HEADER CELL INVASION 30-OCT-03 1R9K TITLE REPRESENTATIVE SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF SOPE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPEIII-SECRETED PROTEIN EFFECTOR: INVASION-ASSOCIATED COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SOPE2 GEF DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: SOPE2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS SALMONELLA, INVASION, TYPE III, GEF, SOPE, CELL INVASION EXPDTA SOLUTION NMR AUTHOR C.WILLIAMS,E.E.GALYOV,S.BAGBY REVDAT 5 24-JAN-18 1R9K 1 JRNL REVDAT 4 21-MAR-12 1R9K 1 SCALE1 SCALE2 SCALE3 REVDAT 3 13-JUL-11 1R9K 1 VERSN REVDAT 2 24-FEB-09 1R9K 1 VERSN REVDAT 1 28-SEP-04 1R9K 0 JRNL AUTH C.WILLIAMS,E.E.GALYOV,S.BAGBY JRNL TITL SOLUTION STRUCTURE, BACKBONE DYNAMICS, AND INTERACTION WITH JRNL TITL 2 CDC42 OF SALMONELLA GUANINE NUCLEOTIDE EXCHANGE FACTOR JRNL TITL 3 SOPE2(,). JRNL REF BIOCHEMISTRY V. 43 11998 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15379540 JRNL DOI 10.1021/BI0490744 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.WILLIAMS REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL ANALYSIS OF SALMONELLA AND REMARK 1 TITL 2 BURKHOLDERIA VIRULENCE PROTEINS REMARK 1 REF TO BE PUBLISHED 2003 REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH C.WILLIAMS,E.E.GALYOV,S.BAGBY REMARK 1 TITL ASSIGNMENT OF THE 1H,13C AND 15N RESONANCES OF THE CATALYTIC REMARK 1 TITL 2 DOMAIN OF GUANINE NUCELOTIDE EXCHANGE FACTOR SOPE2 FROM REMARK 1 TITL 3 SALMONELLA DUBLIN REMARK 1 REF J.BIOMOL.NMR V. 26 379 2003 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1024057108445 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, XPLOR-NIH 2.06 REMARK 3 AUTHORS : DELAGLIO ET AL (NMRPIPE), SCHWIETERS ET AL (XPLOR REMARK 3 -NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HE STRUCTURES ARE BASED ON A TOTAL OF 3065 RESTRAINTS, 2682 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 249 DIHEDRAL ANGLE RESTRAINTS,134 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1R9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020606. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7; 7; 7 REMARK 210 IONIC STRENGTH : 0; 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SOPE2 U-15N,13C; 20MM HEPES REMARK 210 BUFFER; 90% H2O, 10% D2O; 1MM REMARK 210 SOPE2 UNLABELLED; 20MM TRIS REMARK 210 BUFFER; 99.6% D2O; 1MM SOPE2 U- REMARK 210 15N; 20MM HEPES BUFFER; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, XPLOR-NIH 2.06 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A 69 REMARK 465 ASN A 70 REMARK 465 ALA A 71 REMARK 465 SER A 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 90 OG SER A 93 1.29 REMARK 500 O VAL A 83 H MET A 87 1.30 REMARK 500 HZ2 LYS A 203 OE1 GLN A 225 1.31 REMARK 500 HZ3 LYS A 133 OG SER A 240 1.31 REMARK 500 HZ3 LYS A 158 OG1 THR A 163 1.33 REMARK 500 O LEU A 212 HZ3 LYS A 215 1.35 REMARK 500 O ASN A 121 H GLN A 125 1.36 REMARK 500 HZ2 LYS A 133 O LEU A 236 1.36 REMARK 500 OG SER A 120 HZ2 LYS A 123 1.36 REMARK 500 O VAL A 205 H VAL A 209 1.38 REMARK 500 O ILE A 137 H LEU A 141 1.38 REMARK 500 HZ1 LYS A 102 OD1 ASP A 103 1.39 REMARK 500 O MET A 206 HG1 THR A 210 1.39 REMARK 500 HZ3 LYS A 97 OE2 GLU A 208 1.39 REMARK 500 O TYR A 106 HG1 THR A 110 1.40 REMARK 500 OD1 ASP A 95 HZ2 LYS A 97 1.41 REMARK 500 O VAL A 195 HZ2 LYS A 198 1.41 REMARK 500 HZ1 LYS A 207 OE1 GLU A 208 1.41 REMARK 500 O GLU A 229 H ASN A 233 1.42 REMARK 500 HZ1 LYS A 81 OD1 ASP A 85 1.42 REMARK 500 O GLN A 225 H GLU A 229 1.43 REMARK 500 OE2 GLU A 202 HZ3 LYS A 203 1.44 REMARK 500 O LEU A 129 HG SER A 132 1.45 REMARK 500 HZ3 LYS A 234 OD1 ASN A 238 1.46 REMARK 500 O ALA A 117 H ASN A 121 1.46 REMARK 500 O ILE A 177 HG SER A 181 1.47 REMARK 500 HZ2 LYS A 142 OE1 GLU A 146 1.47 REMARK 500 OE1 GLU A 156 HZ1 LYS A 158 1.47 REMARK 500 HZ1 LYS A 142 OE2 GLU A 143 1.49 REMARK 500 O VAL A 173 H ILE A 177 1.49 REMARK 500 O GLY A 74 HE ARG A 75 1.50 REMARK 500 O ASN A 99 H ASP A 103 1.53 REMARK 500 O ALA A 105 H GLN A 109 1.54 REMARK 500 O GLN A 223 HG1 THR A 227 1.55 REMARK 500 OD1 ASN A 92 HZ3 LYS A 207 1.55 REMARK 500 HD21 ASN A 190 OE1 GLN A 193 1.55 REMARK 500 O SER A 179 H LYS A 183 1.55 REMARK 500 O GLU A 146 H ASN A 150 1.56 REMARK 500 OE2 GLU A 73 HZ2 LYS A 81 1.56 REMARK 500 H LYS A 158 O VAL A 161 1.57 REMARK 500 O ILE A 228 H ILE A 231 1.58 REMARK 500 O GLU A 156 H THR A 163 1.59 REMARK 500 O PRO A 221 H GLN A 225 1.60 REMARK 500 O ASN A 238 H SER A 240 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 77 -40.69 -134.64 REMARK 500 LEU A 78 28.82 36.79 REMARK 500 THR A 79 -176.61 -69.58 REMARK 500 SER A 80 75.57 46.41 REMARK 500 LYS A 81 91.22 79.04 REMARK 500 THR A 82 -60.01 -101.11 REMARK 500 VAL A 135 -150.03 -82.82 REMARK 500 LYS A 158 -132.50 -139.42 REMARK 500 ASN A 159 76.87 -63.30 REMARK 500 ASN A 170 102.49 71.32 REMARK 500 THR A 217 35.15 -148.80 REMARK 500 GLN A 237 -90.39 -68.57 REMARK 500 ALA A 239 -51.67 69.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 75 0.31 SIDE CHAIN REMARK 500 ARG A 108 0.31 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5701 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS DBREF 1R9K A 69 240 UNP Q9KIZ2 Q9KIZ2_SALTY 69 240 SEQRES 1 A 172 GLY ASN ALA SER GLU GLY ARG ALA VAL LEU THR SER LYS SEQRES 2 A 172 THR VAL LYS ASP PHE MET LEU GLN LYS LEU ASN SER LEU SEQRES 3 A 172 ASP ILE LYS GLY ASN ALA SER LYS ASP PRO ALA TYR ALA SEQRES 4 A 172 ARG GLN THR CYS GLU ALA ILE LEU SER ALA VAL TYR SER SEQRES 5 A 172 ASN ASN LYS ASP GLN CYS CYS LYS LEU LEU ILE SER LYS SEQRES 6 A 172 GLY VAL SER ILE THR PRO PHE LEU LYS GLU ILE GLY GLU SEQRES 7 A 172 ALA ALA GLN ASN ALA GLY LEU PRO GLY GLU ILE LYS ASN SEQRES 8 A 172 GLY VAL PHE THR PRO GLY GLY ALA GLY ALA ASN PRO PHE SEQRES 9 A 172 VAL VAL PRO LEU ILE ALA SER ALA SER ILE LYS TYR PRO SEQRES 10 A 172 HIS MET PHE ILE ASN HIS ASN GLN GLN VAL SER PHE LYS SEQRES 11 A 172 ALA TYR ALA GLU LYS ILE VAL MET LYS GLU VAL THR PRO SEQRES 12 A 172 LEU PHE ASN LYS GLY THR MET PRO THR PRO GLN GLN PHE SEQRES 13 A 172 GLN LEU THR ILE GLU ASN ILE ALA ASN LYS TYR LEU GLN SEQRES 14 A 172 ASN ALA SER HELIX 1 1 THR A 82 ASP A 95 1 14 HELIX 2 2 ASP A 95 ASP A 103 1 9 HELIX 3 3 ASP A 103 GLY A 134 1 32 HELIX 4 4 SER A 136 ALA A 151 1 16 HELIX 5 5 PHE A 172 TYR A 184 1 13 HELIX 6 6 TYR A 184 ILE A 189 1 6 HELIX 7 7 ASN A 192 THR A 210 1 19 HELIX 8 8 PRO A 211 ASN A 214 5 4 HELIX 9 9 THR A 220 GLN A 237 1 18 SHEET 1 A 2 GLU A 156 ILE A 157 0 SHEET 2 A 2 PHE A 162 THR A 163 -1 O THR A 163 N GLU A 156 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000