HEADER HYDROLASE/DNA 21-OCT-03 1R7M TITLE THE HOMING ENDONUCLEASE I-SCEI BOUND TO ITS DNA RECOGNITION REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*AP*GP*GP COMPND 3 *GP*TP*AP*AP*TP*AP*C)-3'; COMPND 4 CHAIN: C, E; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DNA-TOP STRAND; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*TP*GP*TP*TP*AP*TP*CP*CP COMPND 9 *CP*TP*AP*GP*CP*GP*T)-3'; COMPND 10 CHAIN: D, F; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA-BOTTOM STRAND; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: INTRON-ENCODED ENDONUCLEASE I-SCEI; COMPND 15 CHAIN: A, B; COMPND 16 SYNONYM: 21S RRNA INTRON MATURASE, HOMING ENDONUCLEASE OMEGA; COMPND 17 EC: 3.1.-.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: SECY; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PSCM525 KEYWDS PROTEIN-DNA COMPLEX, ENDONUCLEASE, LAGLIDADG, BETA-SADDLE, HYDROLASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.M.MOURE,F.S.GIMBLE,F.A.QUIOCHO REVDAT 3 14-FEB-24 1R7M 1 REMARK LINK REVDAT 2 24-FEB-09 1R7M 1 VERSN REVDAT 1 26-OCT-04 1R7M 0 JRNL AUTH C.M.MOURE,F.S.GIMBLE,F.A.QUIOCHO JRNL TITL THE CRYSTAL STRUCTURE OF THE GENE TARGETING HOMING JRNL TITL 2 ENDONUCLEASE I-SCEI REVEALS THE ORIGINS OF ITS TARGET SITE JRNL TITL 3 SPECIFICITY JRNL REF J.MOL.BIOL. V. 334 685 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14636596 JRNL DOI 10.1016/J.JMB.2003.09.068 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1468062.870 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 36759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5461 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 246 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3708 REMARK 3 NUCLEIC ACID ATOMS : 1968 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.88000 REMARK 3 B22 (A**2) : 5.84000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.110 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 41.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.05500 REMARK 200 FOR SHELL : 18.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, SODIUM ACETATE, CALCIUM REMARK 280 CHLORIDE, POSTASSIUM CHLORIDE, PH 4.7, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 2 BIOLOGICAL ASSEMBLIES PER ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC C 1 REMARK 465 DG D 1 REMARK 465 DC E 1 REMARK 465 DG F 1 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 226 REMARK 465 THR A 227 REMARK 465 ILE A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 GLU A 231 REMARK 465 THR A 232 REMARK 465 PHE A 233 REMARK 465 LEU A 234 REMARK 465 LYS A 235 REMARK 465 MET B 301 REMARK 465 LYS B 302 REMARK 465 ASN B 526 REMARK 465 THR B 527 REMARK 465 ILE B 528 REMARK 465 SER B 529 REMARK 465 SER B 530 REMARK 465 GLU B 531 REMARK 465 THR B 532 REMARK 465 PHE B 533 REMARK 465 LEU B 534 REMARK 465 LYS B 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 22 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 10 15.15 -66.28 REMARK 500 ASN A 15 33.86 -86.25 REMARK 500 ASP A 51 -144.27 -89.84 REMARK 500 GLU A 52 57.79 -114.99 REMARK 500 GLU A 61 117.02 -169.61 REMARK 500 ASP A 144 -70.57 -87.14 REMARK 500 THR A 164 36.63 -98.82 REMARK 500 GLN A 219 18.30 -66.91 REMARK 500 MET B 310 44.58 -61.12 REMARK 500 ASN B 311 0.89 -175.29 REMARK 500 ASN B 315 48.08 -98.92 REMARK 500 ASN B 420 75.86 56.76 REMARK 500 LYS B 421 122.63 162.43 REMARK 500 GLN B 519 18.35 -65.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 14 OP1 REMARK 620 2 DC D 17 OP1 100.0 REMARK 620 3 HOH D 30 O 86.8 75.4 REMARK 620 4 ASP A 44 OD2 82.9 118.4 164.0 REMARK 620 5 ASP A 144 O 169.2 90.7 95.8 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 15 OP1 REMARK 620 2 HOH C 315 O 86.3 REMARK 620 3 DT D 16 OP1 99.4 163.7 REMARK 620 4 HOH D 31 O 105.1 91.9 101.2 REMARK 620 5 HOH D 41 O 102.0 78.8 85.0 150.6 REMARK 620 6 HOH D 47 O 161.2 75.1 97.8 78.7 72.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 15 OP2 REMARK 620 2 DC D 17 OP2 110.1 REMARK 620 3 GLY A 43 O 67.3 152.6 REMARK 620 4 ASP A 44 OD1 74.0 82.6 70.4 REMARK 620 5 ASP A 145 OD1 146.9 90.8 82.3 84.1 REMARK 620 6 HOH A 327 O 105.9 103.7 103.0 173.1 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 536 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA E 14 OP1 REMARK 620 2 DC F 17 OP1 111.0 REMARK 620 3 HOH F 27 O 100.9 78.4 REMARK 620 4 HOH B 85 O 78.8 164.3 87.8 REMARK 620 5 ASP B 344 OD2 83.7 117.8 160.6 74.6 REMARK 620 6 ASP B 444 O 160.4 86.7 90.5 85.9 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC E 15 OP1 REMARK 620 2 HOH E 310 O 67.5 REMARK 620 3 HOH E 311 O 97.6 70.3 REMARK 620 4 DT F 16 OP1 101.6 168.7 115.3 REMARK 620 5 HOH F 30 O 102.1 95.6 149.1 83.9 REMARK 620 6 HOH F 35 O 148.9 81.7 74.1 109.1 76.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 537 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC E 15 OP2 REMARK 620 2 DC F 17 OP2 103.3 REMARK 620 3 HOH B 23 O 104.1 139.4 REMARK 620 4 HOH B 141 O 101.0 102.5 43.0 REMARK 620 5 GLY B 343 O 70.8 157.8 61.6 99.6 REMARK 620 6 ASP B 344 OD1 81.1 77.8 135.8 177.7 80.1 REMARK 620 7 ASP B 445 OD1 155.4 89.7 77.2 96.4 89.3 81.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 536 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 537 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 306 DBREF 1R7M A 1 235 UNP P03882 SCE1_YEAST 1 235 DBREF 1R7M B 301 535 UNP P03882 SCE1_YEAST 1 235 DBREF 1R7M C 1 25 PDB 1R7M 1R7M 1 25 DBREF 1R7M D 1 25 PDB 1R7M 1R7M 1 25 DBREF 1R7M E 1 25 PDB 1R7M 1R7M 1 25 DBREF 1R7M F 1 25 PDB 1R7M 1R7M 1 25 SEQRES 1 C 25 DC DA DC DG DC DT DA DG DG DG DA DT DA SEQRES 2 C 25 DA DC DA DG DG DG DT DA DA DT DA DC SEQRES 1 D 25 DG DG DT DA DT DT DA DC DC DC DT DG DT SEQRES 2 D 25 DT DA DT DC DC DC DT DA DG DC DG DT SEQRES 1 E 25 DC DA DC DG DC DT DA DG DG DG DA DT DA SEQRES 2 E 25 DA DC DA DG DG DG DT DA DA DT DA DC SEQRES 1 F 25 DG DG DT DA DT DT DA DC DC DC DT DG DT SEQRES 2 F 25 DT DA DT DC DC DC DT DA DG DC DG DT SEQRES 1 A 235 MET LYS ASN ILE LYS LYS ASN GLN VAL MET ASN LEU GLY SEQRES 2 A 235 PRO ASN SER LYS LEU LEU LYS GLU TYR LYS SER GLN LEU SEQRES 3 A 235 ILE GLU LEU ASN ILE GLU GLN PHE GLU ALA GLY ILE GLY SEQRES 4 A 235 LEU ILE LEU GLY ASP ALA TYR ILE ARG SER ARG ASP GLU SEQRES 5 A 235 GLY LYS THR TYR CYS MET GLN PHE GLU TRP LYS ASN LYS SEQRES 6 A 235 ALA TYR MET ASP HIS VAL CYS LEU LEU TYR ASP GLN TRP SEQRES 7 A 235 VAL LEU SER PRO PRO HIS LYS LYS GLU ARG VAL ASN HIS SEQRES 8 A 235 LEU GLY ASN LEU VAL ILE THR TRP GLY ALA GLN THR PHE SEQRES 9 A 235 LYS HIS GLN ALA PHE ASN LYS LEU ALA ASN LEU PHE ILE SEQRES 10 A 235 VAL ASN ASN LYS LYS THR ILE PRO ASN ASN LEU VAL GLU SEQRES 11 A 235 ASN TYR LEU THR PRO MET SER LEU ALA TYR TRP PHE MET SEQRES 12 A 235 ASP ASP GLY GLY LYS TRP ASP TYR ASN LYS ASN SER THR SEQRES 13 A 235 ASN LYS SER ILE VAL LEU ASN THR GLN SER PHE THR PHE SEQRES 14 A 235 GLU GLU VAL GLU TYR LEU VAL LYS GLY LEU ARG ASN LYS SEQRES 15 A 235 PHE GLN LEU ASN CYS TYR VAL LYS ILE ASN LYS ASN LYS SEQRES 16 A 235 PRO ILE ILE TYR ILE ASP SER MET SER TYR LEU ILE PHE SEQRES 17 A 235 TYR ASN LEU ILE LYS PRO TYR LEU ILE PRO GLN MET MET SEQRES 18 A 235 TYR LYS LEU PRO ASN THR ILE SER SER GLU THR PHE LEU SEQRES 19 A 235 LYS SEQRES 1 B 235 MET LYS ASN ILE LYS LYS ASN GLN VAL MET ASN LEU GLY SEQRES 2 B 235 PRO ASN SER LYS LEU LEU LYS GLU TYR LYS SER GLN LEU SEQRES 3 B 235 ILE GLU LEU ASN ILE GLU GLN PHE GLU ALA GLY ILE GLY SEQRES 4 B 235 LEU ILE LEU GLY ASP ALA TYR ILE ARG SER ARG ASP GLU SEQRES 5 B 235 GLY LYS THR TYR CYS MET GLN PHE GLU TRP LYS ASN LYS SEQRES 6 B 235 ALA TYR MET ASP HIS VAL CYS LEU LEU TYR ASP GLN TRP SEQRES 7 B 235 VAL LEU SER PRO PRO HIS LYS LYS GLU ARG VAL ASN HIS SEQRES 8 B 235 LEU GLY ASN LEU VAL ILE THR TRP GLY ALA GLN THR PHE SEQRES 9 B 235 LYS HIS GLN ALA PHE ASN LYS LEU ALA ASN LEU PHE ILE SEQRES 10 B 235 VAL ASN ASN LYS LYS THR ILE PRO ASN ASN LEU VAL GLU SEQRES 11 B 235 ASN TYR LEU THR PRO MET SER LEU ALA TYR TRP PHE MET SEQRES 12 B 235 ASP ASP GLY GLY LYS TRP ASP TYR ASN LYS ASN SER THR SEQRES 13 B 235 ASN LYS SER ILE VAL LEU ASN THR GLN SER PHE THR PHE SEQRES 14 B 235 GLU GLU VAL GLU TYR LEU VAL LYS GLY LEU ARG ASN LYS SEQRES 15 B 235 PHE GLN LEU ASN CYS TYR VAL LYS ILE ASN LYS ASN LYS SEQRES 16 B 235 PRO ILE ILE TYR ILE ASP SER MET SER TYR LEU ILE PHE SEQRES 17 B 235 TYR ASN LEU ILE LYS PRO TYR LEU ILE PRO GLN MET MET SEQRES 18 B 235 TYR LYS LEU PRO ASN THR ILE SER SER GLU THR PHE LEU SEQRES 19 B 235 LYS HET CA C 305 1 HET CA E 302 1 HET CA A 304 1 HET CA A 306 1 HET CA B 536 1 HET CA B 537 1 HETNAM CA CALCIUM ION FORMUL 7 CA 6(CA 2+) FORMUL 13 HOH *201(H2 O) HELIX 1 1 LYS A 5 MET A 10 1 6 HELIX 2 2 SER A 16 LEU A 26 1 11 HELIX 3 3 ASN A 30 GLY A 43 1 14 HELIX 4 4 ASN A 64 TYR A 75 1 12 HELIX 5 5 ASP A 76 VAL A 79 5 4 HELIX 6 6 HIS A 106 ALA A 108 5 3 HELIX 7 7 PHE A 109 PHE A 116 1 8 HELIX 8 8 ASN A 127 LEU A 133 1 7 HELIX 9 9 THR A 134 ASP A 145 1 12 HELIX 10 10 THR A 168 GLN A 184 1 17 HELIX 11 11 SER A 204 LYS A 213 1 10 HELIX 12 12 ILE A 217 LEU A 224 5 8 HELIX 13 13 LYS B 305 MET B 310 1 6 HELIX 14 14 SER B 316 LEU B 326 1 11 HELIX 15 15 ASN B 330 GLY B 343 1 14 HELIX 16 16 ASN B 364 TYR B 375 1 12 HELIX 17 17 ASP B 376 VAL B 379 5 4 HELIX 18 18 HIS B 406 ALA B 408 5 3 HELIX 19 19 PHE B 409 ILE B 417 1 9 HELIX 20 20 ASN B 427 LEU B 433 1 7 HELIX 21 21 THR B 434 ASP B 445 1 12 HELIX 22 22 THR B 468 GLN B 484 1 17 HELIX 23 23 SER B 504 LYS B 513 1 10 HELIX 24 24 PRO B 514 LEU B 516 5 3 HELIX 25 25 ILE B 517 LEU B 524 5 8 SHEET 1 A 4 TYR A 46 ARG A 48 0 SHEET 2 A 4 CYS A 57 TRP A 62 -1 O GLN A 59 N TYR A 46 SHEET 3 A 4 LEU A 95 GLN A 102 -1 O ALA A 101 N PHE A 60 SHEET 4 A 4 HIS A 84 VAL A 89 -1 N ARG A 88 O VAL A 96 SHEET 1 B 2 ILE A 117 VAL A 118 0 SHEET 2 B 2 LYS A 121 LYS A 122 -1 O LYS A 121 N VAL A 118 SHEET 1 C 4 GLY A 146 LYS A 148 0 SHEET 2 C 4 ILE A 160 LEU A 162 -1 O VAL A 161 N GLY A 147 SHEET 3 C 4 LYS A 195 ILE A 200 -1 O ILE A 200 N ILE A 160 SHEET 4 C 4 CYS A 187 ASN A 192 -1 N TYR A 188 O TYR A 199 SHEET 1 D 4 TYR B 346 ARG B 348 0 SHEET 2 D 4 CYS B 357 TRP B 362 -1 O GLN B 359 N TYR B 346 SHEET 3 D 4 LEU B 395 GLN B 402 -1 O ALA B 401 N PHE B 360 SHEET 4 D 4 HIS B 384 VAL B 389 -1 N LYS B 386 O THR B 398 SHEET 1 E 4 GLY B 446 LYS B 448 0 SHEET 2 E 4 ILE B 460 LEU B 462 -1 O VAL B 461 N GLY B 447 SHEET 3 E 4 LYS B 495 ILE B 500 -1 O ILE B 500 N ILE B 460 SHEET 4 E 4 CYS B 487 ASN B 492 -1 N TYR B 488 O TYR B 499 LINK OP1 DA C 14 CA CA A 304 1555 1555 2.45 LINK OP1 DC C 15 CA CA C 305 1555 1555 2.31 LINK OP2 DC C 15 CA CA A 306 1555 1555 2.34 LINK CA CA C 305 O HOH C 315 1555 1555 2.32 LINK CA CA C 305 OP1 DT D 16 1555 1555 2.29 LINK CA CA C 305 O HOH D 31 1555 1555 2.29 LINK CA CA C 305 O HOH D 41 1555 1555 2.27 LINK CA CA C 305 O HOH D 47 1555 1555 2.38 LINK OP1 DC D 17 CA CA A 304 1555 1555 2.46 LINK OP2 DC D 17 CA CA A 306 1555 1555 2.49 LINK O HOH D 30 CA CA A 304 1555 1555 2.41 LINK OP1 DA E 14 CA CA B 536 1555 1555 2.29 LINK OP1 DC E 15 CA CA E 302 1555 1555 2.36 LINK OP2 DC E 15 CA CA B 537 1555 1555 2.21 LINK CA CA E 302 O HOH E 310 1555 1555 2.45 LINK CA CA E 302 O HOH E 311 1555 1555 2.65 LINK CA CA E 302 OP1 DT F 16 1555 1555 2.15 LINK CA CA E 302 O HOH F 30 1555 1555 2.14 LINK CA CA E 302 O HOH F 35 1555 1555 2.84 LINK OP1 DC F 17 CA CA B 536 1555 1555 2.22 LINK OP2 DC F 17 CA CA B 537 1555 1555 2.50 LINK O HOH F 27 CA CA B 536 1555 1555 2.27 LINK O GLY A 43 CA CA A 306 1555 1555 2.46 LINK OD2 ASP A 44 CA CA A 304 1555 1555 2.30 LINK OD1 ASP A 44 CA CA A 306 1555 1555 2.47 LINK O ASP A 144 CA CA A 304 1555 1555 2.41 LINK OD1 ASP A 145 CA CA A 306 1555 1555 2.24 LINK CA CA A 306 O HOH A 327 1555 1555 2.21 LINK O HOH B 23 CA CA B 537 1555 1555 3.28 LINK O HOH B 85 CA CA B 536 1555 1555 2.47 LINK O HOH B 141 CA CA B 537 1555 1555 2.12 LINK O GLY B 343 CA CA B 537 1555 1555 2.68 LINK OD2 ASP B 344 CA CA B 536 1555 1555 2.40 LINK OD1 ASP B 344 CA CA B 537 1555 1555 2.51 LINK O ASP B 444 CA CA B 536 1555 1555 2.55 LINK OD1 ASP B 445 CA CA B 537 1555 1555 2.20 SITE 1 AC1 6 HOH B 85 ASP B 344 ASP B 444 DA E 14 SITE 2 AC1 6 DC F 17 HOH F 27 SITE 1 AC2 7 DC E 15 HOH E 310 HOH E 311 DA F 15 SITE 2 AC2 7 DT F 16 HOH F 30 HOH F 35 SITE 1 AC3 6 HOH B 141 GLY B 343 ASP B 344 ASP B 445 SITE 2 AC3 6 DC E 15 DC F 17 SITE 1 AC4 5 ASP A 44 ASP A 144 DA C 14 DC D 17 SITE 2 AC4 5 HOH D 30 SITE 1 AC5 7 DC C 15 HOH C 315 DA D 15 DT D 16 SITE 2 AC5 7 HOH D 31 HOH D 41 HOH D 47 SITE 1 AC6 6 GLY A 43 ASP A 44 ASP A 145 HOH A 327 SITE 2 AC6 6 DC C 15 DC D 17 CRYST1 80.600 90.700 115.300 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008673 0.00000