115 SER GLY ARG VAL GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *185(H2 O) HELIX 1 1 HIS A 15 LYS A 33 1 19 HELIX 2 2 SER A 68 GLN A 77 1 10 HELIX 3 3 THR A 78 LYS A 89 1 12 SHEET 1 A 4 CYS A 37 MET A 43 0 SHEET 2 A 4 SER A 59 TRP A 66 -1 O VAL A 61 N MET A 43 SHEET 3 A 4 LEU A 2 THR A 10 -1 N ILE A 8 O ILE A 60 SHEET 4 A 4 VAL A 92 LEU A 100 -1 O LEU A 100 N THR A 3 CRYST1 102.057 102.057 102.057 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009798 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009798 0.00000