data_1RBP # _entry.id 1RBP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RBP WWPDB D_1000176000 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RBP _pdbx_database_status.recvd_initial_deposition_date 1990-04-02 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jones, T.A.' 1 'Newcomer, M.E.' 2 'Cowan, S.W.' 3 # _citation.id primary _citation.title 'Crystallographic refinement of human serum retinol binding protein at 2A resolution.' _citation.journal_abbrev Proteins _citation.journal_volume 8 _citation.page_first 44 _citation.page_last 61 _citation.year 1990 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2217163 _citation.pdbx_database_id_DOI 10.1002/prot.340080108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cowan, S.W.' 1 primary 'Newcomer, M.E.' 2 primary 'Jones, T.A.' 3 # _cell.entry_id 1RBP _cell.length_a 45.700 _cell.length_b 48.700 _cell.length_c 76.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RBP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PLASMA RETINOL-BINDING PROTEIN PRECURSOR' 20984.445 1 ? ? ? ? 2 non-polymer syn RETINOL 286.452 1 ? ? ? ? 3 water nat water 18.015 153 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDT EDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELC LARQYRLIVHNGYCDGRSERNL ; _entity_poly.pdbx_seq_one_letter_code_can ;ERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDT EDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELC LARQYRLIVHNGYCDGRSERNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 ASP n 1 4 CYS n 1 5 ARG n 1 6 VAL n 1 7 SER n 1 8 SER n 1 9 PHE n 1 10 ARG n 1 11 VAL n 1 12 LYS n 1 13 GLU n 1 14 ASN n 1 15 PHE n 1 16 ASP n 1 17 LYS n 1 18 ALA n 1 19 ARG n 1 20 PHE n 1 21 SER n 1 22 GLY n 1 23 THR n 1 24 TRP n 1 25 TYR n 1 26 ALA n 1 27 MET n 1 28 ALA n 1 29 LYS n 1 30 LYS n 1 31 ASP n 1 32 PRO n 1 33 GLU n 1 34 GLY n 1 35 LEU n 1 36 PHE n 1 37 LEU n 1 38 GLN n 1 39 ASP n 1 40 ASN n 1 41 ILE n 1 42 VAL n 1 43 ALA n 1 44 GLU n 1 45 PHE n 1 46 SER n 1 47 VAL n 1 48 ASP n 1 49 GLU n 1 50 THR n 1 51 GLY n 1 52 GLN n 1 53 MET n 1 54 SER n 1 55 ALA n 1 56 THR n 1 57 ALA n 1 58 LYS n 1 59 GLY n 1 60 ARG n 1 61 VAL n 1 62 ARG n 1 63 LEU n 1 64 LEU n 1 65 ASN n 1 66 ASN n 1 67 TRP n 1 68 ASP n 1 69 VAL n 1 70 CYS n 1 71 ALA n 1 72 ASP n 1 73 MET n 1 74 VAL n 1 75 GLY n 1 76 THR n 1 77 PHE n 1 78 THR n 1 79 ASP n 1 80 THR n 1 81 GLU n 1 82 ASP n 1 83 PRO n 1 84 ALA n 1 85 LYS n 1 86 PHE n 1 87 LYS n 1 88 MET n 1 89 LYS n 1 90 TYR n 1 91 TRP n 1 92 GLY n 1 93 VAL n 1 94 ALA n 1 95 SER n 1 96 PHE n 1 97 LEU n 1 98 GLN n 1 99 LYS n 1 100 GLY n 1 101 ASN n 1 102 ASP n 1 103 ASP n 1 104 HIS n 1 105 TRP n 1 106 ILE n 1 107 VAL n 1 108 ASP n 1 109 THR n 1 110 ASP n 1 111 TYR n 1 112 ASP n 1 113 THR n 1 114 TYR n 1 115 ALA n 1 116 VAL n 1 117 GLN n 1 118 TYR n 1 119 SER n 1 120 CYS n 1 121 ARG n 1 122 LEU n 1 123 LEU n 1 124 ASN n 1 125 LEU n 1 126 ASP n 1 127 GLY n 1 128 THR n 1 129 CYS n 1 130 ALA n 1 131 ASP n 1 132 SER n 1 133 TYR n 1 134 SER n 1 135 PHE n 1 136 VAL n 1 137 PHE n 1 138 SER n 1 139 ARG n 1 140 ASP n 1 141 PRO n 1 142 ASN n 1 143 GLY n 1 144 LEU n 1 145 PRO n 1 146 PRO n 1 147 GLU n 1 148 ALA n 1 149 GLN n 1 150 LYS n 1 151 ILE n 1 152 VAL n 1 153 ARG n 1 154 GLN n 1 155 ARG n 1 156 GLN n 1 157 GLU n 1 158 GLU n 1 159 LEU n 1 160 CYS n 1 161 LEU n 1 162 ALA n 1 163 ARG n 1 164 GLN n 1 165 TYR n 1 166 ARG n 1 167 LEU n 1 168 ILE n 1 169 VAL n 1 170 HIS n 1 171 ASN n 1 172 GLY n 1 173 TYR n 1 174 CYS n 1 175 ASP n 1 176 GLY n 1 177 ARG n 1 178 SER n 1 179 GLU n 1 180 ARG n 1 181 ASN n 1 182 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RETBP_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P02753 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKWVWALLLLAAWAAAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLL NNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGL PPEAQKIVRQRQEELCLARQYRLIVHNGYCDGRSERNLL ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RBP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02753 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 198 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 182 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RTL non-polymer . RETINOL ? 'C20 H30 O' 286.452 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RBP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.35 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1RBP _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;RESIDUES 1 AND 2 HAVE LITTLE OR NO DENSITY AND, THEREFORE, ARE NOT WELL DEFINED BY THE COORDINATES IN THIS ENTRY. RESIDUES 65 AND 66, WHICH ARE LOCATED IN A LOOP AT THE SURFACE OF THE MOLECULE, ALSO HAVE POOR DENSITY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1408 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 1582 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.1 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1RBP _struct.title 'CRYSTALLOGRAPHIC REFINEMENT OF HUMAN SERUM RETINOL BINDING PROTEIN AT 2 ANGSTROMS RESOLUTION' _struct.pdbx_descriptor 'RETINOL BINDING PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RBP _struct_keywords.pdbx_keywords 'RETINOL TRANSPORT' _struct_keywords.text 'RETINOL TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 G VAL A 6 ? SER A 8 ? VAL A 6 SER A 8 4 'SHORT TURN AT START OF CHAIN' 3 HELX_P HELX_P2 A PRO A 146 ? GLU A 158 ? PRO A 146 GLU A 158 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 160 SG ? ? A CYS 4 A CYS 160 1_555 ? ? ? ? ? ? ? 2.022 ? disulf2 disulf ? ? A CYS 70 SG ? ? ? 1_555 A CYS 174 SG ? ? A CYS 70 A CYS 174 1_555 ? ? ? ? ? ? ? 2.015 ? disulf3 disulf ? ? A CYS 120 SG ? ? ? 1_555 A CYS 129 SG ? ? A CYS 120 A CYS 129 1_555 ? ? ? ? ? ? ? 2.008 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 22 ? LYS A 30 ? GLY A 22 LYS A 30 A 2 ASP A 39 ? VAL A 47 ? ASP A 39 VAL A 47 A 3 MET A 53 ? LEU A 63 ? MET A 53 LEU A 63 A 4 TRP A 67 ? ASP A 79 ? TRP A 67 ASP A 79 A 5 LYS A 85 ? GLY A 92 ? LYS A 85 GLY A 92 A 6 GLY A 100 ? THR A 109 ? GLY A 100 THR A 109 A 7 TYR A 114 ? LEU A 123 ? TYR A 114 LEU A 123 A 8 CYS A 129 ? ARG A 139 ? CYS A 129 ARG A 139 A 9 GLY A 22 ? LYS A 30 ? GLY A 22 LYS A 30 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 22 ? O GLY A 22 N PHE A 45 ? N PHE A 45 A 2 3 O SER A 46 ? O SER A 46 N SER A 54 ? N SER A 54 A 3 4 O VAL A 61 ? O VAL A 61 N VAL A 69 ? N VAL A 69 A 4 5 O THR A 78 ? O THR A 78 N LYS A 87 ? N LYS A 87 A 5 6 O TYR A 90 ? O TYR A 90 N GLY A 100 ? N GLY A 100 A 6 7 O TRP A 105 ? O TRP A 105 N TYR A 118 ? N TYR A 118 A 7 8 O SER A 119 ? O SER A 119 N TYR A 133 ? N TYR A 133 A 8 9 O SER A 134 ? O SER A 134 N LYS A 30 ? N LYS A 30 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details R1 Author ? ? ? ? 9 'RESIDUES INTERACTING WITH THE BETA-IONONE RING OF THE RETINOL' R2 Author ? ? ? ? 7 'RESIDUES INTERACTING WITH THE ISOPRENE TAIL OF THE RETINOL' AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE RTL A 183' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 R1 9 ALA A 43 ? ALA A 43 . ? 1_555 ? 2 R1 9 PHE A 45 ? PHE A 45 . ? 1_555 ? 3 R1 9 ALA A 55 ? ALA A 55 . ? 1_555 ? 4 R1 9 ALA A 57 ? ALA A 57 . ? 1_555 ? 5 R1 9 MET A 73 ? MET A 73 . ? 1_555 ? 6 R1 9 MET A 88 ? MET A 88 . ? 1_555 ? 7 R1 9 HIS A 104 ? HIS A 104 . ? 1_555 ? 8 R1 9 TYR A 133 ? TYR A 133 . ? 1_555 ? 9 R1 9 PHE A 135 ? PHE A 135 . ? 1_555 ? 10 R2 7 LEU A 35 ? LEU A 35 . ? 1_555 ? 11 R2 7 PHE A 36 ? PHE A 36 . ? 1_555 ? 12 R2 7 LEU A 37 ? LEU A 37 . ? 1_555 ? 13 R2 7 VAL A 61 ? VAL A 61 . ? 1_555 ? 14 R2 7 MET A 73 ? MET A 73 . ? 1_555 ? 15 R2 7 TYR A 90 ? TYR A 90 . ? 1_555 ? 16 R2 7 GLN A 98 ? GLN A 98 . ? 1_555 ? 17 AC1 7 LEU A 35 ? LEU A 35 . ? 1_555 ? 18 AC1 7 PHE A 36 ? PHE A 36 . ? 1_555 ? 19 AC1 7 ALA A 55 ? ALA A 55 . ? 1_555 ? 20 AC1 7 VAL A 61 ? VAL A 61 . ? 1_555 ? 21 AC1 7 LEU A 63 ? LEU A 63 . ? 1_555 ? 22 AC1 7 GLN A 98 ? GLN A 98 . ? 1_555 ? 23 AC1 7 HOH C . ? HOH A 313 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RBP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RBP _atom_sites.fract_transf_matrix[1][1] 0.021882 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020534 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013072 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text ;RESIDUES 1 AND 2 HAVE LITTLE OR NO DENSITY AND, THEREFORE, ARE NOT WELL DEFINED BY THE COORDINATES IN THIS ENTRY. RESIDUES 65 AND 66, WHICH ARE LOCATED IN A LOOP AT THE SURFACE OF THE MOLECULE, ALSO HAVE POOR DENSITY. NO DENSITY WAS OBSERVED FOR THE C-TERMINAL RESIDUES 175 - 182. ; # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 CYS 70 70 70 CYS CYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 TRP 91 91 91 TRP TRP A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 TRP 105 105 105 TRP TRP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 CYS 129 129 129 CYS CYS A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 GLN 149 149 149 GLN GLN A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 GLN 154 154 154 GLN GLN A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 GLN 156 156 156 GLN GLN A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 CYS 160 160 160 CYS CYS A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 HIS 170 170 170 HIS HIS A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 TYR 173 173 173 TYR TYR A . n A 1 174 CYS 174 174 174 CYS CYS A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 GLY 176 176 ? ? ? A . n A 1 177 ARG 177 177 ? ? ? A . n A 1 178 SER 178 178 ? ? ? A . n A 1 179 GLU 179 179 ? ? ? A . n A 1 180 ARG 180 180 ? ? ? A . n A 1 181 ASN 181 181 ? ? ? A . n A 1 182 LEU 182 182 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL 1 183 1 RTL RTL A . C 3 HOH 1 184 178 HOH HOH A . C 3 HOH 2 185 179 HOH HOH A . C 3 HOH 3 186 180 HOH HOH A . C 3 HOH 4 187 181 HOH HOH A . C 3 HOH 5 188 182 HOH HOH A . C 3 HOH 6 189 183 HOH HOH A . C 3 HOH 7 190 184 HOH HOH A . C 3 HOH 8 191 185 HOH HOH A . C 3 HOH 9 192 186 HOH HOH A . C 3 HOH 10 193 187 HOH HOH A . C 3 HOH 11 194 188 HOH HOH A . C 3 HOH 12 195 189 HOH HOH A . C 3 HOH 13 196 190 HOH HOH A . C 3 HOH 14 197 191 HOH HOH A . C 3 HOH 15 198 192 HOH HOH A . C 3 HOH 16 199 193 HOH HOH A . C 3 HOH 17 200 194 HOH HOH A . C 3 HOH 18 201 195 HOH HOH A . C 3 HOH 19 202 196 HOH HOH A . C 3 HOH 20 203 197 HOH HOH A . C 3 HOH 21 204 198 HOH HOH A . C 3 HOH 22 205 199 HOH HOH A . C 3 HOH 23 206 200 HOH HOH A . C 3 HOH 24 207 201 HOH HOH A . C 3 HOH 25 208 202 HOH HOH A . C 3 HOH 26 209 203 HOH HOH A . C 3 HOH 27 210 204 HOH HOH A . C 3 HOH 28 211 205 HOH HOH A . C 3 HOH 29 212 206 HOH HOH A . C 3 HOH 30 213 207 HOH HOH A . C 3 HOH 31 214 208 HOH HOH A . C 3 HOH 32 215 209 HOH HOH A . C 3 HOH 33 216 210 HOH HOH A . C 3 HOH 34 217 211 HOH HOH A . C 3 HOH 35 218 212 HOH HOH A . C 3 HOH 36 219 213 HOH HOH A . C 3 HOH 37 220 214 HOH HOH A . C 3 HOH 38 221 215 HOH HOH A . C 3 HOH 39 222 216 HOH HOH A . C 3 HOH 40 223 217 HOH HOH A . C 3 HOH 41 224 218 HOH HOH A . C 3 HOH 42 225 219 HOH HOH A . C 3 HOH 43 226 220 HOH HOH A . C 3 HOH 44 227 221 HOH HOH A . C 3 HOH 45 228 222 HOH HOH A . C 3 HOH 46 229 223 HOH HOH A . C 3 HOH 47 230 224 HOH HOH A . C 3 HOH 48 231 225 HOH HOH A . C 3 HOH 49 232 226 HOH HOH A . C 3 HOH 50 233 227 HOH HOH A . C 3 HOH 51 234 228 HOH HOH A . C 3 HOH 52 235 229 HOH HOH A . C 3 HOH 53 236 230 HOH HOH A . C 3 HOH 54 237 231 HOH HOH A . C 3 HOH 55 238 232 HOH HOH A . C 3 HOH 56 239 233 HOH HOH A . C 3 HOH 57 240 234 HOH HOH A . C 3 HOH 58 241 235 HOH HOH A . C 3 HOH 59 242 236 HOH HOH A . C 3 HOH 60 243 237 HOH HOH A . C 3 HOH 61 244 238 HOH HOH A . C 3 HOH 62 245 239 HOH HOH A . C 3 HOH 63 246 240 HOH HOH A . C 3 HOH 64 247 241 HOH HOH A . C 3 HOH 65 248 242 HOH HOH A . C 3 HOH 66 249 243 HOH HOH A . C 3 HOH 67 250 244 HOH HOH A . C 3 HOH 68 251 245 HOH HOH A . C 3 HOH 69 252 246 HOH HOH A . C 3 HOH 70 253 247 HOH HOH A . C 3 HOH 71 254 248 HOH HOH A . C 3 HOH 72 255 249 HOH HOH A . C 3 HOH 73 256 250 HOH HOH A . C 3 HOH 74 257 251 HOH HOH A . C 3 HOH 75 258 252 HOH HOH A . C 3 HOH 76 259 253 HOH HOH A . C 3 HOH 77 260 254 HOH HOH A . C 3 HOH 78 261 255 HOH HOH A . C 3 HOH 79 262 256 HOH HOH A . C 3 HOH 80 263 257 HOH HOH A . C 3 HOH 81 264 258 HOH HOH A . C 3 HOH 82 265 259 HOH HOH A . C 3 HOH 83 266 260 HOH HOH A . C 3 HOH 84 267 261 HOH HOH A . C 3 HOH 85 268 262 HOH HOH A . C 3 HOH 86 269 263 HOH HOH A . C 3 HOH 87 270 264 HOH HOH A . C 3 HOH 88 271 265 HOH HOH A . C 3 HOH 89 272 266 HOH HOH A . C 3 HOH 90 273 267 HOH HOH A . C 3 HOH 91 274 268 HOH HOH A . C 3 HOH 92 275 269 HOH HOH A . C 3 HOH 93 276 270 HOH HOH A . C 3 HOH 94 277 271 HOH HOH A . C 3 HOH 95 278 272 HOH HOH A . C 3 HOH 96 279 273 HOH HOH A . C 3 HOH 97 280 274 HOH HOH A . C 3 HOH 98 281 275 HOH HOH A . C 3 HOH 99 282 276 HOH HOH A . C 3 HOH 100 283 277 HOH HOH A . C 3 HOH 101 284 278 HOH HOH A . C 3 HOH 102 285 279 HOH HOH A . C 3 HOH 103 286 280 HOH HOH A . C 3 HOH 104 287 281 HOH HOH A . C 3 HOH 105 288 282 HOH HOH A . C 3 HOH 106 289 283 HOH HOH A . C 3 HOH 107 290 284 HOH HOH A . C 3 HOH 108 291 285 HOH HOH A . C 3 HOH 109 292 286 HOH HOH A . C 3 HOH 110 293 287 HOH HOH A . C 3 HOH 111 294 288 HOH HOH A . C 3 HOH 112 295 289 HOH HOH A . C 3 HOH 113 296 290 HOH HOH A . C 3 HOH 114 297 291 HOH HOH A . C 3 HOH 115 298 292 HOH HOH A . C 3 HOH 116 299 293 HOH HOH A . C 3 HOH 117 300 294 HOH HOH A . C 3 HOH 118 301 295 HOH HOH A . C 3 HOH 119 302 296 HOH HOH A . C 3 HOH 120 303 297 HOH HOH A . C 3 HOH 121 304 298 HOH HOH A . C 3 HOH 122 305 299 HOH HOH A . C 3 HOH 123 306 300 HOH HOH A . C 3 HOH 124 307 301 HOH HOH A . C 3 HOH 125 308 302 HOH HOH A . C 3 HOH 126 309 303 HOH HOH A . C 3 HOH 127 310 304 HOH HOH A . C 3 HOH 128 311 305 HOH HOH A . C 3 HOH 129 312 306 HOH HOH A . C 3 HOH 130 313 307 HOH HOH A . C 3 HOH 131 314 308 HOH HOH A . C 3 HOH 132 315 309 HOH HOH A . C 3 HOH 133 316 310 HOH HOH A . C 3 HOH 134 317 311 HOH HOH A . C 3 HOH 135 318 312 HOH HOH A . C 3 HOH 136 319 313 HOH HOH A . C 3 HOH 137 320 314 HOH HOH A . C 3 HOH 138 321 315 HOH HOH A . C 3 HOH 139 322 316 HOH HOH A . C 3 HOH 140 323 317 HOH HOH A . C 3 HOH 141 324 318 HOH HOH A . C 3 HOH 142 325 319 HOH HOH A . C 3 HOH 143 326 320 HOH HOH A . C 3 HOH 144 327 321 HOH HOH A . C 3 HOH 145 328 322 HOH HOH A . C 3 HOH 146 329 323 HOH HOH A . C 3 HOH 147 330 324 HOH HOH A . C 3 HOH 148 331 325 HOH HOH A . C 3 HOH 149 332 326 HOH HOH A . C 3 HOH 150 333 327 HOH HOH A . C 3 HOH 151 334 328 HOH HOH A . C 3 HOH 152 335 329 HOH HOH A . C 3 HOH 153 336 330 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1991-07-15 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_database_status.process_site' # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEET PRESENTED AS *A* ON SHEET RECORDS BELOW IS ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 147 ? ? OE2 A GLU 147 ? ? 1.338 1.252 0.086 0.011 N 2 1 NE2 A HIS 170 ? ? CD2 A HIS 170 ? ? 1.297 1.373 -0.076 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 2 ? ? CZ A ARG 2 ? ? NH1 A ARG 2 ? ? 123.64 120.30 3.34 0.50 N 2 1 N A ASP 3 ? ? CA A ASP 3 ? ? C A ASP 3 ? ? 127.40 111.00 16.40 2.70 N 3 1 CG1 A VAL 6 ? ? CB A VAL 6 ? ? CG2 A VAL 6 ? ? 100.10 110.90 -10.80 1.60 N 4 1 CD1 A TRP 24 ? ? CG A TRP 24 ? ? CD2 A TRP 24 ? ? 113.12 106.30 6.82 0.80 N 5 1 CE2 A TRP 24 ? ? CD2 A TRP 24 ? ? CG A TRP 24 ? ? 101.68 107.30 -5.62 0.80 N 6 1 CD1 A TRP 67 ? ? CG A TRP 67 ? ? CD2 A TRP 67 ? ? 113.72 106.30 7.42 0.80 N 7 1 CB A TRP 67 ? ? CG A TRP 67 ? ? CD1 A TRP 67 ? ? 117.60 127.00 -9.40 1.30 N 8 1 CE2 A TRP 67 ? ? CD2 A TRP 67 ? ? CG A TRP 67 ? ? 100.40 107.30 -6.90 0.80 N 9 1 CG A TRP 67 ? ? CD2 A TRP 67 ? ? CE3 A TRP 67 ? ? 139.85 133.90 5.95 0.90 N 10 1 CD1 A TRP 91 ? ? CG A TRP 91 ? ? CD2 A TRP 91 ? ? 112.65 106.30 6.35 0.80 N 11 1 CE2 A TRP 91 ? ? CD2 A TRP 91 ? ? CG A TRP 91 ? ? 101.67 107.30 -5.63 0.80 N 12 1 CD1 A TRP 105 ? ? CG A TRP 105 ? ? CD2 A TRP 105 ? ? 112.02 106.30 5.72 0.80 N 13 1 CE2 A TRP 105 ? ? CD2 A TRP 105 ? ? CG A TRP 105 ? ? 101.14 107.30 -6.16 0.80 N 14 1 NE A ARG 121 ? ? CZ A ARG 121 ? ? NH1 A ARG 121 ? ? 112.84 120.30 -7.46 0.50 N 15 1 NE A ARG 121 ? ? CZ A ARG 121 ? ? NH2 A ARG 121 ? ? 125.90 120.30 5.60 0.50 N 16 1 NE A ARG 139 ? ? CZ A ARG 139 ? ? NH1 A ARG 139 ? ? 115.14 120.30 -5.16 0.50 N 17 1 NE A ARG 139 ? ? CZ A ARG 139 ? ? NH2 A ARG 139 ? ? 126.30 120.30 6.00 0.50 N 18 1 CA A LYS 150 ? ? CB A LYS 150 ? ? CG A LYS 150 ? ? 128.72 113.40 15.32 2.20 N 19 1 NE A ARG 166 ? ? CZ A ARG 166 ? ? NH2 A ARG 166 ? ? 123.73 120.30 3.43 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 66 ? ? 80.20 45.40 2 1 TYR A 111 ? ? 65.62 -35.51 3 1 THR A 113 ? ? -135.14 -46.27 4 1 ASP A 131 ? ? -163.51 108.93 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 175 ? CA ? A ASP 175 CA 2 1 Y 1 A ASP 175 ? C ? A ASP 175 C 3 1 Y 1 A ASP 175 ? O ? A ASP 175 O 4 1 Y 1 A ASP 175 ? CB ? A ASP 175 CB 5 1 Y 1 A ASP 175 ? CG ? A ASP 175 CG 6 1 Y 1 A ASP 175 ? OD1 ? A ASP 175 OD1 7 1 Y 1 A ASP 175 ? OD2 ? A ASP 175 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 176 ? A GLY 176 2 1 Y 1 A ARG 177 ? A ARG 177 3 1 Y 1 A SER 178 ? A SER 178 4 1 Y 1 A GLU 179 ? A GLU 179 5 1 Y 1 A ARG 180 ? A ARG 180 6 1 Y 1 A ASN 181 ? A ASN 181 7 1 Y 1 A LEU 182 ? A LEU 182 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINOL RTL 3 water HOH #