HEADER CONTRACTILE PROTEIN 06-NOV-03 1RE6 TITLE LOCALISATION OF DYNEIN LIGHT CHAINS 1 AND 2 AND THEIR PRO-APOPTOTIC TITLE 2 LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DLC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P-3 KEYWDS DYNEIN LIGHT CHAIN, APOPTOSIS, DIMER, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.L.DAY,H.PUTHALAKATH,G.SKEA,A.STRASSER,I.BARSUKOV,L.Y.LIAN, AUTHOR 2 D.C.HUANG,M.G.HINDS REVDAT 3 02-MAR-22 1RE6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1RE6 1 VERSN REVDAT 1 23-MAR-04 1RE6 0 JRNL AUTH C.L.DAY,H.PUTHALAKATH,G.SKEA,A.STRASSER,I.BARSUKOV,L.Y.LIAN, JRNL AUTH 2 D.C.HUANG,M.G.HINDS JRNL TITL LOCALIZATION OF DYNEIN LIGHT CHAINS 1 AND 2 AND THEIR JRNL TITL 2 PRO-APOPTOTIC LIGANDS. JRNL REF BIOCHEM.J. V. 377 597 2004 JRNL REFN ISSN 0264-6021 JRNL PMID 14561217 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.0 REMARK 3 AUTHORS : BRUKER AG (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 DELANO, GROS, GROSSE-KUNSTLEVE, JIANG, KUSEWSKI, REMARK 3 NILGES, PANNU, READ, RICE, SIMONSON, WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1602 RESTRAINTS, 1417 ARE NOE DERIVED DISTANCE CONSTRAINTS,99 REMARK 3 ARE INTERPROTOMER DISTANCE CONSTRAINTS, 127 ARE DIHEDRAL ANGLE REMARK 3 RESTRAINTS AND 29 HYDROGEN BONDS. REMARK 4 REMARK 4 1RE6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020678. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 6.7; 6.7; 6.7 REMARK 210 IONIC STRENGTH : 120MM; 120MM; 120MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM DLC2, 50MM SODIUM PHOSPHATE REMARK 210 BUFFER PH 6.7, 70MM NACL, 2MM REMARK 210 TCEP, 0.04% SODIUM AZIDE, 95% REMARK 210 H2O, 5% D2O; 1MM U-15N DLC2, REMARK 210 50MM SODIUM PHOSPHATE BUFFER PH REMARK 210 6.7, 70MM NACL, 2MM TCEP, 0.04% REMARK 210 SODIUM AZIDE, 95% H2O, 5% D2O; REMARK 210 1MM U-13C,15N DLC2, 50MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 6.7, 70MM REMARK 210 NACL, 2MM TCEP, 0.04% SODIUM REMARK 210 AZIDE, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY 1.3, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 2D AND 3D REMARK 210 HETERONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 10 HD1 TYR B 75 1.31 REMARK 500 HD21 ASN A 10 HD1 TYR A 75 1.32 REMARK 500 O GLY B 59 H ALA B 82 1.46 REMARK 500 O GLY A 59 H ALA A 82 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 0 -44.97 -130.54 REMARK 500 1 ASP A 3 40.60 -151.11 REMARK 500 1 LYS A 9 -38.16 -148.37 REMARK 500 1 ASN A 10 36.18 -92.28 REMARK 500 1 ASN A 33 39.29 -147.16 REMARK 500 1 ASN A 51 150.00 80.87 REMARK 500 1 ARG A 60 -105.65 -82.40 REMARK 500 1 PHE A 73 117.66 -160.38 REMARK 500 1 GLN A 80 28.10 -154.81 REMARK 500 1 SER A 88 -47.55 -134.48 REMARK 500 1 MET B 1 -45.49 -148.68 REMARK 500 1 LYS B 9 -38.13 -148.43 REMARK 500 1 ASN B 10 36.19 -92.24 REMARK 500 1 ASN B 33 39.26 -147.26 REMARK 500 1 ASN B 51 149.94 80.87 REMARK 500 1 ARG B 60 -105.62 -82.37 REMARK 500 1 PHE B 73 117.68 -160.39 REMARK 500 1 GLN B 80 28.08 -154.79 REMARK 500 1 SER B 88 -47.53 -134.55 REMARK 500 2 SER A 0 46.83 -87.53 REMARK 500 2 LYS A 5 136.90 -178.68 REMARK 500 2 LYS A 9 -37.41 -133.10 REMARK 500 2 TYR A 50 -73.30 -87.74 REMARK 500 2 ASN A 51 142.26 169.77 REMARK 500 2 HIS A 55 72.70 -104.62 REMARK 500 2 ARG A 60 -99.59 -92.38 REMARK 500 2 GLU A 69 -150.90 -96.18 REMARK 500 2 THR A 70 -82.05 -86.59 REMARK 500 2 HIS A 72 86.33 -59.69 REMARK 500 2 PHE A 73 126.58 -179.17 REMARK 500 2 GLN A 80 28.56 -152.24 REMARK 500 2 SER B 0 48.44 -86.23 REMARK 500 2 MET B 1 45.88 -141.43 REMARK 500 2 LYS B 9 -37.44 -133.14 REMARK 500 2 TYR B 50 -73.23 -87.84 REMARK 500 2 ASN B 51 142.19 169.73 REMARK 500 2 HIS B 55 72.59 -104.58 REMARK 500 2 ARG B 60 -99.65 -92.22 REMARK 500 2 GLU B 69 -150.83 -96.19 REMARK 500 2 THR B 70 -81.90 -86.71 REMARK 500 2 HIS B 72 86.31 -59.77 REMARK 500 2 PHE B 73 126.60 -179.16 REMARK 500 2 GLN B 80 28.41 -152.19 REMARK 500 3 PRO A -3 42.87 -76.35 REMARK 500 3 LEU A -2 44.82 -85.67 REMARK 500 3 LYS A 5 136.18 -177.82 REMARK 500 3 LYS A 9 -45.80 -135.33 REMARK 500 3 ASN A 51 141.10 77.10 REMARK 500 3 PRO A 52 156.76 -47.90 REMARK 500 3 ARG A 60 -96.07 -91.99 REMARK 500 REMARK 500 THIS ENTRY HAS 419 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1RE6 A 1 89 GB 18087731 NP_080832 1 89 DBREF 1RE6 B 1 89 GB 18087731 NP_080832 1 89 SEQADV 1RE6 GLY A -4 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 PRO A -3 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 LEU A -2 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 GLY A -1 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 SER A 0 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 GLY B -4 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 PRO B -3 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 LEU B -2 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 GLY B -1 GB 18087731 CLONING ARTIFACT SEQADV 1RE6 SER B 0 GB 18087731 CLONING ARTIFACT SEQRES 1 A 94 GLY PRO LEU GLY SER MET SER ASP ARG LYS ALA VAL ILE SEQRES 2 A 94 LYS ASN ALA ASP MET SER GLU ASP MET GLN GLN ASP ALA SEQRES 3 A 94 VAL ASP CYS ALA THR GLN ALA MET GLU LYS TYR ASN ILE SEQRES 4 A 94 GLU LYS ASP ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP SEQRES 5 A 94 LYS LYS TYR ASN PRO THR TRP HIS CYS ILE VAL GLY ARG SEQRES 6 A 94 ASN PHE GLY SER TYR VAL THR HIS GLU THR LYS HIS PHE SEQRES 7 A 94 ILE TYR PHE TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE SEQRES 8 A 94 LYS SER GLY SEQRES 1 B 94 GLY PRO LEU GLY SER MET SER ASP ARG LYS ALA VAL ILE SEQRES 2 B 94 LYS ASN ALA ASP MET SER GLU ASP MET GLN GLN ASP ALA SEQRES 3 B 94 VAL ASP CYS ALA THR GLN ALA MET GLU LYS TYR ASN ILE SEQRES 4 B 94 GLU LYS ASP ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP SEQRES 5 B 94 LYS LYS TYR ASN PRO THR TRP HIS CYS ILE VAL GLY ARG SEQRES 6 B 94 ASN PHE GLY SER TYR VAL THR HIS GLU THR LYS HIS PHE SEQRES 7 B 94 ILE TYR PHE TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE SEQRES 8 B 94 LYS SER GLY HELIX 1 1 SER A 14 TYR A 32 1 19 HELIX 2 2 ILE A 34 TYR A 50 1 17 HELIX 3 3 SER B 14 TYR B 32 1 19 HELIX 4 4 ILE B 34 TYR B 50 1 17 SHEET 1 A 4 ASN A 10 ALA A 11 0 SHEET 2 A 4 ILE A 74 TYR A 75 -1 O TYR A 75 N ASN A 10 SHEET 3 A 4 ALA A 82 LYS A 87 -1 O LEU A 85 N ILE A 74 SHEET 4 A 4 TRP A 54 HIS A 55 -1 N HIS A 55 O PHE A 86 SHEET 1 B 4 ASN A 10 ALA A 11 0 SHEET 2 B 4 ILE A 74 TYR A 75 -1 O TYR A 75 N ASN A 10 SHEET 3 B 4 ALA A 82 LYS A 87 -1 O LEU A 85 N ILE A 74 SHEET 4 B 4 VAL A 58 GLY A 59 -1 N GLY A 59 O ALA A 82 SHEET 1 C 4 ASN B 10 ALA B 11 0 SHEET 2 C 4 ILE B 74 TYR B 75 -1 O TYR B 75 N ASN B 10 SHEET 3 C 4 ALA B 82 LYS B 87 -1 O LEU B 85 N ILE B 74 SHEET 4 C 4 TRP B 54 HIS B 55 -1 N HIS B 55 O PHE B 86 SHEET 1 D 4 ASN B 10 ALA B 11 0 SHEET 2 D 4 ILE B 74 TYR B 75 -1 O TYR B 75 N ASN B 10 SHEET 3 D 4 ALA B 82 LYS B 87 -1 O LEU B 85 N ILE B 74 SHEET 4 D 4 VAL B 58 GLY B 59 -1 N GLY B 59 O ALA B 82 CISPEP 1 PRO A 52 THR A 53 1 0.16 CISPEP 2 PRO B 52 THR B 53 1 0.19 CISPEP 3 PRO A 52 THR A 53 2 0.62 CISPEP 4 PRO B 52 THR B 53 2 0.69 CISPEP 5 PRO A 52 THR A 53 3 0.40 CISPEP 6 PRO B 52 THR B 53 3 0.49 CISPEP 7 PRO A 52 THR A 53 4 0.44 CISPEP 8 PRO B 52 THR B 53 4 0.45 CISPEP 9 PRO A 52 THR A 53 5 0.37 CISPEP 10 PRO B 52 THR B 53 5 0.18 CISPEP 11 PRO A 52 THR A 53 6 0.37 CISPEP 12 PRO B 52 THR B 53 6 0.37 CISPEP 13 PRO A 52 THR A 53 7 0.50 CISPEP 14 PRO B 52 THR B 53 7 0.41 CISPEP 15 PRO A 52 THR A 53 8 -0.01 CISPEP 16 PRO B 52 THR B 53 8 -0.04 CISPEP 17 PRO A 52 THR A 53 9 0.50 CISPEP 18 PRO B 52 THR B 53 9 0.56 CISPEP 19 PRO A 52 THR A 53 10 0.18 CISPEP 20 PRO B 52 THR B 53 10 0.22 CISPEP 21 PRO A 52 THR A 53 11 0.55 CISPEP 22 PRO B 52 THR B 53 11 0.29 CISPEP 23 PRO A 52 THR A 53 12 -0.22 CISPEP 24 PRO B 52 THR B 53 12 -0.17 CISPEP 25 PRO A 52 THR A 53 13 0.73 CISPEP 26 PRO B 52 THR B 53 13 0.67 CISPEP 27 PRO A 52 THR A 53 14 0.58 CISPEP 28 PRO B 52 THR B 53 14 0.59 CISPEP 29 PRO A 52 THR A 53 15 0.19 CISPEP 30 PRO B 52 THR B 53 15 0.36 CISPEP 31 PRO A 52 THR A 53 16 0.32 CISPEP 32 PRO B 52 THR B 53 16 0.46 CISPEP 33 PRO A 52 THR A 53 17 0.28 CISPEP 34 PRO B 52 THR B 53 17 0.27 CISPEP 35 PRO A 52 THR A 53 18 0.15 CISPEP 36 PRO B 52 THR B 53 18 0.21 CISPEP 37 PRO A 52 THR A 53 19 0.65 CISPEP 38 PRO B 52 THR B 53 19 0.66 CISPEP 39 PRO A 52 THR A 53 20 0.34 CISPEP 40 PRO B 52 THR B 53 20 0.42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1