HEADER TRANSFERASE 17-OCT-03 1R74 TITLE CRYSTAL STRUCTURE OF HUMAN GLYCINE N-METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17B; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGE3 KEYWDS GLYCINE N-METHYLTRANSFERASE, HUMAN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,Z.LUKA,C.WAGNER,M.E.NEWCOMER REVDAT 5 23-AUG-23 1R74 1 REMARK LINK REVDAT 4 11-OCT-17 1R74 1 REMARK REVDAT 3 13-JUL-11 1R74 1 VERSN REVDAT 2 24-FEB-09 1R74 1 VERSN REVDAT 1 21-SEP-04 1R74 0 JRNL AUTH S.PAKHOMOVA,Z.LUKA,S.GROHMANN,C.WAGNER,M.E.NEWCOMER JRNL TITL GLYCINE N-METHYLTRANSFERASES: A COMPARISON OF THE CRYSTAL JRNL TITL 2 STRUCTURES AND KINETIC PROPERTIES OF RECOMBINANT HUMAN, JRNL TITL 3 MOUSE AND RAT ENZYMES. JRNL REF PROTEINS V. 57 331 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15340920 JRNL DOI 10.1002/PROT.20209 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 22070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.560 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4381 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3904 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5945 ; 2.167 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9038 ; 1.605 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 7.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4929 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 917 ; 0.033 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 952 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4270 ; 0.252 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2666 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.345 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.438 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2741 ; 0.862 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4355 ; 1.568 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1640 ; 2.588 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1590 ; 4.003 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 125 1 REMARK 3 1 B 6 B 126 1 REMARK 3 2 A 133 A 224 1 REMARK 3 2 B 133 B 225 1 REMARK 3 3 A 237 A 293 1 REMARK 3 3 B 237 B 293 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3729 ; 0.14 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3729 ; 0.21 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-02; NULL REMARK 200 TEMPERATURE (KELVIN) : 103; NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; NULL REMARK 200 RADIATION SOURCE : ROTATING ANODE; NULL REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23864 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1XVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, NA CITRATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 300 GENERATED FROM THE DIMER IN THE ASYMMETRIC UNIT BY THE OPERATION: REMARK 300 -X+2,-Y-1,Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 151.68000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -83.23000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 126 REMARK 465 SER A 127 REMARK 465 ALA A 128 REMARK 465 GLN A 225 REMARK 465 VAL A 226 REMARK 465 PRO A 227 REMARK 465 GLY A 228 REMARK 465 ALA A 229 REMARK 465 GLY A 230 REMARK 465 GLN A 231 REMARK 465 ASP A 232 REMARK 465 GLY A 233 REMARK 465 SER A 234 REMARK 465 PRO A 235 REMARK 465 ASP A 294 REMARK 465 VAL B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 VAL B 226 REMARK 465 PRO B 227 REMARK 465 GLY B 228 REMARK 465 ALA B 229 REMARK 465 GLY B 230 REMARK 465 GLN B 231 REMARK 465 ASP B 232 REMARK 465 GLY B 233 REMARK 465 SER B 234 REMARK 465 PRO B 235 REMARK 465 ASP B 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 ILE A 34 CG1 CG2 CD1 REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 THR A 37 OG1 CG2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 SER A 39 OG REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 SER A 153 OG REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 SER A 238 OG REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 GLN A 265 CG CD OE1 NE2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ILE A 282 CG1 CG2 CD1 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 SER B 127 OG REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 185 ND2 ASN A 213 2745 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 43 CG GLU B 43 CD 0.102 REMARK 500 TYR B 44 CD1 TYR B 44 CE1 0.107 REMARK 500 GLN B 54 CG GLN B 54 CD 0.187 REMARK 500 VAL B 63 CB VAL B 63 CG1 -0.169 REMARK 500 VAL B 69 CB VAL B 69 CG2 0.141 REMARK 500 LYS B 160 CA LYS B 160 CB 0.138 REMARK 500 SER B 184 CB SER B 184 OG -0.098 REMARK 500 TYR B 244 CD1 TYR B 244 CE1 -0.095 REMARK 500 TYR B 245 CZ TYR B 245 CE2 0.079 REMARK 500 HIS B 247 CE1 HIS B 247 NE2 -0.100 REMARK 500 CYS B 248 CB CYS B 248 SG 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 62 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 88 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 123 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 151 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 167 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS B 264 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 73.25 -151.85 REMARK 500 ASN A 213 15.56 56.16 REMARK 500 PHE A 272 -4.37 77.53 REMARK 500 GLN A 279 150.81 -42.38 REMARK 500 ASP B 36 77.85 -110.18 REMARK 500 SER B 127 -175.68 -46.61 REMARK 500 ALA B 128 63.02 -68.85 REMARK 500 GLU B 129 -88.31 -166.21 REMARK 500 ASN B 140 32.26 71.78 REMARK 500 ASN B 213 19.60 56.16 REMARK 500 PHE B 272 -8.99 77.62 REMARK 500 GLN B 279 151.24 -44.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 181 0.06 SIDE CHAIN REMARK 500 HIS B 247 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 2284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 2001 DBREF 1R74 A 1 294 UNP Q14749 GNMT_HUMAN 1 294 DBREF 1R74 B 1 294 UNP Q14749 GNMT_HUMAN 1 294 SEQRES 1 A 294 VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL ALA SEQRES 2 A 294 ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU ALA SEQRES 3 A 294 ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SER SEQRES 4 A 294 ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU LEU SEQRES 5 A 294 ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA CYS SEQRES 6 A 294 GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU GLY SEQRES 7 A 294 PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET LEU SEQRES 8 A 294 LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS GLU SEQRES 9 A 294 PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN TRP SEQRES 10 A 294 MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU GLY SEQRES 11 A 294 GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA SEQRES 12 A 294 HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS ARG SEQRES 13 A 294 LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA GLY SEQRES 14 A 294 GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS ILE SEQRES 15 A 294 LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR SEQRES 16 A 294 TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER VAL SEQRES 17 A 294 LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP SEQRES 18 A 294 TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SER SEQRES 19 A 294 PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO HIS SEQRES 20 A 294 CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA PHE SEQRES 21 A 294 GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE LYS SEQRES 22 A 294 PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR PHE SEQRES 23 A 294 ILE HIS VAL LEU LYS ARG THR ASP SEQRES 1 B 294 VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL ALA SEQRES 2 B 294 ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU ALA SEQRES 3 B 294 ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SER SEQRES 4 B 294 ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU LEU SEQRES 5 B 294 ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA CYS SEQRES 6 B 294 GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU GLY SEQRES 7 B 294 PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET LEU SEQRES 8 B 294 LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS GLU SEQRES 9 B 294 PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN TRP SEQRES 10 B 294 MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU GLY SEQRES 11 B 294 GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE ALA SEQRES 12 B 294 HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS ARG SEQRES 13 B 294 LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA GLY SEQRES 14 B 294 GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS ILE SEQRES 15 B 294 LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE TYR SEQRES 16 B 294 TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER VAL SEQRES 17 B 294 LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU ASP SEQRES 18 B 294 TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SER SEQRES 19 B 294 PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO HIS SEQRES 20 B 294 CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA PHE SEQRES 21 B 294 GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE LYS SEQRES 22 B 294 PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR PHE SEQRES 23 B 294 ILE HIS VAL LEU LYS ARG THR ASP HET BME A1187 4 HET CIT A1001 13 HET BME B2187 4 HET BME B2264 4 HET BME B2284 4 HET CIT B2001 13 HETNAM BME BETA-MERCAPTOETHANOL HETNAM CIT CITRIC ACID FORMUL 3 BME 4(C2 H6 O S) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 9 HOH *60(H2 O) HELIX 1 1 GLY A 24 GLY A 24 5 1 HELIX 2 2 ALA A 26 VAL A 29 5 4 HELIX 3 3 TYR A 44 LEU A 52 1 9 HELIX 4 4 GLY A 68 LEU A 74 1 7 HELIX 5 5 GLU A 76 GLY A 78 5 3 HELIX 6 6 MET A 90 ARG A 101 1 12 HELIX 7 7 GLU A 104 LYS A 109 1 6 HELIX 8 8 ASN A 116 MET A 118 5 3 HELIX 9 9 THR A 119 VAL A 124 1 6 HELIX 10 10 SER A 141 LEU A 145 5 5 HELIX 11 11 GLU A 154 LEU A 159 1 6 HELIX 12 12 ASN A 161 SER A 164 5 4 HELIX 13 13 ASN A 178 GLY A 186 1 9 HELIX 14 14 CYS A 248 PHE A 260 1 13 HELIX 15 15 VAL B 29 ILE B 34 1 6 HELIX 16 16 THR B 41 HIS B 55 1 15 HELIX 17 17 GLY B 68 GLU B 77 1 10 HELIX 18 18 SER B 87 ARG B 101 1 15 HELIX 19 19 GLU B 104 LYS B 109 1 6 HELIX 20 20 ASN B 116 MET B 118 5 3 HELIX 21 21 THR B 119 VAL B 124 1 6 HELIX 22 22 SER B 141 LEU B 145 5 5 HELIX 23 23 GLN B 152 LEU B 159 1 8 HELIX 24 24 ASN B 161 SER B 164 5 4 HELIX 25 25 ASN B 178 GLY B 186 1 9 HELIX 26 26 CYS B 248 PHE B 260 1 13 SHEET 1 A 8 VAL A 111 GLU A 114 0 SHEET 2 A 8 THR A 82 ASP A 85 1 N SER A 83 O VAL A 111 SHEET 3 A 8 LEU A 61 VAL A 63 1 N ASP A 62 O THR A 82 SHEET 4 A 8 PHE A 132 CYS A 137 1 O ILE A 136 N VAL A 63 SHEET 5 A 8 VAL A 166 ARG A 177 1 O ARG A 167 N PHE A 132 SHEET 6 A 8 TYR A 285 LYS A 291 -1 O HIS A 288 N ILE A 174 SHEET 7 A 8 SER A 267 GLY A 270 -1 N LEU A 269 O ILE A 287 SHEET 8 A 8 LYS A 273 PRO A 274 -1 O LYS A 273 N GLY A 270 SHEET 1 B 3 ASP A 203 VAL A 211 0 SHEET 2 B 3 LYS A 214 THR A 223 -1 O MET A 217 N LEU A 209 SHEET 3 B 3 ARG A 241 TYR A 244 -1 O LEU A 242 N LEU A 220 SHEET 1 C 8 VAL B 111 GLU B 114 0 SHEET 2 C 8 SER B 80 ASP B 85 1 N SER B 83 O VAL B 111 SHEET 3 C 8 ARG B 59 VAL B 63 1 N ASP B 62 O THR B 82 SHEET 4 C 8 PHE B 132 CYS B 137 1 O ILE B 136 N VAL B 63 SHEET 5 C 8 VAL B 166 ARG B 177 1 O VAL B 173 N CYS B 137 SHEET 6 C 8 TYR B 285 ARG B 292 -1 O LEU B 290 N LEU B 172 SHEET 7 C 8 CYS B 264 GLY B 270 -1 N LEU B 269 O ILE B 287 SHEET 8 C 8 LYS B 273 PRO B 274 -1 O LYS B 273 N GLY B 270 SHEET 1 D 3 LYS B 202 VAL B 211 0 SHEET 2 D 3 LYS B 214 VAL B 224 -1 O MET B 217 N LEU B 209 SHEET 3 D 3 SER B 238 TYR B 244 -1 O TYR B 244 N VAL B 218 LINK SG CYS A 187 S2 BME A1187 1555 1555 2.06 LINK SG CYS B 187 S2 BME B2187 1555 1555 2.02 LINK SG CYS B 264 S2 BME B2264 1555 1555 2.02 LINK SG CYS B 284 S2 BME B2284 1555 1555 2.07 SITE 1 AC1 6 GLN A 54 GLY A 186 CYS A 187 VAL A 204 SITE 2 AC1 6 THR A 206 ASN A 212 SITE 1 AC2 8 TYR A 33 GLY A 139 ASN A 140 HIS A 144 SITE 2 AC2 8 ASN A 193 TYR A 244 TYR A 285 GLU B 15 SITE 1 AC3 8 ARG B 53 GLN B 54 GLY B 56 GLY B 186 SITE 2 AC3 8 CYS B 187 VAL B 204 THR B 206 ASN B 212 SITE 1 AC4 4 GLN B 257 CYS B 264 GLN B 265 HIS B 266 SITE 1 AC5 2 LYS B 192 CYS B 284 SITE 1 AC6 10 TYR B 33 GLY B 139 ASN B 140 HIS B 144 SITE 2 AC6 10 ASN B 193 TYR B 222 TYR B 244 TYR B 285 SITE 3 AC6 10 HOH B2286 HOH B2320 CRYST1 75.840 83.230 114.880 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008705 0.00000 CONECT 1348 4246 CONECT 3484 4263 CONECT 4002 4267 CONECT 4158 4271 CONECT 4243 4244 4245 CONECT 4244 4243 4246 CONECT 4245 4243 CONECT 4246 1348 4244 CONECT 4247 4248 4249 4250 CONECT 4248 4247 CONECT 4249 4247 CONECT 4250 4247 4251 CONECT 4251 4250 4252 4253 4257 CONECT 4252 4251 CONECT 4253 4251 4254 CONECT 4254 4253 4255 4256 CONECT 4255 4254 CONECT 4256 4254 CONECT 4257 4251 4258 4259 CONECT 4258 4257 CONECT 4259 4257 CONECT 4260 4261 4262 CONECT 4261 4260 4263 CONECT 4262 4260 CONECT 4263 3484 4261 CONECT 4264 4265 4266 CONECT 4265 4264 4267 CONECT 4266 4264 CONECT 4267 4002 4265 CONECT 4268 4269 4270 CONECT 4269 4268 4271 CONECT 4270 4268 CONECT 4271 4158 4269 CONECT 4272 4273 4274 4275 CONECT 4273 4272 CONECT 4274 4272 CONECT 4275 4272 4276 CONECT 4276 4275 4277 4278 4282 CONECT 4277 4276 CONECT 4278 4276 4279 CONECT 4279 4278 4280 4281 CONECT 4280 4279 CONECT 4281 4279 CONECT 4282 4276 4283 4284 CONECT 4283 4282 CONECT 4284 4282 MASTER 489 0 6 26 22 0 11 6 4342 2 46 46 END