HEADER HORMONE/GROWTH FACTOR/SIGNALING PROTEIN 07-NOV-03 1REW TITLE STRUCTURAL REFINEMENT OF THE COMPLEX OF BONE MORPHOGENETIC PROTEIN 2 TITLE 2 AND ITS TYPE IA RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATURE PART; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE IA; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 10 SYNONYM: SERINE/THREONINE-PROTEIN KINASE RECEPTOR R5; SKR5; ACTIVIN COMPND 11 RECEPTOR-LIKE KINASE 3; ALK-3; ACTIVIN A RECEPTOR; TYPE II-LIKE COMPND 12 KINASE 3; COMPND 13 EC: 2.7.1.37; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PN25C109; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS TGF-BETA FOLD; BRIA-FOLD; 3-FINGER TOXIN FOLD, HORMONE-GROWTH FACTOR- KEYWDS 2 SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.KELLER,J.NICKEL,J.-L.ZHANG,W.SEBALD,T.D.MUELLER REVDAT 6 30-OCT-24 1REW 1 REMARK REVDAT 5 23-AUG-23 1REW 1 SEQADV REVDAT 4 24-JUL-19 1REW 1 REMARK REVDAT 3 13-JUL-11 1REW 1 VERSN REVDAT 2 24-FEB-09 1REW 1 VERSN REVDAT 1 04-MAY-04 1REW 0 JRNL AUTH S.KELLER,J.NICKEL,J.L.ZHANG,W.SEBALD,T.D.MUELLER JRNL TITL MOLECULAR RECOGNITION OF BMP-2 AND BMP RECEPTOR IA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 481 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15064755 JRNL DOI 10.1038/NSMB756 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KIRSCH,W.SEBALD,M.K.DREYER REMARK 1 TITL CRYSTAL STRUCTURE OF THE BMP-2-BRIA ECTODOMAIN COMPLEX REMARK 1 REF NAT.STRUCT.BIOL. V. 7 492 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/75903 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : REFMAC5 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 51294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3047 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4157 ; 1.442 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 6.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2342 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1271 ; 0.230 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 325 ; 0.192 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.201 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.109 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3103 ; 1.355 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 2.152 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 3.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0000 67.2370 21.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1139 REMARK 3 T33: 0.0605 T12: -0.0800 REMARK 3 T13: 0.0160 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.7789 L22: 1.5230 REMARK 3 L33: 9.3436 L12: 0.5044 REMARK 3 L13: -0.3970 L23: -1.0274 REMARK 3 S TENSOR REMARK 3 S11: -0.0820 S12: 0.2262 S13: -0.0317 REMARK 3 S21: -0.3078 S22: 0.1129 S23: -0.0469 REMARK 3 S31: -0.3584 S32: 0.0861 S33: -0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -34.9880 61.4220 36.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0839 REMARK 3 T33: 0.0603 T12: -0.0537 REMARK 3 T13: 0.0114 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.4507 L22: 0.4100 REMARK 3 L33: 11.4003 L12: 0.1942 REMARK 3 L13: -1.0497 L23: 0.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.2003 S13: -0.0150 REMARK 3 S21: 0.1175 S22: 0.0236 S23: -0.0761 REMARK 3 S31: 0.0177 S32: -0.2629 S33: -0.0520 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 117 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8870 72.5810 45.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.2557 REMARK 3 T33: 0.1204 T12: -0.1531 REMARK 3 T13: -0.0928 T23: 0.0899 REMARK 3 L TENSOR REMARK 3 L11: 2.5423 L22: 9.7355 REMARK 3 L33: 5.5312 L12: 1.8973 REMARK 3 L13: -0.7987 L23: -4.2404 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: -0.2650 S13: -0.2008 REMARK 3 S21: 0.5267 S22: -0.5383 S23: -1.0099 REMARK 3 S31: -0.4595 S32: 0.7807 S33: 0.3876 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 32 D 120 REMARK 3 ORIGIN FOR THE GROUP (A): -41.9550 51.5290 12.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1639 REMARK 3 T33: 0.0502 T12: -0.1327 REMARK 3 T13: 0.0481 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 7.6280 L22: 3.0393 REMARK 3 L33: 6.7163 L12: -2.1657 REMARK 3 L13: -3.7413 L23: 1.6643 REMARK 3 S TENSOR REMARK 3 S11: -0.2194 S12: 0.4100 S13: -0.6134 REMARK 3 S21: 0.0940 S22: 0.0112 S23: 0.1900 REMARK 3 S31: 0.7256 S32: -0.5783 S33: 0.2082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1REW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 19.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ES7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, IMIDAZOLE, GLUCOSE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.18800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.09400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.14100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.04700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.23500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSYMMETRIC UNIT CONTAINS THE BIOLOGICAL ACTIVE BMP-2 REMARK 300 DIMER AND TWO BRIA MONOMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 LYS A 11 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 465 LEU B 10 REMARK 465 LYS B 11 REMARK 465 GLY C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 GLN C 1 REMARK 465 ASN C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 SER C 5 REMARK 465 MET C 6 REMARK 465 LEU C 7 REMARK 465 HIS C 8 REMARK 465 GLY C 9 REMARK 465 THR C 10 REMARK 465 GLY C 11 REMARK 465 MET C 12 REMARK 465 LYS C 13 REMARK 465 SER C 14 REMARK 465 ASP C 15 REMARK 465 SER C 16 REMARK 465 ASP C 17 REMARK 465 GLN C 18 REMARK 465 LYS C 19 REMARK 465 LYS C 20 REMARK 465 SER C 21 REMARK 465 GLU C 22 REMARK 465 ASN C 23 REMARK 465 GLY C 24 REMARK 465 VAL C 25 REMARK 465 THR C 26 REMARK 465 LEU C 27 REMARK 465 ALA C 28 REMARK 465 PRO C 29 REMARK 465 GLU C 30 REMARK 465 ASP C 31 REMARK 465 VAL C 118 REMARK 465 VAL C 119 REMARK 465 ILE C 120 REMARK 465 GLY C 121 REMARK 465 PRO C 122 REMARK 465 PHE C 123 REMARK 465 PHE C 124 REMARK 465 ASP C 125 REMARK 465 GLY C 126 REMARK 465 SER C 127 REMARK 465 ILE C 128 REMARK 465 ARG C 129 REMARK 465 GLY D -5 REMARK 465 SER D -4 REMARK 465 GLY D -3 REMARK 465 ALA D -2 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 GLN D 1 REMARK 465 ASN D 2 REMARK 465 LEU D 3 REMARK 465 ASP D 4 REMARK 465 SER D 5 REMARK 465 MET D 6 REMARK 465 LEU D 7 REMARK 465 HIS D 8 REMARK 465 GLY D 9 REMARK 465 THR D 10 REMARK 465 GLY D 11 REMARK 465 MET D 12 REMARK 465 LYS D 13 REMARK 465 SER D 14 REMARK 465 ASP D 15 REMARK 465 SER D 16 REMARK 465 ASP D 17 REMARK 465 GLN D 18 REMARK 465 LYS D 19 REMARK 465 LYS D 20 REMARK 465 SER D 21 REMARK 465 GLU D 22 REMARK 465 ASN D 23 REMARK 465 GLY D 24 REMARK 465 VAL D 25 REMARK 465 THR D 26 REMARK 465 LEU D 27 REMARK 465 ALA D 28 REMARK 465 PRO D 29 REMARK 465 GLU D 30 REMARK 465 ASP D 31 REMARK 465 GLY D 121 REMARK 465 PRO D 122 REMARK 465 PHE D 123 REMARK 465 PHE D 124 REMARK 465 ASP D 125 REMARK 465 GLY D 126 REMARK 465 SER D 127 REMARK 465 ILE D 128 REMARK 465 ARG D 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 102 OE1 GLN A 104 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 65 CD GLU C 65 OE2 0.074 REMARK 500 LEU C 106 C LEU C 106 O 0.182 REMARK 500 LEU C 106 C CYS C 107 N 0.145 REMARK 500 ASN D 51 CB ASN D 51 CG 0.185 REMARK 500 ASN D 51 CG ASN D 51 ND2 0.163 REMARK 500 ARG D 96 NE ARG D 96 CZ 0.207 REMARK 500 ARG D 96 CZ ARG D 96 NH1 0.088 REMARK 500 PRO D 117 C PRO D 117 O 0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 96 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 19 109.69 -161.31 REMARK 500 PHE A 41 172.12 64.19 REMARK 500 ASN A 56 54.44 37.34 REMARK 500 GLU A 96 33.99 79.97 REMARK 500 PHE B 41 171.83 66.38 REMARK 500 GLU B 94 23.49 -51.52 REMARK 500 ASN B 95 -1.05 -151.04 REMARK 500 GLU B 96 4.09 88.19 REMARK 500 ASP C 89 173.27 69.92 REMARK 500 LEU C 106 -5.53 81.48 REMARK 500 CYS C 107 -34.73 -38.53 REMARK 500 ASN D 50 46.28 23.54 REMARK 500 ASP D 89 177.20 66.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BMP RELATED DB: PDB REMARK 900 WILD TYPE BONE MORPHOGENETIC PROTEIN 2 REMARK 900 RELATED ID: 1ES7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE COMPLEX OF BONE MORPHOGENETIC PROTEIN 2 AND ITS REMARK 900 RECEPTOR TYPE IA EXTRACELLULAR DOMAIN REMARK 900 RELATED ID: 1REU RELATED DB: PDB DBREF 1REW A 1 114 UNP P12643 BMP2_HUMAN 283 396 DBREF 1REW B 1 114 UNP P12643 BMP2_HUMAN 283 396 DBREF 1REW C 1 129 UNP P36894 BMR1A_HUMAN 24 152 DBREF 1REW D 1 129 UNP P36894 BMR1A_HUMAN 24 152 SEQADV 1REW GLY C -5 UNP P36894 CLONING ARTIFACT SEQADV 1REW SER C -4 UNP P36894 CLONING ARTIFACT SEQADV 1REW GLY C -3 UNP P36894 CLONING ARTIFACT SEQADV 1REW ALA C -2 UNP P36894 CLONING ARTIFACT SEQADV 1REW MET C -1 UNP P36894 CLONING ARTIFACT SEQADV 1REW ALA C 0 UNP P36894 CLONING ARTIFACT SEQADV 1REW GLY D -5 UNP P36894 CLONING ARTIFACT SEQADV 1REW SER D -4 UNP P36894 CLONING ARTIFACT SEQADV 1REW GLY D -3 UNP P36894 CLONING ARTIFACT SEQADV 1REW ALA D -2 UNP P36894 CLONING ARTIFACT SEQADV 1REW MET D -1 UNP P36894 CLONING ARTIFACT SEQADV 1REW ALA D 0 UNP P36894 CLONING ARTIFACT SEQRES 1 A 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 A 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 A 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 A 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 A 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 A 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 A 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 A 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 A 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 B 114 GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SER SER SEQRES 2 B 114 CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER ASP VAL SEQRES 3 B 114 GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY TYR HIS SEQRES 4 B 114 ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO LEU ALA SEQRES 5 B 114 ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL GLN THR SEQRES 6 B 114 LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS ALA CYS SEQRES 7 B 114 CYS VAL PRO THR GLU LEU SER ALA ILE SER MET LEU TYR SEQRES 8 B 114 LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN TYR GLN SEQRES 9 B 114 ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 C 135 GLY SER GLY ALA MET ALA GLN ASN LEU ASP SER MET LEU SEQRES 2 C 135 HIS GLY THR GLY MET LYS SER ASP SER ASP GLN LYS LYS SEQRES 3 C 135 SER GLU ASN GLY VAL THR LEU ALA PRO GLU ASP THR LEU SEQRES 4 C 135 PRO PHE LEU LYS CYS TYR CYS SER GLY HIS CYS PRO ASP SEQRES 5 C 135 ASP ALA ILE ASN ASN THR CYS ILE THR ASN GLY HIS CYS SEQRES 6 C 135 PHE ALA ILE ILE GLU GLU ASP ASP GLN GLY GLU THR THR SEQRES 7 C 135 LEU ALA SER GLY CYS MET LYS TYR GLU GLY SER ASP PHE SEQRES 8 C 135 GLN CYS LYS ASP SER PRO LYS ALA GLN LEU ARG ARG THR SEQRES 9 C 135 ILE GLU CYS CYS ARG THR ASN LEU CYS ASN GLN TYR LEU SEQRES 10 C 135 GLN PRO THR LEU PRO PRO VAL VAL ILE GLY PRO PHE PHE SEQRES 11 C 135 ASP GLY SER ILE ARG SEQRES 1 D 135 GLY SER GLY ALA MET ALA GLN ASN LEU ASP SER MET LEU SEQRES 2 D 135 HIS GLY THR GLY MET LYS SER ASP SER ASP GLN LYS LYS SEQRES 3 D 135 SER GLU ASN GLY VAL THR LEU ALA PRO GLU ASP THR LEU SEQRES 4 D 135 PRO PHE LEU LYS CYS TYR CYS SER GLY HIS CYS PRO ASP SEQRES 5 D 135 ASP ALA ILE ASN ASN THR CYS ILE THR ASN GLY HIS CYS SEQRES 6 D 135 PHE ALA ILE ILE GLU GLU ASP ASP GLN GLY GLU THR THR SEQRES 7 D 135 LEU ALA SER GLY CYS MET LYS TYR GLU GLY SER ASP PHE SEQRES 8 D 135 GLN CYS LYS ASP SER PRO LYS ALA GLN LEU ARG ARG THR SEQRES 9 D 135 ILE GLU CYS CYS ARG THR ASN LEU CYS ASN GLN TYR LEU SEQRES 10 D 135 GLN PRO THR LEU PRO PRO VAL VAL ILE GLY PRO PHE PHE SEQRES 11 D 135 ASP GLY SER ILE ARG FORMUL 5 HOH *185(H2 O) HELIX 1 1 PHE A 23 GLY A 27 1 5 HELIX 2 2 ALA A 52 ASN A 56 5 5 HELIX 3 3 THR A 58 ASN A 71 1 14 HELIX 4 4 ALA B 52 ASN B 56 5 5 HELIX 5 5 THR B 58 ASN B 71 1 14 HELIX 6 6 GLY C 82 ASP C 89 1 8 HELIX 7 7 LEU C 106 LEU C 111 5 6 HELIX 8 8 GLY D 82 ASP D 89 1 8 SHEET 1 A 2 LYS A 15 HIS A 17 0 SHEET 2 A 2 TYR A 42 HIS A 44 -1 O TYR A 42 N HIS A 17 SHEET 1 B 2 TYR A 20 ASP A 22 0 SHEET 2 B 2 GLY A 37 HIS A 39 -1 O TYR A 38 N VAL A 21 SHEET 1 C 3 ILE A 32 ALA A 34 0 SHEET 2 C 3 CYS A 78 LEU A 92 -1 O LEU A 90 N ALA A 34 SHEET 3 C 3 VAL A 98 ARG A 114 -1 O TYR A 103 N ILE A 87 SHEET 1 D 2 LYS B 15 HIS B 17 0 SHEET 2 D 2 TYR B 42 HIS B 44 -1 O TYR B 42 N HIS B 17 SHEET 1 E 2 TYR B 20 ASP B 22 0 SHEET 2 E 2 GLY B 37 HIS B 39 -1 O TYR B 38 N VAL B 21 SHEET 1 F 3 ILE B 32 ALA B 34 0 SHEET 2 F 3 CYS B 78 LEU B 92 -1 O LEU B 90 N ALA B 34 SHEET 3 F 3 VAL B 98 ARG B 114 -1 O TYR B 103 N ILE B 87 SHEET 1 G 2 LEU C 36 TYR C 39 0 SHEET 2 G 2 THR C 52 THR C 55 -1 O CYS C 53 N CYS C 38 SHEET 1 H 3 THR C 71 MET C 78 0 SHEET 2 H 3 HIS C 58 GLU C 65 -1 N ILE C 62 O ALA C 74 SHEET 3 H 3 ARG C 97 CYS C 102 -1 O CYS C 102 N CYS C 59 SHEET 1 I 2 LEU D 36 TYR D 39 0 SHEET 2 I 2 THR D 52 THR D 55 -1 O CYS D 53 N CYS D 38 SHEET 1 J 3 THR D 71 MET D 78 0 SHEET 2 J 3 HIS D 58 GLU D 65 -1 N ILE D 62 O ALA D 74 SHEET 3 J 3 ARG D 97 CYS D 102 -1 O CYS D 102 N CYS D 59 SSBOND 1 CYS A 14 CYS A 79 1555 1555 2.05 SSBOND 2 CYS A 43 CYS A 111 1555 1555 2.04 SSBOND 3 CYS A 47 CYS A 113 1555 1555 2.03 SSBOND 4 CYS A 78 CYS B 78 1555 1555 2.05 SSBOND 5 CYS B 14 CYS B 79 1555 1555 2.07 SSBOND 6 CYS B 43 CYS B 111 1555 1555 2.02 SSBOND 7 CYS B 47 CYS B 113 1555 1555 2.04 SSBOND 8 CYS C 38 CYS C 59 1555 1555 2.04 SSBOND 9 CYS C 40 CYS C 44 1555 1555 2.08 SSBOND 10 CYS C 53 CYS C 77 1555 1555 2.05 SSBOND 11 CYS C 87 CYS C 101 1555 1555 2.08 SSBOND 12 CYS C 102 CYS C 107 1555 1555 2.02 SSBOND 13 CYS D 38 CYS D 59 1555 1555 2.04 SSBOND 14 CYS D 40 CYS D 44 1555 1555 2.07 SSBOND 15 CYS D 53 CYS D 77 1555 1555 2.05 SSBOND 16 CYS D 87 CYS D 101 1555 1555 2.08 SSBOND 17 CYS D 102 CYS D 107 1555 1555 2.00 CISPEP 1 ALA A 34 PRO A 35 0 -1.02 CISPEP 2 PHE A 49 PRO A 50 0 -1.96 CISPEP 3 ALA B 34 PRO B 35 0 -1.71 CISPEP 4 PHE B 49 PRO B 50 0 -3.12 CRYST1 107.493 107.493 102.282 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009303 0.005371 0.000000 0.00000 SCALE2 0.000000 0.010742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009777 0.00000 CONECT 18 532 CONECT 264 783 CONECT 293 793 CONECT 526 1332 CONECT 532 18 CONECT 783 264 CONECT 793 293 CONECT 824 1338 CONECT 1070 1589 CONECT 1099 1599 CONECT 1332 526 CONECT 1338 824 CONECT 1589 1070 CONECT 1599 1099 CONECT 1668 1820 CONECT 1686 1712 CONECT 1712 1686 CONECT 1777 1951 CONECT 1820 1668 CONECT 1951 1777 CONECT 2033 2146 CONECT 2146 2033 CONECT 2152 2192 CONECT 2192 2152 CONECT 2331 2483 CONECT 2349 2375 CONECT 2375 2349 CONECT 2440 2614 CONECT 2483 2331 CONECT 2614 2440 CONECT 2696 2809 CONECT 2809 2696 CONECT 2815 2855 CONECT 2855 2815 MASTER 545 0 0 8 24 0 0 6 3141 4 34 40 END