data_1R9K # _entry.id 1R9K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1R9K RCSB RCSB020606 WWPDB D_1000020606 # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 5701 _pdbx_database_related.details 'Chemical shifts' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1R9K _pdbx_database_status.recvd_initial_deposition_date 2003-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Williams, C.' 1 'Galyov, E.E.' 2 'Bagby, S.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution Structure, Backbone Dynamics, and Interaction with Cdc42 of Salmonella Guanine Nucleotide Exchange Factor SopE2(,).' Biochemistry 43 11998 12008 2004 BICHAW US 0006-2960 0033 ? 15379540 10.1021/bi0490744 1 'Biochemical and structural analysis of Salmonella and Burkholderia virulence proteins' 'To be Published' ? ? ? 2003 ? ? ? 0353 ? ? ? 2 ;Assignment of the 1H,13C and 15N resonances of the catalytic domain of guanine nucelotide exchange factor SopE2 from Salmonella dublin ; J.BIOMOL.NMR 26 379 380 2003 JBNME9 NE 0925-2738 0800 ? ? 10.1023/A:1024057108445 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Williams, C.' 1 primary 'Galyov, E.E.' 2 primary 'Bagby, S.' 3 1 'Williams, C.' 4 2 'Williams, C.' 5 2 'Galyov, E.E.' 6 2 'Bagby, S.' 7 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'TypeIII-secreted protein effector: invasion-associated protein' _entity.formula_weight 18585.338 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SopE2 GEF domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GNASEGRAVLTSKTVKDFMLQKLNSLDIKGNASKDPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAA QNAGLPGEIKNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTMPTPQQFQLTI ENIANKYLQNAS ; _entity_poly.pdbx_seq_one_letter_code_can ;GNASEGRAVLTSKTVKDFMLQKLNSLDIKGNASKDPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAA QNAGLPGEIKNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTMPTPQQFQLTI ENIANKYLQNAS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ALA n 1 4 SER n 1 5 GLU n 1 6 GLY n 1 7 ARG n 1 8 ALA n 1 9 VAL n 1 10 LEU n 1 11 THR n 1 12 SER n 1 13 LYS n 1 14 THR n 1 15 VAL n 1 16 LYS n 1 17 ASP n 1 18 PHE n 1 19 MET n 1 20 LEU n 1 21 GLN n 1 22 LYS n 1 23 LEU n 1 24 ASN n 1 25 SER n 1 26 LEU n 1 27 ASP n 1 28 ILE n 1 29 LYS n 1 30 GLY n 1 31 ASN n 1 32 ALA n 1 33 SER n 1 34 LYS n 1 35 ASP n 1 36 PRO n 1 37 ALA n 1 38 TYR n 1 39 ALA n 1 40 ARG n 1 41 GLN n 1 42 THR n 1 43 CYS n 1 44 GLU n 1 45 ALA n 1 46 ILE n 1 47 LEU n 1 48 SER n 1 49 ALA n 1 50 VAL n 1 51 TYR n 1 52 SER n 1 53 ASN n 1 54 ASN n 1 55 LYS n 1 56 ASP n 1 57 GLN n 1 58 CYS n 1 59 CYS n 1 60 LYS n 1 61 LEU n 1 62 LEU n 1 63 ILE n 1 64 SER n 1 65 LYS n 1 66 GLY n 1 67 VAL n 1 68 SER n 1 69 ILE n 1 70 THR n 1 71 PRO n 1 72 PHE n 1 73 LEU n 1 74 LYS n 1 75 GLU n 1 76 ILE n 1 77 GLY n 1 78 GLU n 1 79 ALA n 1 80 ALA n 1 81 GLN n 1 82 ASN n 1 83 ALA n 1 84 GLY n 1 85 LEU n 1 86 PRO n 1 87 GLY n 1 88 GLU n 1 89 ILE n 1 90 LYS n 1 91 ASN n 1 92 GLY n 1 93 VAL n 1 94 PHE n 1 95 THR n 1 96 PRO n 1 97 GLY n 1 98 GLY n 1 99 ALA n 1 100 GLY n 1 101 ALA n 1 102 ASN n 1 103 PRO n 1 104 PHE n 1 105 VAL n 1 106 VAL n 1 107 PRO n 1 108 LEU n 1 109 ILE n 1 110 ALA n 1 111 SER n 1 112 ALA n 1 113 SER n 1 114 ILE n 1 115 LYS n 1 116 TYR n 1 117 PRO n 1 118 HIS n 1 119 MET n 1 120 PHE n 1 121 ILE n 1 122 ASN n 1 123 HIS n 1 124 ASN n 1 125 GLN n 1 126 GLN n 1 127 VAL n 1 128 SER n 1 129 PHE n 1 130 LYS n 1 131 ALA n 1 132 TYR n 1 133 ALA n 1 134 GLU n 1 135 LYS n 1 136 ILE n 1 137 VAL n 1 138 MET n 1 139 LYS n 1 140 GLU n 1 141 VAL n 1 142 THR n 1 143 PRO n 1 144 LEU n 1 145 PHE n 1 146 ASN n 1 147 LYS n 1 148 GLY n 1 149 THR n 1 150 MET n 1 151 PRO n 1 152 THR n 1 153 PRO n 1 154 GLN n 1 155 GLN n 1 156 PHE n 1 157 GLN n 1 158 LEU n 1 159 THR n 1 160 ILE n 1 161 GLU n 1 162 ASN n 1 163 ILE n 1 164 ALA n 1 165 ASN n 1 166 LYS n 1 167 TYR n 1 168 LEU n 1 169 GLN n 1 170 ASN n 1 171 ALA n 1 172 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene sopE2 _entity_src_gen.gene_src_species 'Salmonella typhimurium' _entity_src_gen.gene_src_strain LT2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9KIZ2_SALTY _struct_ref.pdbx_db_accession Q9KIZ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GNASEGRAVLTSKTVKDFMLQKLNSLDIKGNASKDPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAA QNAGLPGEIKNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTMPTPQQFQLTI ENIANKYLQNAS ; _struct_ref.pdbx_align_begin 69 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1R9K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KIZ2 _struct_ref_seq.db_align_beg 69 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 69 _struct_ref_seq.pdbx_auth_seq_align_end 240 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 2 2 '2D NOESY' 2 2 2 '2D TOCSY' 3 1 1 3D_13C-separated_NOESY 4 1 1 3D_15N-separated_NOESY 5 3 3 HNHA # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 7 0 ? K 2 298 ambient 7 0 ? K 3 298 ambient 7 0 ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM SopE2 U-15N,13C; 20mM HEPES buffer; 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '1mM SopE2 unlabelled; 20mM tris buffer; 99.6% D2O' '99.6% D2O' 3 '1mM SopE2 U-15N; 20mM HEPES buffer; 90% H2O, 10% D2O' '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1R9K _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;he structures are based on a total of 3065 restraints, 2682 are NOE-derived distance constraints, 249 dihedral angle restraints,134 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1R9K _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1R9K _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1R9K _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 2.1 processing 'Delaglio et al' 1 SPARKY 3.1 'data analysis' 'Goddard & kneller' 2 XPLOR-NIH 2.06 'structure solution' 'Schwieters et al' 3 XPLOR-NIH 2.06 refinement 'Schwieters et al' 4 # _exptl.entry_id 1R9K _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.density_Matthews ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1R9K _struct.title 'Representative solution structure of the catalytic domain of SopE2' _struct.pdbx_descriptor 'TypeIII-secreted protein effector: invasion-associated protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1R9K _struct_keywords.pdbx_keywords 'CELL INVASION' _struct_keywords.text 'Salmonella, invasion, type III, GEF, SopE, CELL INVASION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? ASP A 27 ? THR A 82 ASP A 95 1 ? 14 HELX_P HELX_P2 2 ASP A 27 ? ASP A 35 ? ASP A 95 ASP A 103 1 ? 9 HELX_P HELX_P3 3 ASP A 35 ? GLY A 66 ? ASP A 103 GLY A 134 1 ? 32 HELX_P HELX_P4 4 SER A 68 ? ALA A 83 ? SER A 136 ALA A 151 1 ? 16 HELX_P HELX_P5 5 PHE A 104 ? TYR A 116 ? PHE A 172 TYR A 184 1 ? 13 HELX_P HELX_P6 6 TYR A 116 ? ILE A 121 ? TYR A 184 ILE A 189 1 ? 6 HELX_P HELX_P7 7 ASN A 124 ? THR A 142 ? ASN A 192 THR A 210 1 ? 19 HELX_P HELX_P8 8 PRO A 143 ? ASN A 146 ? PRO A 211 ASN A 214 5 ? 4 HELX_P HELX_P9 9 THR A 152 ? GLN A 169 ? THR A 220 GLN A 237 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 88 ? ILE A 89 ? GLU A 156 ILE A 157 A 2 PHE A 94 ? THR A 95 ? PHE A 162 THR A 163 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 88 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 156 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id THR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 95 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id THR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 163 # _database_PDB_matrix.entry_id 1R9K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1R9K _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 69 ? ? ? A . n A 1 2 ASN 2 70 ? ? ? A . n A 1 3 ALA 3 71 ? ? ? A . n A 1 4 SER 4 72 ? ? ? A . n A 1 5 GLU 5 73 73 GLU GLU A . n A 1 6 GLY 6 74 74 GLY GLY A . n A 1 7 ARG 7 75 75 ARG ARG A . n A 1 8 ALA 8 76 76 ALA ALA A . n A 1 9 VAL 9 77 77 VAL VAL A . n A 1 10 LEU 10 78 78 LEU LEU A . n A 1 11 THR 11 79 79 THR THR A . n A 1 12 SER 12 80 80 SER SER A . n A 1 13 LYS 13 81 81 LYS LYS A . n A 1 14 THR 14 82 82 THR THR A . n A 1 15 VAL 15 83 83 VAL VAL A . n A 1 16 LYS 16 84 84 LYS LYS A . n A 1 17 ASP 17 85 85 ASP ASP A . n A 1 18 PHE 18 86 86 PHE PHE A . n A 1 19 MET 19 87 87 MET MET A . n A 1 20 LEU 20 88 88 LEU LEU A . n A 1 21 GLN 21 89 89 GLN GLN A . n A 1 22 LYS 22 90 90 LYS LYS A . n A 1 23 LEU 23 91 91 LEU LEU A . n A 1 24 ASN 24 92 92 ASN ASN A . n A 1 25 SER 25 93 93 SER SER A . n A 1 26 LEU 26 94 94 LEU LEU A . n A 1 27 ASP 27 95 95 ASP ASP A . n A 1 28 ILE 28 96 96 ILE ILE A . n A 1 29 LYS 29 97 97 LYS LYS A . n A 1 30 GLY 30 98 98 GLY GLY A . n A 1 31 ASN 31 99 99 ASN ASN A . n A 1 32 ALA 32 100 100 ALA ALA A . n A 1 33 SER 33 101 101 SER SER A . n A 1 34 LYS 34 102 102 LYS LYS A . n A 1 35 ASP 35 103 103 ASP ASP A . n A 1 36 PRO 36 104 104 PRO PRO A . n A 1 37 ALA 37 105 105 ALA ALA A . n A 1 38 TYR 38 106 106 TYR TYR A . n A 1 39 ALA 39 107 107 ALA ALA A . n A 1 40 ARG 40 108 108 ARG ARG A . n A 1 41 GLN 41 109 109 GLN GLN A . n A 1 42 THR 42 110 110 THR THR A . n A 1 43 CYS 43 111 111 CYS CYS A . n A 1 44 GLU 44 112 112 GLU GLU A . n A 1 45 ALA 45 113 113 ALA ALA A . n A 1 46 ILE 46 114 114 ILE ILE A . n A 1 47 LEU 47 115 115 LEU LEU A . n A 1 48 SER 48 116 116 SER SER A . n A 1 49 ALA 49 117 117 ALA ALA A . n A 1 50 VAL 50 118 118 VAL VAL A . n A 1 51 TYR 51 119 119 TYR TYR A . n A 1 52 SER 52 120 120 SER SER A . n A 1 53 ASN 53 121 121 ASN ASN A . n A 1 54 ASN 54 122 122 ASN ASN A . n A 1 55 LYS 55 123 123 LYS LYS A . n A 1 56 ASP 56 124 124 ASP ASP A . n A 1 57 GLN 57 125 125 GLN GLN A . n A 1 58 CYS 58 126 126 CYS CYS A . n A 1 59 CYS 59 127 127 CYS CYS A . n A 1 60 LYS 60 128 128 LYS LYS A . n A 1 61 LEU 61 129 129 LEU LEU A . n A 1 62 LEU 62 130 130 LEU LEU A . n A 1 63 ILE 63 131 131 ILE ILE A . n A 1 64 SER 64 132 132 SER SER A . n A 1 65 LYS 65 133 133 LYS LYS A . n A 1 66 GLY 66 134 134 GLY GLY A . n A 1 67 VAL 67 135 135 VAL VAL A . n A 1 68 SER 68 136 136 SER SER A . n A 1 69 ILE 69 137 137 ILE ILE A . n A 1 70 THR 70 138 138 THR THR A . n A 1 71 PRO 71 139 139 PRO PRO A . n A 1 72 PHE 72 140 140 PHE PHE A . n A 1 73 LEU 73 141 141 LEU LEU A . n A 1 74 LYS 74 142 142 LYS LYS A . n A 1 75 GLU 75 143 143 GLU GLU A . n A 1 76 ILE 76 144 144 ILE ILE A . n A 1 77 GLY 77 145 145 GLY GLY A . n A 1 78 GLU 78 146 146 GLU GLU A . n A 1 79 ALA 79 147 147 ALA ALA A . n A 1 80 ALA 80 148 148 ALA ALA A . n A 1 81 GLN 81 149 149 GLN GLN A . n A 1 82 ASN 82 150 150 ASN ASN A . n A 1 83 ALA 83 151 151 ALA ALA A . n A 1 84 GLY 84 152 152 GLY GLY A . n A 1 85 LEU 85 153 153 LEU LEU A . n A 1 86 PRO 86 154 154 PRO PRO A . n A 1 87 GLY 87 155 155 GLY GLY A . n A 1 88 GLU 88 156 156 GLU GLU A . n A 1 89 ILE 89 157 157 ILE ILE A . n A 1 90 LYS 90 158 158 LYS LYS A . n A 1 91 ASN 91 159 159 ASN ASN A . n A 1 92 GLY 92 160 160 GLY GLY A . n A 1 93 VAL 93 161 161 VAL VAL A . n A 1 94 PHE 94 162 162 PHE PHE A . n A 1 95 THR 95 163 163 THR THR A . n A 1 96 PRO 96 164 164 PRO PRO A . n A 1 97 GLY 97 165 165 GLY GLY A . n A 1 98 GLY 98 166 166 GLY GLY A . n A 1 99 ALA 99 167 167 ALA ALA A . n A 1 100 GLY 100 168 168 GLY GLY A . n A 1 101 ALA 101 169 169 ALA ALA A . n A 1 102 ASN 102 170 170 ASN ASN A . n A 1 103 PRO 103 171 171 PRO PRO A . n A 1 104 PHE 104 172 172 PHE PHE A . n A 1 105 VAL 105 173 173 VAL VAL A . n A 1 106 VAL 106 174 174 VAL VAL A . n A 1 107 PRO 107 175 175 PRO PRO A . n A 1 108 LEU 108 176 176 LEU LEU A . n A 1 109 ILE 109 177 177 ILE ILE A . n A 1 110 ALA 110 178 178 ALA ALA A . n A 1 111 SER 111 179 179 SER SER A . n A 1 112 ALA 112 180 180 ALA ALA A . n A 1 113 SER 113 181 181 SER SER A . n A 1 114 ILE 114 182 182 ILE ILE A . n A 1 115 LYS 115 183 183 LYS LYS A . n A 1 116 TYR 116 184 184 TYR TYR A . n A 1 117 PRO 117 185 185 PRO PRO A . n A 1 118 HIS 118 186 186 HIS HIS A . n A 1 119 MET 119 187 187 MET MET A . n A 1 120 PHE 120 188 188 PHE PHE A . n A 1 121 ILE 121 189 189 ILE ILE A . n A 1 122 ASN 122 190 190 ASN ASN A . n A 1 123 HIS 123 191 191 HIS HIS A . n A 1 124 ASN 124 192 192 ASN ASN A . n A 1 125 GLN 125 193 193 GLN GLN A . n A 1 126 GLN 126 194 194 GLN GLN A . n A 1 127 VAL 127 195 195 VAL VAL A . n A 1 128 SER 128 196 196 SER SER A . n A 1 129 PHE 129 197 197 PHE PHE A . n A 1 130 LYS 130 198 198 LYS LYS A . n A 1 131 ALA 131 199 199 ALA ALA A . n A 1 132 TYR 132 200 200 TYR TYR A . n A 1 133 ALA 133 201 201 ALA ALA A . n A 1 134 GLU 134 202 202 GLU GLU A . n A 1 135 LYS 135 203 203 LYS LYS A . n A 1 136 ILE 136 204 204 ILE ILE A . n A 1 137 VAL 137 205 205 VAL VAL A . n A 1 138 MET 138 206 206 MET MET A . n A 1 139 LYS 139 207 207 LYS LYS A . n A 1 140 GLU 140 208 208 GLU GLU A . n A 1 141 VAL 141 209 209 VAL VAL A . n A 1 142 THR 142 210 210 THR THR A . n A 1 143 PRO 143 211 211 PRO PRO A . n A 1 144 LEU 144 212 212 LEU LEU A . n A 1 145 PHE 145 213 213 PHE PHE A . n A 1 146 ASN 146 214 214 ASN ASN A . n A 1 147 LYS 147 215 215 LYS LYS A . n A 1 148 GLY 148 216 216 GLY GLY A . n A 1 149 THR 149 217 217 THR THR A . n A 1 150 MET 150 218 218 MET MET A . n A 1 151 PRO 151 219 219 PRO PRO A . n A 1 152 THR 152 220 220 THR THR A . n A 1 153 PRO 153 221 221 PRO PRO A . n A 1 154 GLN 154 222 222 GLN GLN A . n A 1 155 GLN 155 223 223 GLN GLN A . n A 1 156 PHE 156 224 224 PHE PHE A . n A 1 157 GLN 157 225 225 GLN GLN A . n A 1 158 LEU 158 226 226 LEU LEU A . n A 1 159 THR 159 227 227 THR THR A . n A 1 160 ILE 160 228 228 ILE ILE A . n A 1 161 GLU 161 229 229 GLU GLU A . n A 1 162 ASN 162 230 230 ASN ASN A . n A 1 163 ILE 163 231 231 ILE ILE A . n A 1 164 ALA 164 232 232 ALA ALA A . n A 1 165 ASN 165 233 233 ASN ASN A . n A 1 166 LYS 166 234 234 LYS LYS A . n A 1 167 TYR 167 235 235 TYR TYR A . n A 1 168 LEU 168 236 236 LEU LEU A . n A 1 169 GLN 169 237 237 GLN GLN A . n A 1 170 ASN 170 238 238 ASN ASN A . n A 1 171 ALA 171 239 239 ALA ALA A . n A 1 172 SER 172 240 240 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-28 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-03-21 5 'Structure model' 1 4 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Other 5 5 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation_author # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 5 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation_author.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 90 ? ? OG A SER 93 ? ? 1.29 2 1 O A VAL 83 ? ? H A MET 87 ? ? 1.30 3 1 HZ2 A LYS 203 ? ? OE1 A GLN 225 ? ? 1.31 4 1 HZ3 A LYS 133 ? ? OG A SER 240 ? ? 1.31 5 1 HZ3 A LYS 158 ? ? OG1 A THR 163 ? ? 1.33 6 1 O A LEU 212 ? ? HZ3 A LYS 215 ? ? 1.35 7 1 O A ASN 121 ? ? H A GLN 125 ? ? 1.36 8 1 HZ2 A LYS 133 ? ? O A LEU 236 ? ? 1.36 9 1 OG A SER 120 ? ? HZ2 A LYS 123 ? ? 1.36 10 1 O A VAL 205 ? ? H A VAL 209 ? ? 1.38 11 1 O A ILE 137 ? ? H A LEU 141 ? ? 1.38 12 1 HZ1 A LYS 102 ? ? OD1 A ASP 103 ? ? 1.39 13 1 O A MET 206 ? ? HG1 A THR 210 ? ? 1.39 14 1 HZ3 A LYS 97 ? ? OE2 A GLU 208 ? ? 1.39 15 1 O A TYR 106 ? ? HG1 A THR 110 ? ? 1.40 16 1 OD1 A ASP 95 ? ? HZ2 A LYS 97 ? ? 1.41 17 1 O A VAL 195 ? ? HZ2 A LYS 198 ? ? 1.41 18 1 HZ1 A LYS 207 ? ? OE1 A GLU 208 ? ? 1.41 19 1 O A GLU 229 ? ? H A ASN 233 ? ? 1.42 20 1 HZ1 A LYS 81 ? ? OD1 A ASP 85 ? ? 1.42 21 1 O A GLN 225 ? ? H A GLU 229 ? ? 1.43 22 1 OE2 A GLU 202 ? ? HZ3 A LYS 203 ? ? 1.44 23 1 O A LEU 129 ? ? HG A SER 132 ? ? 1.45 24 1 HZ3 A LYS 234 ? ? OD1 A ASN 238 ? ? 1.46 25 1 O A ALA 117 ? ? H A ASN 121 ? ? 1.46 26 1 O A ILE 177 ? ? HG A SER 181 ? ? 1.47 27 1 HZ2 A LYS 142 ? ? OE1 A GLU 146 ? ? 1.47 28 1 OE1 A GLU 156 ? ? HZ1 A LYS 158 ? ? 1.47 29 1 HZ1 A LYS 142 ? ? OE2 A GLU 143 ? ? 1.49 30 1 O A VAL 173 ? ? H A ILE 177 ? ? 1.49 31 1 O A GLY 74 ? ? HE A ARG 75 ? ? 1.50 32 1 O A ASN 99 ? ? H A ASP 103 ? ? 1.53 33 1 O A ALA 105 ? ? H A GLN 109 ? ? 1.54 34 1 O A GLN 223 ? ? HG1 A THR 227 ? ? 1.55 35 1 OD1 A ASN 92 ? ? HZ3 A LYS 207 ? ? 1.55 36 1 HD21 A ASN 190 ? ? OE1 A GLN 193 ? ? 1.55 37 1 O A SER 179 ? ? H A LYS 183 ? ? 1.55 38 1 O A GLU 146 ? ? H A ASN 150 ? ? 1.56 39 1 OE2 A GLU 73 ? ? HZ2 A LYS 81 ? ? 1.56 40 1 H A LYS 158 ? ? O A VAL 161 ? ? 1.57 41 1 O A ILE 228 ? ? H A ILE 231 ? ? 1.58 42 1 O A GLU 156 ? ? H A THR 163 ? ? 1.59 43 1 O A PRO 221 ? ? H A GLN 225 ? ? 1.60 44 1 O A ASN 238 ? ? H A SER 240 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 77 ? ? -134.64 -40.69 2 1 LEU A 78 ? ? 36.79 28.82 3 1 THR A 79 ? ? -69.58 -176.61 4 1 SER A 80 ? ? 46.41 75.57 5 1 LYS A 81 ? ? 79.04 91.22 6 1 THR A 82 ? ? -101.11 -60.01 7 1 VAL A 135 ? ? -82.82 -150.03 8 1 LYS A 158 ? ? -139.42 -132.50 9 1 ASN A 159 ? ? -63.30 76.87 10 1 ASN A 170 ? ? 71.32 102.49 11 1 THR A 217 ? ? -148.80 35.15 12 1 GLN A 237 ? ? -68.57 -90.39 13 1 ALA A 239 ? ? 69.15 -51.67 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 75 ? ? 0.310 'SIDE CHAIN' 2 1 ARG A 108 ? ? 0.314 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 69 ? A GLY 1 2 1 Y 1 A ASN 70 ? A ASN 2 3 1 Y 1 A ALA 71 ? A ALA 3 4 1 Y 1 A SER 72 ? A SER 4 #