HEADER HYDROLASE 22-OCT-03 1R7O TITLE CRYSTAL STRUCTURE OF APO-MANNANASE 26A FROM PSUDOMONAS CELLULOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNANASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MANNANASE 26A; COMPND 5 EC: 3.2.1.78; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 GENE: MAN26A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDB1 KEYWDS ENDO BETA1-4 MANNANASE, MANNANASE 26A, MANNAN DEGRADING ENZYME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY,M.C.J.WILCE REVDAT 3 25-OCT-23 1R7O 1 REMARK LINK REVDAT 2 24-FEB-09 1R7O 1 VERSN REVDAT 1 11-NOV-03 1R7O 0 JRNL AUTH A.J.OAKLEY,M.C.J.WILCE JRNL TITL STRUCTURAL INVESTIGATION OF MANNANASE 26A FROM PSEUDOMONAS JRNL TITL 2 CELLULOSA REVEALS AN INDUCED FIT MECHANISM AND A JRNL TITL 3 NON-SUBSTRATE LIGAND BINDING SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2836 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1510 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.1940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3020 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2602 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4130 ; 1.346 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6045 ; 0.803 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 5.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3462 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 662 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 668 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3197 ; 0.242 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1648 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 412 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.164 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 0.562 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2929 ; 1.040 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 1.480 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1201 ; 2.515 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1R7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : TRIANGULAR MONOCHROMATOR AND REMARK 200 BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40381 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 91.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1J9Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.41500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.70750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 29 REMARK 465 HIS A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 LYS A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 ARG A 39 REMARK 465 ALA A 40 REMARK 465 ASP A 41 REMARK 465 ASN A 362 REMARK 465 ALA A 363 REMARK 465 PRO A 364 REMARK 465 GLN A 365 REMARK 465 GLY A 366 REMARK 465 VAL A 367 REMARK 465 PRO A 368 REMARK 465 GLY A 369 REMARK 465 PRO A 370 REMARK 465 ASN A 371 REMARK 465 GLY A 372 REMARK 465 THR A 373 REMARK 465 GLN A 374 REMARK 465 VAL A 375 REMARK 465 PRO A 376 REMARK 465 HIS A 377 REMARK 465 TYR A 378 REMARK 465 TRP A 379 REMARK 465 VAL A 380 REMARK 465 PRO A 381 REMARK 465 ALA A 382 REMARK 465 ASN A 383 REMARK 465 ARG A 384 REMARK 465 PRO A 385 REMARK 465 GLU A 386 REMARK 465 ASN A 387 REMARK 465 ILE A 421 REMARK 465 VAL A 422 REMARK 465 LYS A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2228 O HOH A 2516 2.01 REMARK 500 O HOH A 2501 O HOH A 2516 2.04 REMARK 500 O ARG A 324 O HOH A 2264 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 170 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 283 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 115 -51.89 -130.39 REMARK 500 SER A 255 88.31 -150.91 REMARK 500 SER A 255 81.47 -157.08 REMARK 500 ASN A 389 -1.79 72.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 HIS A 71 NE2 91.2 REMARK 620 3 GLU A 239 OE2 97.9 97.0 REMARK 620 4 HOH A2108 O 173.5 89.9 88.3 REMARK 620 5 HOH A2270 O 83.8 97.3 165.5 89.6 REMARK 620 6 HOH A2387 O 88.2 164.5 98.4 89.1 67.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 ASP A 111 OD2 106.6 REMARK 620 3 GLU A 121 OE1 91.0 104.5 REMARK 620 4 GLU A 121 OE2 126.6 122.1 58.6 REMARK 620 5 HOH A2501 O 116.7 98.1 137.3 78.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 208 NH1 REMARK 620 2 HIS A 211 ND1 115.0 REMARK 620 3 ASP A 283 OD1 120.1 99.8 REMARK 620 4 GLU A 320 OE2 107.3 95.2 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 211 ND1 REMARK 620 2 GLU A 212 OE2 132.1 REMARK 620 3 ASP A 283 OD1 114.1 102.4 REMARK 620 4 GLU A 320 OE2 83.0 127.2 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD2 REMARK 620 2 HOH A2121 O 93.0 REMARK 620 3 HOH A2192 O 91.8 92.7 REMARK 620 4 HOH A2196 O 176.8 85.5 91.0 REMARK 620 5 HOH A2218 O 89.1 177.5 88.6 92.4 REMARK 620 6 HOH A2329 O 86.7 92.6 174.5 90.6 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J9Y RELATED DB: PDB REMARK 900 THIS ENTRY IS A REASESSMENT OF STRUCTURE 1J9Y DBREF 1R7O A 29 423 UNP P49424 MANA_PSEFL 29 423 SEQRES 1 A 395 ASN HIS ALA ALA ASN LYS SER SER ALA SER ARG ALA ASP SEQRES 2 A 395 VAL LYS PRO VAL THR VAL LYS LEU VAL ASP SER GLN ALA SEQRES 3 A 395 THR MET GLU THR ARG SER LEU PHE ALA PHE MET GLN GLU SEQRES 4 A 395 GLN ARG ARG HIS SER ILE MET PHE GLY HIS GLN HIS GLU SEQRES 5 A 395 THR THR GLN GLY LEU THR ILE THR ARG THR ASP GLY THR SEQRES 6 A 395 GLN SER ASP THR PHE ASN ALA VAL GLY ASP PHE ALA ALA SEQRES 7 A 395 VAL TYR GLY TRP ASP THR LEU SER ILE VAL ALA PRO LYS SEQRES 8 A 395 ALA GLU GLY ASP ILE VAL ALA GLN VAL LYS LYS ALA TYR SEQRES 9 A 395 ALA ARG GLY GLY ILE ILE THR VAL SER SER HIS PHE ASP SEQRES 10 A 395 ASN PRO LYS THR ASP THR GLN LYS GLY VAL TRP PRO VAL SEQRES 11 A 395 GLY THR SER TRP ASP GLN THR PRO ALA VAL VAL ASP SER SEQRES 12 A 395 LEU PRO GLY GLY ALA TYR ASN PRO VAL LEU ASN GLY TYR SEQRES 13 A 395 LEU ASP GLN VAL ALA GLU TRP ALA ASN ASN LEU LYS ASP SEQRES 14 A 395 GLU GLN GLY ARG LEU ILE PRO VAL ILE PHE ARG LEU TYR SEQRES 15 A 395 HIS GLU ASN THR GLY SER TRP PHE TRP TRP GLY ASP LYS SEQRES 16 A 395 GLN SER THR PRO GLU GLN TYR LYS GLN LEU PHE ARG TYR SEQRES 17 A 395 SER VAL GLU TYR LEU ARG ASP VAL LYS GLY VAL ARG ASN SEQRES 18 A 395 PHE LEU TYR ALA TYR SER PRO ASN ASN PHE TRP ASP VAL SEQRES 19 A 395 THR GLU ALA ASN TYR LEU GLU ARG TYR PRO GLY ASP GLU SEQRES 20 A 395 TRP VAL ASP VAL LEU GLY PHE ASP THR TYR GLY PRO VAL SEQRES 21 A 395 ALA ASP ASN ALA ASP TRP PHE ARG ASN VAL VAL ALA ASN SEQRES 22 A 395 ALA ALA LEU VAL ALA ARG MET ALA GLU ALA ARG GLY LYS SEQRES 23 A 395 ILE PRO VAL ILE SER GLU ILE GLY ILE ARG ALA PRO ASP SEQRES 24 A 395 ILE GLU ALA GLY LEU TYR ASP ASN GLN TRP TYR ARG LYS SEQRES 25 A 395 LEU ILE SER GLY LEU LYS ALA ASP PRO ASP ALA ARG GLU SEQRES 26 A 395 ILE ALA PHE LEU LEU VAL TRP ARG ASN ALA PRO GLN GLY SEQRES 27 A 395 VAL PRO GLY PRO ASN GLY THR GLN VAL PRO HIS TYR TRP SEQRES 28 A 395 VAL PRO ALA ASN ARG PRO GLU ASN ILE ASN ASN GLY THR SEQRES 29 A 395 LEU GLU ASP PHE GLN ALA PHE TYR ALA ASP GLU PHE THR SEQRES 30 A 395 ALA PHE ASN ARG ASP ILE GLU GLN VAL TYR GLN ARG PRO SEQRES 31 A 395 THR LEU ILE VAL LYS HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET ZN A1004 2 HET SO4 A2001 5 HET MES A2002 12 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 ZN 4(ZN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 MES C6 H13 N O4 S FORMUL 8 HOH *521(H2 O) HELIX 1 1 THR A 55 ARG A 69 1 15 HELIX 2 2 SER A 95 GLY A 102 1 8 HELIX 3 3 LEU A 113 ILE A 115 5 3 HELIX 4 4 ILE A 124 ARG A 134 1 11 HELIX 5 5 THR A 149 LYS A 153 5 5 HELIX 6 6 VAL A 168 LEU A 172 5 5 HELIX 7 7 TYR A 177 ASN A 194 1 18 HELIX 8 8 THR A 226 VAL A 244 1 19 HELIX 9 9 THR A 263 GLU A 269 1 7 HELIX 10 10 ASN A 291 GLY A 313 1 23 HELIX 11 11 ARG A 324 ALA A 330 1 7 HELIX 12 12 GLN A 336 ASP A 348 1 13 HELIX 13 13 ASP A 350 ILE A 354 5 5 HELIX 14 14 GLY A 391 ASP A 402 1 12 HELIX 15 15 PHE A 407 ILE A 411 5 5 SHEET 1 A 2 VAL A 45 THR A 46 0 SHEET 2 A 2 THR A 419 LEU A 420 1 O LEU A 420 N VAL A 45 SHEET 1 B10 ASP A 283 GLY A 286 0 SHEET 2 B10 ILE A 318 ILE A 323 1 O GLU A 320 N THR A 284 SHEET 3 B10 PHE A 356 VAL A 359 1 O PHE A 356 N ILE A 318 SHEET 4 B10 ILE A 73 GLN A 78 1 N GLY A 76 O VAL A 359 SHEET 5 B10 VAL A 107 ASP A 111 1 O GLY A 109 N HIS A 77 SHEET 6 B10 ILE A 137 SER A 141 1 O ILE A 137 N TYR A 108 SHEET 7 B10 VAL A 205 ARG A 208 1 O ARG A 208 N VAL A 140 SHEET 8 B10 PHE A 250 TYR A 254 1 O LEU A 251 N PHE A 207 SHEET 9 B10 VAL A 279 LEU A 280 1 O VAL A 279 N TYR A 254 SHEET 10 B10 ILE A 315 PRO A 316 1 O ILE A 315 N LEU A 280 SHEET 1 C 5 ASP A 283 GLY A 286 0 SHEET 2 C 5 ILE A 318 ILE A 323 1 O GLU A 320 N THR A 284 SHEET 3 C 5 PHE A 356 VAL A 359 1 O PHE A 356 N ILE A 318 SHEET 4 C 5 ILE A 73 GLN A 78 1 N GLY A 76 O VAL A 359 SHEET 5 C 5 THR A 405 ALA A 406 1 O ALA A 406 N ILE A 73 LINK OE2 GLU A 67 ZN ZN A1001 1555 1555 2.10 LINK NE2 HIS A 71 ZN ZN A1001 1555 1555 2.05 LINK NE2 HIS A 79 ZN ZN A1003 1555 1555 2.13 LINK OD2 ASP A 111 ZN ZN A1003 1555 1555 1.89 LINK OE1 GLU A 121 ZN ZN A1003 1555 1555 2.41 LINK OE2 GLU A 121 ZN ZN A1003 1555 1555 1.95 LINK NH1 ARG A 208 ZN A ZN A1004 1555 1555 2.18 LINK ND1 HIS A 211 ZN B ZN A1004 1555 1555 1.94 LINK ND1 HIS A 211 ZN A ZN A1004 1555 1555 2.19 LINK OE2 GLU A 212 ZN B ZN A1004 1555 1555 1.99 LINK OD2 ASP A 222 ZN ZN A1002 1555 1555 2.10 LINK OE2 GLU A 239 ZN ZN A1001 3555 1555 1.95 LINK OD1 ASP A 283 ZN B ZN A1004 1555 1555 1.68 LINK OD1 ASP A 283 ZN A ZN A1004 1555 1555 1.76 LINK OE2 GLU A 320 ZN B ZN A1004 1555 1555 2.57 LINK OE2 GLU A 320 ZN A ZN A1004 1555 1555 1.90 LINK ZN ZN A1001 O HOH A2108 1555 1555 2.26 LINK ZN ZN A1001 O HOH A2270 1555 1555 2.15 LINK ZN ZN A1001 O HOH A2387 1555 3555 2.19 LINK ZN ZN A1002 O HOH A2121 1555 1555 2.08 LINK ZN ZN A1002 O HOH A2192 1555 1555 2.14 LINK ZN ZN A1002 O HOH A2196 1555 1555 2.12 LINK ZN ZN A1002 O HOH A2218 1555 1555 2.31 LINK ZN ZN A1002 O HOH A2329 1555 1555 2.27 LINK ZN ZN A1003 O HOH A2501 1555 1555 1.95 CISPEP 1 ALA A 117 PRO A 118 0 5.20 CISPEP 2 TRP A 156 PRO A 157 0 6.61 SITE 1 AC1 6 GLU A 67 HIS A 71 GLU A 239 HOH A2108 SITE 2 AC1 6 HOH A2270 HOH A2387 SITE 1 AC2 6 ASP A 222 HOH A2121 HOH A2192 HOH A2196 SITE 2 AC2 6 HOH A2218 HOH A2329 SITE 1 AC3 4 HIS A 79 ASP A 111 GLU A 121 HOH A2501 SITE 1 AC4 5 ARG A 208 HIS A 211 GLU A 212 ASP A 283 SITE 2 AC4 5 GLU A 320 SITE 1 AC5 6 PHE A 259 TRP A 260 ASP A 261 HOH A2341 SITE 2 AC5 6 HOH A2377 HOH A2494 SITE 1 AC6 8 TYR A 132 ALA A 133 GLU A 198 GLN A 199 SITE 2 AC6 8 TYR A 415 GLN A 416 HOH A2055 HOH A2379 CRYST1 93.240 93.240 54.830 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018238 0.00000