data_1RDV # _entry.id 1RDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RDV pdb_00001rdv 10.2210/pdb1rdv/pdb WWPDB D_1000176043 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-18 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RDV _pdbx_database_status.recvd_initial_deposition_date 1998-09-30 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Higuchi, Y.' 1 'Yasuoka, N.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.' 'Acta Crystallogr.,Sect.D' 55 408 413 1999 ABCRE6 DK 0907-4449 0766 ? 10089348 10.1107/S0907444998011810 1 'Preliminary Crystallographic Study of Two Crystal Forms of Rubredoxin from Sulfate-Reducing Bacterium' 'Protein Pept.Lett.' 5 175 ? 1998 PPELEN NE 0929-8665 2077 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Misaki, S.' 1 ? primary 'Morimoto, Y.' 2 ? primary 'Ogata, M.' 3 ? primary 'Yagi, T.' 4 ? primary 'Higuchi, Y.' 5 ? primary 'Yasuoka, N.' 6 ? 1 'Higuchi, Y.' 7 ? 1 'Sugiyama, M.S.' 8 ? 1 'Morimoto, S.' 9 ? 1 'Ogata, Y.' 10 ? 1 'Yagi, M.' 11 ? 1 'Yasuoka, T.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat RUBREDOXIN 5602.237 1 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEPA _entity_poly.pdbx_seq_one_letter_code_can MKKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEPA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 TYR n 1 5 VAL n 1 6 CYS n 1 7 THR n 1 8 VAL n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 GLU n 1 13 TYR n 1 14 ASP n 1 15 PRO n 1 16 ALA n 1 17 GLU n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 VAL n 1 25 LYS n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 ALA n 1 30 PHE n 1 31 GLU n 1 32 ASP n 1 33 VAL n 1 34 PRO n 1 35 ALA n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 ILE n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 PRO n 1 52 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific ;Desulfovibrio vulgaris str. 'Miyazaki F' ; _entity_src_nat.pdbx_ncbi_taxonomy_id 883 _entity_src_nat.genus Desulfovibrio _entity_src_nat.species 'Desulfovibrio vulgaris' _entity_src_nat.strain 'MIYAZAKI F' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'IAM 12604' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ALA 52 52 52 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 53 1 FE FE A . C 3 HOH 1 54 1 HOH HOH A . C 3 HOH 2 55 2 HOH HOH A . C 3 HOH 3 56 3 HOH HOH A . C 3 HOH 4 57 4 HOH HOH A . C 3 HOH 5 58 5 HOH HOH A . C 3 HOH 6 59 6 HOH HOH A . C 3 HOH 7 60 7 HOH HOH A . C 3 HOH 8 61 8 HOH HOH A . C 3 HOH 9 62 9 HOH HOH A . C 3 HOH 10 63 10 HOH HOH A . C 3 HOH 11 64 11 HOH HOH A . C 3 HOH 12 65 12 HOH HOH A . C 3 HOH 13 66 13 HOH HOH A . C 3 HOH 14 67 14 HOH HOH A . C 3 HOH 15 68 15 HOH HOH A . C 3 HOH 16 69 16 HOH HOH A . C 3 HOH 17 70 17 HOH HOH A . C 3 HOH 18 71 18 HOH HOH A . C 3 HOH 19 72 19 HOH HOH A . C 3 HOH 20 73 20 HOH HOH A . C 3 HOH 21 74 21 HOH HOH A . C 3 HOH 22 75 22 HOH HOH A . C 3 HOH 23 76 23 HOH HOH A . C 3 HOH 24 77 24 HOH HOH A . C 3 HOH 25 78 25 HOH HOH A . C 3 HOH 26 79 26 HOH HOH A . C 3 HOH 27 80 27 HOH HOH A . C 3 HOH 28 81 28 HOH HOH A . C 3 HOH 29 82 29 HOH HOH A . C 3 HOH 30 83 30 HOH HOH A . C 3 HOH 31 84 31 HOH HOH A . C 3 HOH 32 85 32 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 WEIS 'data reduction' . ? 3 FSCALE 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1RDV _cell.length_a 43.700 _cell.length_b 43.700 _cell.length_c 50.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RDV _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # _exptl.entry_id 1RDV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.4' # _diffrn.id 1 _diffrn.ambient_temp 288 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1RDV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 10630 _reflns.number_all ? _reflns.percent_possible_obs 53.6 _reflns.pdbx_Rmerge_I_obs 0.0890000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1RDV _refine.ls_number_reflns_obs 2541 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 53.6 _refine.ls_R_factor_obs 0.2080000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2080000 _refine.ls_R_factor_R_free 0.2720000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 38.0 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 7RXN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 391 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 424 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.238 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.691 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1RDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1RDV _struct.title 'RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RDV _struct_keywords.pdbx_keywords 'ELECTRON TRANSFER' _struct_keywords.text 'ELECTRON TRANSFER, RUBREDOXIN, METALLOPROTEIN, SULFATE-REDUCING BACTERIUM, IRON-SULFUR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_DESVM _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P15412 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code MKKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEPA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RDV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15412 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 52 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? ASN A 22 ? PRO A 20 ASN A 22 5 ? 3 HELX_P HELX_P2 2 LYS A 46 ? GLU A 48 ? LYS A 46 GLU A 48 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 B FE . FE ? ? A CYS 6 A FE 53 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 B FE . FE ? ? A CYS 9 A FE 53 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 B FE . FE ? ? A CYS 39 A FE 53 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 B FE . FE ? ? A CYS 42 A FE 53 1_555 ? ? ? ? ? ? ? 2.304 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 6 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 108.2 ? 2 SG ? A CYS 6 ? A CYS 6 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 108.1 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 109.6 ? 4 SG ? A CYS 6 ? A CYS 6 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 111.2 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 110.3 ? 6 SG ? A CYS 39 ? A CYS 39 ? 1_555 FE ? B FE . ? A FE 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 109.5 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 4 ? CYS A 6 ? TYR A 4 CYS A 6 A 2 PHE A 49 ? PRO A 51 ? PHE A 49 PRO A 51 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 5 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 5 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id GLU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 50 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 50 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details FE Unknown ? ? ? ? 4 'FE COORDINATION SITE' AC1 Software A FE 53 ? 4 'BINDING SITE FOR RESIDUE FE A 53' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 FE 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 2 FE 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 3 FE 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 4 FE 4 CYS A 42 ? CYS A 42 . ? 1_555 ? 5 AC1 4 CYS A 6 ? CYS A 6 . ? 1_555 ? 6 AC1 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 7 AC1 4 CYS A 39 ? CYS A 39 . ? 1_555 ? 8 AC1 4 CYS A 42 ? CYS A 42 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 17 ? ? -137.06 -43.25 2 1 ASP A 19 ? ? -151.36 66.85 3 1 ASP A 21 ? ? -73.07 23.57 4 1 ASN A 22 ? ? -144.46 32.99 5 1 ALA A 44 ? ? -43.94 150.38 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 FE FE FE N N 61 GLU N N N N 62 GLU CA C N S 63 GLU C C N N 64 GLU O O N N 65 GLU CB C N N 66 GLU CG C N N 67 GLU CD C N N 68 GLU OE1 O N N 69 GLU OE2 O N N 70 GLU OXT O N N 71 GLU H H N N 72 GLU H2 H N N 73 GLU HA H N N 74 GLU HB2 H N N 75 GLU HB3 H N N 76 GLU HG2 H N N 77 GLU HG3 H N N 78 GLU HE2 H N N 79 GLU HXT H N N 80 GLY N N N N 81 GLY CA C N N 82 GLY C C N N 83 GLY O O N N 84 GLY OXT O N N 85 GLY H H N N 86 GLY H2 H N N 87 GLY HA2 H N N 88 GLY HA3 H N N 89 GLY HXT H N N 90 HOH O O N N 91 HOH H1 H N N 92 HOH H2 H N N 93 ILE N N N N 94 ILE CA C N S 95 ILE C C N N 96 ILE O O N N 97 ILE CB C N S 98 ILE CG1 C N N 99 ILE CG2 C N N 100 ILE CD1 C N N 101 ILE OXT O N N 102 ILE H H N N 103 ILE H2 H N N 104 ILE HA H N N 105 ILE HB H N N 106 ILE HG12 H N N 107 ILE HG13 H N N 108 ILE HG21 H N N 109 ILE HG22 H N N 110 ILE HG23 H N N 111 ILE HD11 H N N 112 ILE HD12 H N N 113 ILE HD13 H N N 114 ILE HXT H N N 115 LYS N N N N 116 LYS CA C N S 117 LYS C C N N 118 LYS O O N N 119 LYS CB C N N 120 LYS CG C N N 121 LYS CD C N N 122 LYS CE C N N 123 LYS NZ N N N 124 LYS OXT O N N 125 LYS H H N N 126 LYS H2 H N N 127 LYS HA H N N 128 LYS HB2 H N N 129 LYS HB3 H N N 130 LYS HG2 H N N 131 LYS HG3 H N N 132 LYS HD2 H N N 133 LYS HD3 H N N 134 LYS HE2 H N N 135 LYS HE3 H N N 136 LYS HZ1 H N N 137 LYS HZ2 H N N 138 LYS HZ3 H N N 139 LYS HXT H N N 140 MET N N N N 141 MET CA C N S 142 MET C C N N 143 MET O O N N 144 MET CB C N N 145 MET CG C N N 146 MET SD S N N 147 MET CE C N N 148 MET OXT O N N 149 MET H H N N 150 MET H2 H N N 151 MET HA H N N 152 MET HB2 H N N 153 MET HB3 H N N 154 MET HG2 H N N 155 MET HG3 H N N 156 MET HE1 H N N 157 MET HE2 H N N 158 MET HE3 H N N 159 MET HXT H N N 160 PHE N N N N 161 PHE CA C N S 162 PHE C C N N 163 PHE O O N N 164 PHE CB C N N 165 PHE CG C Y N 166 PHE CD1 C Y N 167 PHE CD2 C Y N 168 PHE CE1 C Y N 169 PHE CE2 C Y N 170 PHE CZ C Y N 171 PHE OXT O N N 172 PHE H H N N 173 PHE H2 H N N 174 PHE HA H N N 175 PHE HB2 H N N 176 PHE HB3 H N N 177 PHE HD1 H N N 178 PHE HD2 H N N 179 PHE HE1 H N N 180 PHE HE2 H N N 181 PHE HZ H N N 182 PHE HXT H N N 183 PRO N N N N 184 PRO CA C N S 185 PRO C C N N 186 PRO O O N N 187 PRO CB C N N 188 PRO CG C N N 189 PRO CD C N N 190 PRO OXT O N N 191 PRO H H N N 192 PRO HA H N N 193 PRO HB2 H N N 194 PRO HB3 H N N 195 PRO HG2 H N N 196 PRO HG3 H N N 197 PRO HD2 H N N 198 PRO HD3 H N N 199 PRO HXT H N N 200 SER N N N N 201 SER CA C N S 202 SER C C N N 203 SER O O N N 204 SER CB C N N 205 SER OG O N N 206 SER OXT O N N 207 SER H H N N 208 SER H2 H N N 209 SER HA H N N 210 SER HB2 H N N 211 SER HB3 H N N 212 SER HG H N N 213 SER HXT H N N 214 THR N N N N 215 THR CA C N S 216 THR C C N N 217 THR O O N N 218 THR CB C N R 219 THR OG1 O N N 220 THR CG2 C N N 221 THR OXT O N N 222 THR H H N N 223 THR H2 H N N 224 THR HA H N N 225 THR HB H N N 226 THR HG1 H N N 227 THR HG21 H N N 228 THR HG22 H N N 229 THR HG23 H N N 230 THR HXT H N N 231 TRP N N N N 232 TRP CA C N S 233 TRP C C N N 234 TRP O O N N 235 TRP CB C N N 236 TRP CG C Y N 237 TRP CD1 C Y N 238 TRP CD2 C Y N 239 TRP NE1 N Y N 240 TRP CE2 C Y N 241 TRP CE3 C Y N 242 TRP CZ2 C Y N 243 TRP CZ3 C Y N 244 TRP CH2 C Y N 245 TRP OXT O N N 246 TRP H H N N 247 TRP H2 H N N 248 TRP HA H N N 249 TRP HB2 H N N 250 TRP HB3 H N N 251 TRP HD1 H N N 252 TRP HE1 H N N 253 TRP HE3 H N N 254 TRP HZ2 H N N 255 TRP HZ3 H N N 256 TRP HH2 H N N 257 TRP HXT H N N 258 TYR N N N N 259 TYR CA C N S 260 TYR C C N N 261 TYR O O N N 262 TYR CB C N N 263 TYR CG C Y N 264 TYR CD1 C Y N 265 TYR CD2 C Y N 266 TYR CE1 C Y N 267 TYR CE2 C Y N 268 TYR CZ C Y N 269 TYR OH O N N 270 TYR OXT O N N 271 TYR H H N N 272 TYR H2 H N N 273 TYR HA H N N 274 TYR HB2 H N N 275 TYR HB3 H N N 276 TYR HD1 H N N 277 TYR HD2 H N N 278 TYR HE1 H N N 279 TYR HE2 H N N 280 TYR HH H N N 281 TYR HXT H N N 282 VAL N N N N 283 VAL CA C N S 284 VAL C C N N 285 VAL O O N N 286 VAL CB C N N 287 VAL CG1 C N N 288 VAL CG2 C N N 289 VAL OXT O N N 290 VAL H H N N 291 VAL H2 H N N 292 VAL HA H N N 293 VAL HB H N N 294 VAL HG11 H N N 295 VAL HG12 H N N 296 VAL HG13 H N N 297 VAL HG21 H N N 298 VAL HG22 H N N 299 VAL HG23 H N N 300 VAL HXT H N N 301 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 GLU N CA sing N N 57 GLU N H sing N N 58 GLU N H2 sing N N 59 GLU CA C sing N N 60 GLU CA CB sing N N 61 GLU CA HA sing N N 62 GLU C O doub N N 63 GLU C OXT sing N N 64 GLU CB CG sing N N 65 GLU CB HB2 sing N N 66 GLU CB HB3 sing N N 67 GLU CG CD sing N N 68 GLU CG HG2 sing N N 69 GLU CG HG3 sing N N 70 GLU CD OE1 doub N N 71 GLU CD OE2 sing N N 72 GLU OE2 HE2 sing N N 73 GLU OXT HXT sing N N 74 GLY N CA sing N N 75 GLY N H sing N N 76 GLY N H2 sing N N 77 GLY CA C sing N N 78 GLY CA HA2 sing N N 79 GLY CA HA3 sing N N 80 GLY C O doub N N 81 GLY C OXT sing N N 82 GLY OXT HXT sing N N 83 HOH O H1 sing N N 84 HOH O H2 sing N N 85 ILE N CA sing N N 86 ILE N H sing N N 87 ILE N H2 sing N N 88 ILE CA C sing N N 89 ILE CA CB sing N N 90 ILE CA HA sing N N 91 ILE C O doub N N 92 ILE C OXT sing N N 93 ILE CB CG1 sing N N 94 ILE CB CG2 sing N N 95 ILE CB HB sing N N 96 ILE CG1 CD1 sing N N 97 ILE CG1 HG12 sing N N 98 ILE CG1 HG13 sing N N 99 ILE CG2 HG21 sing N N 100 ILE CG2 HG22 sing N N 101 ILE CG2 HG23 sing N N 102 ILE CD1 HD11 sing N N 103 ILE CD1 HD12 sing N N 104 ILE CD1 HD13 sing N N 105 ILE OXT HXT sing N N 106 LYS N CA sing N N 107 LYS N H sing N N 108 LYS N H2 sing N N 109 LYS CA C sing N N 110 LYS CA CB sing N N 111 LYS CA HA sing N N 112 LYS C O doub N N 113 LYS C OXT sing N N 114 LYS CB CG sing N N 115 LYS CB HB2 sing N N 116 LYS CB HB3 sing N N 117 LYS CG CD sing N N 118 LYS CG HG2 sing N N 119 LYS CG HG3 sing N N 120 LYS CD CE sing N N 121 LYS CD HD2 sing N N 122 LYS CD HD3 sing N N 123 LYS CE NZ sing N N 124 LYS CE HE2 sing N N 125 LYS CE HE3 sing N N 126 LYS NZ HZ1 sing N N 127 LYS NZ HZ2 sing N N 128 LYS NZ HZ3 sing N N 129 LYS OXT HXT sing N N 130 MET N CA sing N N 131 MET N H sing N N 132 MET N H2 sing N N 133 MET CA C sing N N 134 MET CA CB sing N N 135 MET CA HA sing N N 136 MET C O doub N N 137 MET C OXT sing N N 138 MET CB CG sing N N 139 MET CB HB2 sing N N 140 MET CB HB3 sing N N 141 MET CG SD sing N N 142 MET CG HG2 sing N N 143 MET CG HG3 sing N N 144 MET SD CE sing N N 145 MET CE HE1 sing N N 146 MET CE HE2 sing N N 147 MET CE HE3 sing N N 148 MET OXT HXT sing N N 149 PHE N CA sing N N 150 PHE N H sing N N 151 PHE N H2 sing N N 152 PHE CA C sing N N 153 PHE CA CB sing N N 154 PHE CA HA sing N N 155 PHE C O doub N N 156 PHE C OXT sing N N 157 PHE CB CG sing N N 158 PHE CB HB2 sing N N 159 PHE CB HB3 sing N N 160 PHE CG CD1 doub Y N 161 PHE CG CD2 sing Y N 162 PHE CD1 CE1 sing Y N 163 PHE CD1 HD1 sing N N 164 PHE CD2 CE2 doub Y N 165 PHE CD2 HD2 sing N N 166 PHE CE1 CZ doub Y N 167 PHE CE1 HE1 sing N N 168 PHE CE2 CZ sing Y N 169 PHE CE2 HE2 sing N N 170 PHE CZ HZ sing N N 171 PHE OXT HXT sing N N 172 PRO N CA sing N N 173 PRO N CD sing N N 174 PRO N H sing N N 175 PRO CA C sing N N 176 PRO CA CB sing N N 177 PRO CA HA sing N N 178 PRO C O doub N N 179 PRO C OXT sing N N 180 PRO CB CG sing N N 181 PRO CB HB2 sing N N 182 PRO CB HB3 sing N N 183 PRO CG CD sing N N 184 PRO CG HG2 sing N N 185 PRO CG HG3 sing N N 186 PRO CD HD2 sing N N 187 PRO CD HD3 sing N N 188 PRO OXT HXT sing N N 189 SER N CA sing N N 190 SER N H sing N N 191 SER N H2 sing N N 192 SER CA C sing N N 193 SER CA CB sing N N 194 SER CA HA sing N N 195 SER C O doub N N 196 SER C OXT sing N N 197 SER CB OG sing N N 198 SER CB HB2 sing N N 199 SER CB HB3 sing N N 200 SER OG HG sing N N 201 SER OXT HXT sing N N 202 THR N CA sing N N 203 THR N H sing N N 204 THR N H2 sing N N 205 THR CA C sing N N 206 THR CA CB sing N N 207 THR CA HA sing N N 208 THR C O doub N N 209 THR C OXT sing N N 210 THR CB OG1 sing N N 211 THR CB CG2 sing N N 212 THR CB HB sing N N 213 THR OG1 HG1 sing N N 214 THR CG2 HG21 sing N N 215 THR CG2 HG22 sing N N 216 THR CG2 HG23 sing N N 217 THR OXT HXT sing N N 218 TRP N CA sing N N 219 TRP N H sing N N 220 TRP N H2 sing N N 221 TRP CA C sing N N 222 TRP CA CB sing N N 223 TRP CA HA sing N N 224 TRP C O doub N N 225 TRP C OXT sing N N 226 TRP CB CG sing N N 227 TRP CB HB2 sing N N 228 TRP CB HB3 sing N N 229 TRP CG CD1 doub Y N 230 TRP CG CD2 sing Y N 231 TRP CD1 NE1 sing Y N 232 TRP CD1 HD1 sing N N 233 TRP CD2 CE2 doub Y N 234 TRP CD2 CE3 sing Y N 235 TRP NE1 CE2 sing Y N 236 TRP NE1 HE1 sing N N 237 TRP CE2 CZ2 sing Y N 238 TRP CE3 CZ3 doub Y N 239 TRP CE3 HE3 sing N N 240 TRP CZ2 CH2 doub Y N 241 TRP CZ2 HZ2 sing N N 242 TRP CZ3 CH2 sing Y N 243 TRP CZ3 HZ3 sing N N 244 TRP CH2 HH2 sing N N 245 TRP OXT HXT sing N N 246 TYR N CA sing N N 247 TYR N H sing N N 248 TYR N H2 sing N N 249 TYR CA C sing N N 250 TYR CA CB sing N N 251 TYR CA HA sing N N 252 TYR C O doub N N 253 TYR C OXT sing N N 254 TYR CB CG sing N N 255 TYR CB HB2 sing N N 256 TYR CB HB3 sing N N 257 TYR CG CD1 doub Y N 258 TYR CG CD2 sing Y N 259 TYR CD1 CE1 sing Y N 260 TYR CD1 HD1 sing N N 261 TYR CD2 CE2 doub Y N 262 TYR CD2 HD2 sing N N 263 TYR CE1 CZ doub Y N 264 TYR CE1 HE1 sing N N 265 TYR CE2 CZ sing Y N 266 TYR CE2 HE2 sing N N 267 TYR CZ OH sing N N 268 TYR OH HH sing N N 269 TYR OXT HXT sing N N 270 VAL N CA sing N N 271 VAL N H sing N N 272 VAL N H2 sing N N 273 VAL CA C sing N N 274 VAL CA CB sing N N 275 VAL CA HA sing N N 276 VAL C O doub N N 277 VAL C OXT sing N N 278 VAL CB CG1 sing N N 279 VAL CB CG2 sing N N 280 VAL CB HB sing N N 281 VAL CG1 HG11 sing N N 282 VAL CG1 HG12 sing N N 283 VAL CG1 HG13 sing N N 284 VAL CG2 HG21 sing N N 285 VAL CG2 HG22 sing N N 286 VAL CG2 HG23 sing N N 287 VAL OXT HXT sing N N 288 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7RXN _pdbx_initial_refinement_model.details 'PDB ENTRY 7RXN' # _atom_sites.entry_id 1RDV _atom_sites.fract_transf_matrix[1][1] 0.022883 _atom_sites.fract_transf_matrix[1][2] 0.013212 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026423 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019724 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_