data_1R8O # _entry.id 1R8O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1R8O RCSB RCSB020574 WWPDB D_1000020574 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1R8N _pdbx_database_related.details 'The Crystal Structure of the Kunitz (STI) Type Inhibitor from Seeds of Delonix regia' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R8O _pdbx_database_status.recvd_initial_deposition_date 2003-10-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Krauchenco, S.' 1 'Nagem, R.A.P.' 2 'da Silva, J.A.' 3 'Marangoni, S.' 4 'Polikarpov, I.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Three-dimensional structure of an unusual Kunitz (STI) type trypsin inhibitor from Copaifera langsdorffii.' Biochimie 86 167 172 2004 BICMBE FR 0300-9084 0466 ? 15134830 10.1016/j.biochi.2004.03.004 1 'Crystallization and preliminary X-ray diffraction analysis of a novel tryspin inhibitor from seeds of Copaifera langsdorffii' 'Acta Crystallogr.,Sect.D' 57 1316 1318 2001 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444901011131 2 'Biochemical characterization and N-terminal sequences of two new trypsin inhibitors from Copaifera langsdorffii seeds' 'J.PROTEIN CHEM.' 20 1 7 2001 JPCHD2 UK 0277-8033 0935 ? ? 10.1023/A:1011053002001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Krauchenco, S.' 1 primary 'Nagem, R.A.P.' 2 primary 'Da Silva, J.A.' 3 primary 'Marangoni, S.' 4 primary 'Polikarpov, I.' 5 1 'Krauchenco, S.' 6 1 'Silva, J.A.' 7 1 'Nagem, R.A.P.' 8 1 'Brando Neto, J.R.' 9 1 'Forrer, V.P.' 10 1 'Carmona e Ferreira, R.' 11 1 'Macedo, M.L.R.' 12 1 'Novello, J.C.' 13 1 'Marangoni, S.' 14 1 'Polikarpov, I.' 15 2 'da Silva, J.A.' 16 2 'Macedo, M.L.R.' 17 2 'Novello, J.C.' 18 2 'Marangoni, S.' 19 # _cell.entry_id 1R8O _cell.length_a 58.710 _cell.length_b 58.710 _cell.length_c 93.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1R8O _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Kunitz trypsin inhibitor' 10129.670 1 ? ? 'residues 1-96' ? 2 polymer nat 'Kunitz trypsin inhibitor' 7902.113 1 ? ? 'residues 97-167' ? 3 water nat water 18.015 182 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 STI 2 STI # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;RLVDTDGKPIENDGAEYYILPSVRGKGGGLVLAKSGGEKCPLSVVQSPSELSNGLPVRFKASPRSKYISVGMLLGIEVIE SPECAPKPSMWSVKSG ; ;RLVDTDGKPIENDGAEYYILPSVRGKGGGLVLAKSGGEKCPLSVVQSPSELSNGLPVRFKASPRSKYISVGMLLGIEVIE SPECAPKPSMWSVKSG ; A ? 2 'polypeptide(L)' no no WKLPSVTVGNPKVSVFGGPFKIEEGKSGYKDVYSSSKGRDLDDGIEVNKKKEKRLVVKDGNPFIIRFKKSG WKLPSVTVGNPKVSVFGGPFKIEEGKSGYKDVYSSSKGRDLDDGIEVNKKKEKRLVVKDGNPFIIRFKKSG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 LEU n 1 3 VAL n 1 4 ASP n 1 5 THR n 1 6 ASP n 1 7 GLY n 1 8 LYS n 1 9 PRO n 1 10 ILE n 1 11 GLU n 1 12 ASN n 1 13 ASP n 1 14 GLY n 1 15 ALA n 1 16 GLU n 1 17 TYR n 1 18 TYR n 1 19 ILE n 1 20 LEU n 1 21 PRO n 1 22 SER n 1 23 VAL n 1 24 ARG n 1 25 GLY n 1 26 LYS n 1 27 GLY n 1 28 GLY n 1 29 GLY n 1 30 LEU n 1 31 VAL n 1 32 LEU n 1 33 ALA n 1 34 LYS n 1 35 SER n 1 36 GLY n 1 37 GLY n 1 38 GLU n 1 39 LYS n 1 40 CYS n 1 41 PRO n 1 42 LEU n 1 43 SER n 1 44 VAL n 1 45 VAL n 1 46 GLN n 1 47 SER n 1 48 PRO n 1 49 SER n 1 50 GLU n 1 51 LEU n 1 52 SER n 1 53 ASN n 1 54 GLY n 1 55 LEU n 1 56 PRO n 1 57 VAL n 1 58 ARG n 1 59 PHE n 1 60 LYS n 1 61 ALA n 1 62 SER n 1 63 PRO n 1 64 ARG n 1 65 SER n 1 66 LYS n 1 67 TYR n 1 68 ILE n 1 69 SER n 1 70 VAL n 1 71 GLY n 1 72 MET n 1 73 LEU n 1 74 LEU n 1 75 GLY n 1 76 ILE n 1 77 GLU n 1 78 VAL n 1 79 ILE n 1 80 GLU n 1 81 SER n 1 82 PRO n 1 83 GLU n 1 84 CYS n 1 85 ALA n 1 86 PRO n 1 87 LYS n 1 88 PRO n 1 89 SER n 1 90 MET n 1 91 TRP n 1 92 SER n 1 93 VAL n 1 94 LYS n 1 95 SER n 1 96 GLY n 2 1 TRP n 2 2 LYS n 2 3 LEU n 2 4 PRO n 2 5 SER n 2 6 VAL n 2 7 THR n 2 8 VAL n 2 9 GLY n 2 10 ASN n 2 11 PRO n 2 12 LYS n 2 13 VAL n 2 14 SER n 2 15 VAL n 2 16 PHE n 2 17 GLY n 2 18 GLY n 2 19 PRO n 2 20 PHE n 2 21 LYS n 2 22 ILE n 2 23 GLU n 2 24 GLU n 2 25 GLY n 2 26 LYS n 2 27 SER n 2 28 GLY n 2 29 TYR n 2 30 LYS n 2 31 ASP n 2 32 VAL n 2 33 TYR n 2 34 SER n 2 35 SER n 2 36 SER n 2 37 LYS n 2 38 GLY n 2 39 ARG n 2 40 ASP n 2 41 LEU n 2 42 ASP n 2 43 ASP n 2 44 GLY n 2 45 ILE n 2 46 GLU n 2 47 VAL n 2 48 ASN n 2 49 LYS n 2 50 LYS n 2 51 LYS n 2 52 GLU n 2 53 LYS n 2 54 ARG n 2 55 LEU n 2 56 VAL n 2 57 VAL n 2 58 LYS n 2 59 ASP n 2 60 GLY n 2 61 ASN n 2 62 PRO n 2 63 PHE n 2 64 ILE n 2 65 ILE n 2 66 ARG n 2 67 PHE n 2 68 LYS n 2 69 LYS n 2 70 SER n 2 71 GLY n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Copaifera langsdorffii' 280048 Copaifera ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Copaifera langsdorffii' 280048 Copaifera ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP P84144_COPLA P84144 1 1 ? ? 2 UNP P84145_COPLA P84145 2 1 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1R8O A 1 ? 96 ? P84144 1 ? 96 ? 1 96 2 2 1R8O B 1 ? 71 ? P84145 1 ? 71 ? 97 167 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1R8O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.05 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.3 _exptl_crystal_grow.pdbx_details '25% PEG4000 in 0.1M sodium acetate buffer, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 3 100 ? 1 1,2,3 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' MARRESEARCH 2000-09-04 ? 2 'IMAGE PLATE' MARRESEARCH 2000-09-15 ? 3 'IMAGE PLATE' MARRESEARCH 2000-09-18 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'triangular bent crystal monochromator' 'SINGLE WAVELENGTH' x-ray 2 1 M 'triangular bent crystal monochromator' 'SINGLE WAVELENGTH' x-ray 3 1 M 'triangular bent crystal monochromator' 'SINGLE WAVELENGTH' x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'LNLS BEAMLINE D03B-MX1' LNLS D03B-MX1 ? 1.54 2 SYNCHROTRON 'LNLS BEAMLINE D03B-MX1' LNLS D03B-MX1 ? 1.54 3 SYNCHROTRON 'LNLS BEAMLINE D03B-MX1' LNLS D03B-MX1 ? 1.54 # _reflns.entry_id 1R8O _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.83 _reflns.d_resolution_low 25.28 _reflns.number_all 15027 _reflns.number_obs 14387 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.6 _reflns.B_iso_Wilson_estimate 14.2 _reflns.pdbx_redundancy 8.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2,3 # _reflns_shell.d_res_high 1.83 _reflns_shell.d_res_low 1.87 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.508 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 14387 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2,3 # _refine.entry_id 1R8O _refine.ls_number_reflns_obs 14387 _refine.ls_number_reflns_all 15027 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.28 _refine.ls_d_res_high 1.83 _refine.ls_percent_reflns_obs 95.70 _refine.ls_R_factor_obs 0.17 _refine.ls_R_factor_all 0.17 _refine.ls_R_factor_R_work 0.16844 _refine.ls_R_factor_R_free 0.21237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 703 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 13.229 _refine.aniso_B[1][1] 0.21 _refine.aniso_B[2][2] 0.21 _refine.aniso_B[3][3] -0.41 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'SIR QUICK CRIO-SOAKING METHOD' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.137 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.080 _refine.overall_SU_B 2.543 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1R8O _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.16 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1267 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 182 _refine_hist.number_atoms_total 1449 _refine_hist.d_res_high 1.83 _refine_hist.d_res_low 25.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 1293 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.734 2.006 ? 1736 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.559 5.000 ? 165 'X-RAY DIFFRACTION' ? r_chiral_restr 0.134 0.200 ? 186 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 950 'X-RAY DIFFRACTION' ? r_nbd_refined 0.229 0.200 ? 583 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.256 0.200 ? 145 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.396 0.200 ? 69 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.464 0.200 ? 15 'X-RAY DIFFRACTION' ? r_mcbond_it 1.064 1.500 ? 827 'X-RAY DIFFRACTION' ? r_mcangle_it 1.885 2.000 ? 1332 'X-RAY DIFFRACTION' ? r_scbond_it 3.052 3.000 ? 466 'X-RAY DIFFRACTION' ? r_scangle_it 4.823 4.500 ? 404 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all 20 1.83 1.92 874 0.247 87.7 0.267 0.031 . 74 1594 . . 'X-RAY DIFFRACTION' . 20 1.92 2.02 . 0.246 93.1 0.244 0.026 . 91 1729 . . 'X-RAY DIFFRACTION' . 20 2.02 2.14 . 0.235 96.9 0.251 0.027 . 84 1775 . . 'X-RAY DIFFRACTION' . 20 2.14 2.31 . 0.24 97.9 0.226 0.023 . 95 1815 . . 'X-RAY DIFFRACTION' . 20 2.31 2.54 . 0.231 96.5 0.256 0.027 . 87 1787 . . 'X-RAY DIFFRACTION' . 20 2.54 2.91 . 0.231 95.8 0.256 0.028 . 82 1805 . . 'X-RAY DIFFRACTION' . 20 2.91 3.66 . 200. 98.2 0.2 0.022 . 84 1881 . . 'X-RAY DIFFRACTION' . 20 3.66 25.28 . 0.2 98.8 0.211 0.020 . 106 2001 . . 'X-RAY DIFFRACTION' . # _struct.entry_id 1R8O _struct.title 'Crystal structure of an unusual Kunitz-type trypsin inhibitor from Copaifera langsdorffii seeds' _struct.pdbx_descriptor 'Kunitz trypsin inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R8O _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text 'Kunitz (STI) trypsin inhibitor, beta-trefoil fold, Copaifera langsdorffii, HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 84 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 40 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 84 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.004 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 87 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 87 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 88 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 88 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.42 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 17 ? PRO A 21 ? TYR A 17 PRO A 21 A 2 ILE B 65 ? LYS B 69 ? ILE B 161 LYS B 165 B 1 LEU A 30 ? ALA A 33 ? LEU A 30 ALA A 33 B 2 SER A 43 ? GLN A 46 ? SER A 43 GLN A 46 B 3 LYS B 53 ? VAL B 57 ? LYS B 149 VAL B 153 B 4 ASP B 40 ? VAL B 47 ? ASP B 136 VAL B 143 B 5 GLY B 28 ? SER B 34 ? GLY B 124 SER B 130 B 6 PHE B 20 ? GLY B 25 ? PHE B 116 GLY B 121 C 1 VAL A 57 ? LYS A 60 ? VAL A 57 LYS A 60 C 2 GLY A 75 ? VAL A 78 ? GLY A 75 VAL A 78 C 3 SER A 89 ? MET A 90 ? SER A 89 MET A 90 D 1 SER A 92 ? LYS A 94 ? SER A 92 LYS A 94 D 2 SER B 5 ? THR B 7 ? SER B 101 THR B 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 20 ? N LEU A 20 O ARG B 66 ? O ARG B 162 B 1 2 N VAL A 31 ? N VAL A 31 O VAL A 45 ? O VAL A 45 B 2 3 N GLN A 46 ? N GLN A 46 O LYS B 53 ? O LYS B 149 B 3 4 O VAL B 56 ? O VAL B 152 N GLY B 44 ? N GLY B 140 B 4 5 O LEU B 41 ? O LEU B 137 N TYR B 33 ? N TYR B 129 B 5 6 O LYS B 30 ? O LYS B 126 N GLU B 23 ? N GLU B 119 C 1 2 N LYS A 60 ? N LYS A 60 O GLY A 75 ? O GLY A 75 C 2 3 N VAL A 78 ? N VAL A 78 O SER A 89 ? O SER A 89 D 1 2 N SER A 92 ? N SER A 92 O THR B 7 ? O THR B 103 # _database_PDB_matrix.entry_id 1R8O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1R8O _atom_sites.fract_transf_matrix[1][1] 0.017033 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017033 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010667 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 TRP 91 91 91 TRP TRP A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLY 96 96 96 GLY GLY A . n B 2 1 TRP 1 97 97 TRP TRP B . n B 2 2 LYS 2 98 98 LYS LYS B . n B 2 3 LEU 3 99 99 LEU LEU B . n B 2 4 PRO 4 100 100 PRO PRO B . n B 2 5 SER 5 101 101 SER SER B . n B 2 6 VAL 6 102 102 VAL VAL B . n B 2 7 THR 7 103 103 THR THR B . n B 2 8 VAL 8 104 104 VAL VAL B . n B 2 9 GLY 9 105 105 GLY GLY B . n B 2 10 ASN 10 106 106 ASN ASN B . n B 2 11 PRO 11 107 107 PRO PRO B . n B 2 12 LYS 12 108 108 LYS LYS B . n B 2 13 VAL 13 109 109 VAL VAL B . n B 2 14 SER 14 110 110 SER SER B . n B 2 15 VAL 15 111 111 VAL VAL B . n B 2 16 PHE 16 112 112 PHE PHE B . n B 2 17 GLY 17 113 113 GLY GLY B . n B 2 18 GLY 18 114 114 GLY GLY B . n B 2 19 PRO 19 115 115 PRO PRO B . n B 2 20 PHE 20 116 116 PHE PHE B . n B 2 21 LYS 21 117 117 LYS LYS B . n B 2 22 ILE 22 118 118 ILE ILE B . n B 2 23 GLU 23 119 119 GLU GLU B . n B 2 24 GLU 24 120 120 GLU GLU B . n B 2 25 GLY 25 121 121 GLY GLY B . n B 2 26 LYS 26 122 122 LYS LYS B . n B 2 27 SER 27 123 123 SER SER B . n B 2 28 GLY 28 124 124 GLY GLY B . n B 2 29 TYR 29 125 125 TYR TYR B . n B 2 30 LYS 30 126 126 LYS LYS B . n B 2 31 ASP 31 127 127 ASP ASP B . n B 2 32 VAL 32 128 128 VAL VAL B . n B 2 33 TYR 33 129 129 TYR TYR B . n B 2 34 SER 34 130 130 SER SER B . n B 2 35 SER 35 131 131 SER SER B . n B 2 36 SER 36 132 132 SER SER B . n B 2 37 LYS 37 133 133 LYS LYS B . n B 2 38 GLY 38 134 134 GLY GLY B . n B 2 39 ARG 39 135 135 ARG ARG B . n B 2 40 ASP 40 136 136 ASP ASP B . n B 2 41 LEU 41 137 137 LEU LEU B . n B 2 42 ASP 42 138 138 ASP ASP B . n B 2 43 ASP 43 139 139 ASP ASP B . n B 2 44 GLY 44 140 140 GLY GLY B . n B 2 45 ILE 45 141 141 ILE ILE B . n B 2 46 GLU 46 142 142 GLU GLU B . n B 2 47 VAL 47 143 143 VAL VAL B . n B 2 48 ASN 48 144 144 ASN ASN B . n B 2 49 LYS 49 145 145 LYS LYS B . n B 2 50 LYS 50 146 146 LYS LYS B . n B 2 51 LYS 51 147 147 LYS LYS B . n B 2 52 GLU 52 148 148 GLU GLU B . n B 2 53 LYS 53 149 149 LYS LYS B . n B 2 54 ARG 54 150 150 ARG ARG B . n B 2 55 LEU 55 151 151 LEU LEU B . n B 2 56 VAL 56 152 152 VAL VAL B . n B 2 57 VAL 57 153 153 VAL VAL B . n B 2 58 LYS 58 154 154 LYS LYS B . n B 2 59 ASP 59 155 155 ASP ASP B . n B 2 60 GLY 60 156 156 GLY GLY B . n B 2 61 ASN 61 157 157 ASN ASN B . n B 2 62 PRO 62 158 158 PRO PRO B . n B 2 63 PHE 63 159 159 PHE PHE B . n B 2 64 ILE 64 160 160 ILE ILE B . n B 2 65 ILE 65 161 161 ILE ILE B . n B 2 66 ARG 66 162 162 ARG ARG B . n B 2 67 PHE 67 163 163 PHE PHE B . n B 2 68 LYS 68 164 164 LYS LYS B . n B 2 69 LYS 69 165 165 LYS LYS B . n B 2 70 SER 70 166 166 SER SER B . n B 2 71 GLY 71 167 167 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 97 1 HOH HOH A . C 3 HOH 2 98 2 HOH HOH A . C 3 HOH 3 99 3 HOH HOH A . C 3 HOH 4 100 5 HOH HOH A . C 3 HOH 5 101 6 HOH HOH A . C 3 HOH 6 102 7 HOH HOH A . C 3 HOH 7 103 8 HOH HOH A . C 3 HOH 8 104 9 HOH HOH A . C 3 HOH 9 105 10 HOH HOH A . C 3 HOH 10 106 11 HOH HOH A . C 3 HOH 11 107 12 HOH HOH A . C 3 HOH 12 108 15 HOH HOH A . C 3 HOH 13 109 16 HOH HOH A . C 3 HOH 14 110 17 HOH HOH A . C 3 HOH 15 111 18 HOH HOH A . C 3 HOH 16 112 19 HOH HOH A . C 3 HOH 17 113 20 HOH HOH A . C 3 HOH 18 114 21 HOH HOH A . C 3 HOH 19 115 28 HOH HOH A . C 3 HOH 20 116 31 HOH HOH A . C 3 HOH 21 117 32 HOH HOH A . C 3 HOH 22 118 33 HOH HOH A . C 3 HOH 23 119 34 HOH HOH A . C 3 HOH 24 120 35 HOH HOH A . C 3 HOH 25 121 38 HOH HOH A . C 3 HOH 26 122 41 HOH HOH A . C 3 HOH 27 123 42 HOH HOH A . C 3 HOH 28 124 43 HOH HOH A . C 3 HOH 29 125 47 HOH HOH A . C 3 HOH 30 126 48 HOH HOH A . C 3 HOH 31 127 49 HOH HOH A . C 3 HOH 32 128 50 HOH HOH A . C 3 HOH 33 129 55 HOH HOH A . C 3 HOH 34 130 58 HOH HOH A . C 3 HOH 35 131 59 HOH HOH A . C 3 HOH 36 132 62 HOH HOH A . C 3 HOH 37 133 65 HOH HOH A . C 3 HOH 38 134 67 HOH HOH A . C 3 HOH 39 135 68 HOH HOH A . C 3 HOH 40 136 71 HOH HOH A . C 3 HOH 41 137 72 HOH HOH A . C 3 HOH 42 138 75 HOH HOH A . C 3 HOH 43 139 76 HOH HOH A . C 3 HOH 44 140 77 HOH HOH A . C 3 HOH 45 141 79 HOH HOH A . C 3 HOH 46 142 80 HOH HOH A . C 3 HOH 47 143 82 HOH HOH A . C 3 HOH 48 144 85 HOH HOH A . C 3 HOH 49 145 87 HOH HOH A . C 3 HOH 50 146 89 HOH HOH A . C 3 HOH 51 147 90 HOH HOH A . C 3 HOH 52 148 92 HOH HOH A . C 3 HOH 53 149 94 HOH HOH A . C 3 HOH 54 150 95 HOH HOH A . C 3 HOH 55 151 97 HOH HOH A . C 3 HOH 56 152 98 HOH HOH A . C 3 HOH 57 153 101 HOH HOH A . C 3 HOH 58 154 103 HOH HOH A . C 3 HOH 59 155 107 HOH HOH A . C 3 HOH 60 156 109 HOH HOH A . C 3 HOH 61 157 112 HOH HOH A . C 3 HOH 62 158 113 HOH HOH A . C 3 HOH 63 159 116 HOH HOH A . C 3 HOH 64 160 118 HOH HOH A . C 3 HOH 65 161 121 HOH HOH A . C 3 HOH 66 162 122 HOH HOH A . C 3 HOH 67 163 124 HOH HOH A . C 3 HOH 68 164 126 HOH HOH A . C 3 HOH 69 165 129 HOH HOH A . C 3 HOH 70 166 130 HOH HOH A . C 3 HOH 71 167 131 HOH HOH A . C 3 HOH 72 168 135 HOH HOH A . C 3 HOH 73 169 136 HOH HOH A . C 3 HOH 74 170 141 HOH HOH A . C 3 HOH 75 171 142 HOH HOH A . C 3 HOH 76 172 143 HOH HOH A . C 3 HOH 77 173 144 HOH HOH A . C 3 HOH 78 174 148 HOH HOH A . C 3 HOH 79 175 149 HOH HOH A . C 3 HOH 80 176 150 HOH HOH A . C 3 HOH 81 177 159 HOH HOH A . C 3 HOH 82 178 163 HOH HOH A . C 3 HOH 83 179 165 HOH HOH A . C 3 HOH 84 180 167 HOH HOH A . C 3 HOH 85 181 168 HOH HOH A . C 3 HOH 86 182 169 HOH HOH A . C 3 HOH 87 183 172 HOH HOH A . C 3 HOH 88 184 173 HOH HOH A . C 3 HOH 89 185 174 HOH HOH A . C 3 HOH 90 186 175 HOH HOH A . C 3 HOH 91 187 176 HOH HOH A . C 3 HOH 92 188 179 HOH HOH A . C 3 HOH 93 189 180 HOH HOH A . C 3 HOH 94 190 181 HOH HOH A . D 3 HOH 1 168 4 HOH HOH B . D 3 HOH 2 169 13 HOH HOH B . D 3 HOH 3 170 14 HOH HOH B . D 3 HOH 4 171 22 HOH HOH B . D 3 HOH 5 172 23 HOH HOH B . D 3 HOH 6 173 24 HOH HOH B . D 3 HOH 7 174 25 HOH HOH B . D 3 HOH 8 175 26 HOH HOH B . D 3 HOH 9 176 27 HOH HOH B . D 3 HOH 10 177 29 HOH HOH B . D 3 HOH 11 178 30 HOH HOH B . D 3 HOH 12 179 36 HOH HOH B . D 3 HOH 13 180 37 HOH HOH B . D 3 HOH 14 181 39 HOH HOH B . D 3 HOH 15 182 40 HOH HOH B . D 3 HOH 16 183 44 HOH HOH B . D 3 HOH 17 184 45 HOH HOH B . D 3 HOH 18 185 46 HOH HOH B . D 3 HOH 19 186 51 HOH HOH B . D 3 HOH 20 187 52 HOH HOH B . D 3 HOH 21 188 53 HOH HOH B . D 3 HOH 22 189 54 HOH HOH B . D 3 HOH 23 190 56 HOH HOH B . D 3 HOH 24 191 57 HOH HOH B . D 3 HOH 25 192 60 HOH HOH B . D 3 HOH 26 193 61 HOH HOH B . D 3 HOH 27 194 63 HOH HOH B . D 3 HOH 28 195 64 HOH HOH B . D 3 HOH 29 196 66 HOH HOH B . D 3 HOH 30 197 69 HOH HOH B . D 3 HOH 31 198 70 HOH HOH B . D 3 HOH 32 199 73 HOH HOH B . D 3 HOH 33 200 74 HOH HOH B . D 3 HOH 34 201 78 HOH HOH B . D 3 HOH 35 202 81 HOH HOH B . D 3 HOH 36 203 83 HOH HOH B . D 3 HOH 37 204 84 HOH HOH B . D 3 HOH 38 205 86 HOH HOH B . D 3 HOH 39 206 88 HOH HOH B . D 3 HOH 40 207 91 HOH HOH B . D 3 HOH 41 208 93 HOH HOH B . D 3 HOH 42 209 96 HOH HOH B . D 3 HOH 43 210 99 HOH HOH B . D 3 HOH 44 211 100 HOH HOH B . D 3 HOH 45 212 102 HOH HOH B . D 3 HOH 46 213 104 HOH HOH B . D 3 HOH 47 214 105 HOH HOH B . D 3 HOH 48 215 106 HOH HOH B . D 3 HOH 49 216 108 HOH HOH B . D 3 HOH 50 217 110 HOH HOH B . D 3 HOH 51 218 111 HOH HOH B . D 3 HOH 52 219 114 HOH HOH B . D 3 HOH 53 220 115 HOH HOH B . D 3 HOH 54 221 117 HOH HOH B . D 3 HOH 55 222 119 HOH HOH B . D 3 HOH 56 223 120 HOH HOH B . D 3 HOH 57 224 123 HOH HOH B . D 3 HOH 58 225 125 HOH HOH B . D 3 HOH 59 226 127 HOH HOH B . D 3 HOH 60 227 128 HOH HOH B . D 3 HOH 61 228 132 HOH HOH B . D 3 HOH 62 229 133 HOH HOH B . D 3 HOH 63 230 134 HOH HOH B . D 3 HOH 64 231 137 HOH HOH B . D 3 HOH 65 232 138 HOH HOH B . D 3 HOH 66 233 139 HOH HOH B . D 3 HOH 67 234 140 HOH HOH B . D 3 HOH 68 235 145 HOH HOH B . D 3 HOH 69 236 146 HOH HOH B . D 3 HOH 70 237 147 HOH HOH B . D 3 HOH 71 238 151 HOH HOH B . D 3 HOH 72 239 152 HOH HOH B . D 3 HOH 73 240 153 HOH HOH B . D 3 HOH 74 241 154 HOH HOH B . D 3 HOH 75 242 155 HOH HOH B . D 3 HOH 76 243 156 HOH HOH B . D 3 HOH 77 244 157 HOH HOH B . D 3 HOH 78 245 158 HOH HOH B . D 3 HOH 79 246 160 HOH HOH B . D 3 HOH 80 247 161 HOH HOH B . D 3 HOH 81 248 162 HOH HOH B . D 3 HOH 82 249 164 HOH HOH B . D 3 HOH 83 250 166 HOH HOH B . D 3 HOH 84 251 170 HOH HOH B . D 3 HOH 85 252 171 HOH HOH B . D 3 HOH 86 253 177 HOH HOH B . D 3 HOH 87 254 178 HOH HOH B . D 3 HOH 88 255 182 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4570 ? 1 MORE -27 ? 1 'SSA (A^2)' 8400 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-25 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 22.0830 15.0550 26.2900 0.2169 0.1962 0.2076 -0.0179 -0.0017 -0.0110 1.9574 2.2191 2.2555 0.2012 0.1774 0.4691 -0.0238 -0.0116 0.0353 -0.1000 0.0945 0.0980 0.2637 -0.0235 -0.0392 'X-RAY DIFFRACTION' 2 ? refined 17.5250 11.8680 18.0430 0.1872 0.2004 0.2319 -0.0100 -0.0043 -0.0134 2.3505 2.5197 2.3870 0.1301 0.6963 0.2079 0.0217 -0.0730 0.0513 0.1118 0.0107 0.2222 0.0364 0.0475 -0.0588 'X-RAY DIFFRACTION' 3 ? refined 20.1970 14.3300 21.6110 0.1350 0.1193 0.1587 -0.0151 0.0086 -0.0039 2.5478 2.0010 2.0187 -0.1620 0.5939 0.3117 -0.0169 -0.0046 0.0215 0.0116 0.1109 0.1895 0.0943 -0.0607 0.0031 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 96 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 97 B 167 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 97 A 189 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 B 168 B 255 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.19 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 B ASP 127 ? ? O B HOH 231 ? ? 1.82 2 1 O A HOH 115 ? ? O A HOH 187 ? ? 1.83 3 1 O A HOH 187 ? ? O B HOH 216 ? ? 1.89 4 1 O A HOH 166 ? ? O A HOH 181 ? ? 2.00 5 1 O A HOH 172 ? ? O A HOH 178 ? ? 2.05 6 1 O B HOH 218 ? ? O B HOH 223 ? ? 2.14 7 1 NZ B LYS 147 ? ? O B HOH 235 ? ? 2.16 8 1 O A HOH 188 ? ? O B HOH 251 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NZ B LYS 133 ? ? 1_555 NZ B LYS 133 ? ? 7_555 1.10 2 1 O B HOH 180 ? ? 1_555 O B HOH 217 ? ? 6_455 1.83 3 1 O A HOH 156 ? ? 1_555 O B HOH 245 ? ? 6_555 1.83 4 1 O A HOH 116 ? ? 1_555 O B HOH 252 ? ? 4_555 1.94 5 1 OE1 A GLU 83 ? ? 1_555 NZ B LYS 133 ? ? 6_555 2.05 6 1 CE B LYS 133 ? ? 1_555 NZ B LYS 133 ? ? 7_555 2.12 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLN _pdbx_validate_rmsd_bond.auth_seq_id_1 46 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLN _pdbx_validate_rmsd_bond.auth_seq_id_2 46 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.312 _pdbx_validate_rmsd_bond.bond_target_value 1.521 _pdbx_validate_rmsd_bond.bond_deviation -0.209 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.027 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 31 ? ? -145.40 -157.01 2 1 LYS B 122 ? ? 4.37 95.37 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #