data_1RFR # _entry.id 1RFR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RFR pdb_00001rfr 10.2210/pdb1rfr/pdb RCSB RCSB020708 ? ? WWPDB D_1000020708 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RFR _pdbx_database_status.recvd_initial_deposition_date 2003-11-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohlenschlager, O.' 1 'Wohnert, J.' 2 'Bucci, E.' 3 'Seitz, S.' 4 'Hafner, S.' 5 'Ramachandran, R.' 6 'Zell, R.' 7 'Gorlach, M.' 8 # _citation.id primary _citation.title ;The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf RNA and its interaction with the proteinase 3C. ; _citation.journal_abbrev STRUCTURE _citation.journal_volume 12 _citation.page_first 237 _citation.page_last 248 _citation.year 2004 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14962384 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(04)00008-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohlenschlager, O.' 1 ? primary 'Wohnert, J.' 2 ? primary 'Bucci, E.' 3 ? primary 'Seitz, S.' 4 ? primary 'Hafner, S.' 5 ? primary 'Ramachandran, R.' 6 ? primary 'Zell, R.' 7 ? primary 'Gorlach, M.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description ;stemloop-D RNA of the 5'-cloverleaf of coxsackievirus B3 ; _entity.formula_weight 9536.624 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'PROTEINASE 3C BINDING DOMAIN' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCACUCUGGUAUCACGGUACCUUUGUGUC _entity_poly.pdbx_seq_one_letter_code_can GGCACUCUGGUAUCACGGUACCUUUGUGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 U n 1 9 G n 1 10 G n 1 11 U n 1 12 A n 1 13 U n 1 14 C n 1 15 A n 1 16 C n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 C n 1 22 C n 1 23 U n 1 24 U n 1 25 U n 1 26 G n 1 27 U n 1 28 G n 1 29 U n 1 30 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Enterovirus _entity_src_gen.pdbx_gene_src_gene ;5'-nontranslated region ; _entity_src_gen.gene_src_species 'Human enterovirus B' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human coxsackievirus B3' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12072 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pUC-19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ;two nucleotides (GG) at 5'-end and two nucleotides (UC) at the 3'-end were added for in vitro production ; # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RFR _struct_ref.pdbx_db_accession 1RFR _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RFR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 30 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1RFR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 30 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type 'see below' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ambient 6.2 '10mM KH2PO4/K2HPO4, 40mM KCl, 0.2mM EDTA' ? K 2 283 ambient 6.2 '10mM KH2PO4/K2HPO4, 40mM KCl, 0.2mM EDTA' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.9mM SLD-RNA U-15N,13C; 10mM KH2PO4/K2HPO4, 40mM KCl, 0.2mM EDTA' '95% H2O, 5% v/v D2O or 99.99% v/v D2O' 2 '1.2mM SLD-RNA G,C-15N,13C; 10mM KH2PO4/K2HPO4, 40mM KCl, 0.2mM EDTA' '95% H2O, 5% v/v D2O or 99.99% v/v D2O' 3 '1.2mM SLD-RNA A,U-15N,13C; 10mM KH2PO4/K2HPO4, 40mM KCl, 0.2mM EDTA' '95% H2O, 5% v/v D2O or 99.99% v/v D2O' 4 '1.4mM SLD-RNA U-15N; 10mM KH2PO4/K2HPO4, 40mM KCl, 0.2mM EDTA' '95% H2O, 5% v/v D2O or 99.99% v/v D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 600 2 ? Varian INOVA 750 # _pdbx_nmr_refine.entry_id 1RFR _pdbx_nmr_refine.method ;distance geometry/simulated annealing, energy minimisation ; _pdbx_nmr_refine.details ;1001 experimental distances derived from NOE cross peaks, 280 torsion angle constraints describing 258 torsion angles, 52 hydrogen bond constraints ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1RFR _pdbx_nmr_details.text ;the structure was determined using heteronuclear 2D and 3D NMR experiments, e.g. 3D HCCH-COSY, RELAY-COSY, TOCSY, H6/H5(C4N)H, C6/C5(C4N)H, H(CCN)H-TOCSY, HCCH-TOCSY, 2D H(N)CO, 2D CPMG-HSQC-NOESY, 2D NOESY, 3D 1H,1H,15N-NOESY-HSQC, 3D 1H,1H,13C-NOESY-HSQC, CLEAN-TOCSY, 31P-SPINECHO-DIFFERENCE-CT-HMQC, HNN-COSY, 2D 1H,13C-HSQC, 2D 1H,15N-HSQC, HCN, H5(C5C4N)H, H8(C8C2)H2, 3D 13C-F1-FILTERED,13C-F3-EDITED-NOESY-HSQC ; # _pdbx_nmr_ensemble.entry_id 1RFR _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy,target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1RFR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR '6.1, rev. c' collection 'Varian Inc.' 1 VNMR '6.1, rev. c' processing 'Varian Inc.' 2 XEASY 1.3.9 'data analysis' Bartels 3 FOUND 'implemented in CYANA-1.0.6' 'structure solution' Guntert 4 CYANA 1.0.6 'structure solution' Herrmann 5 OPAL 2.6 refinement Luginbuhl 6 # _exptl.entry_id 1RFR _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.density_Matthews ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1RFR _struct.title 'NMR structure of the 30mer stemloop-D of coxsackieviral RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RFR _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;loop with conformation similar to stable UNCG-tetraloops and U:G closing base pair, base-paired U:U-C:U-U:U mismatch, A-form helix stems, RNA ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 1 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 1 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 1 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 29 O2 ? ? A G 2 A U 29 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 29 N3 ? ? A G 2 A U 29 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 3 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 3 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 3 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 4 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 4 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 5 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 5 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 5 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A U 25 O4 ? ? A U 6 A U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 A U 25 N3 ? ? A U 6 A U 25 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 A U 24 N3 ? ? A C 7 A U 24 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 A U 24 O4 ? ? A C 7 A U 24 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A U 23 O2 ? ? A U 8 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A U 23 N3 ? ? A U 8 A U 23 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 9 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 10 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 10 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 10 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 11 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 11 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 19 N3 ? ? A A 12 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 12 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 13 N3 ? ? ? 1_555 A G 18 O6 ? ? A U 13 A G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog31 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 18 N1 ? ? A U 13 A G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 17 N1 ? ? A C 14 A G 17 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1RFR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RFR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 A 12 12 12 A A A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 A 20 20 20 A A A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.07 108.50 5.57 0.70 N 2 1 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 113.57 108.50 5.07 0.70 N 3 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.78 108.50 5.28 0.70 N 4 1 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.24 108.50 4.74 0.70 N 5 1 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 112.84 108.50 4.34 0.70 N 6 1 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.65 108.50 5.15 0.70 N 7 1 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.30 108.50 5.80 0.70 N 8 1 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.05 108.50 4.55 0.70 N 9 1 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 112.81 108.50 4.31 0.70 N 10 1 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.29 108.50 4.79 0.70 N 11 2 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.55 108.50 6.05 0.70 N 12 2 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.79 108.50 5.29 0.70 N 13 2 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.17 108.50 4.67 0.70 N 14 2 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.72 108.50 4.22 0.70 N 15 2 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 112.86 108.50 4.36 0.70 N 16 2 "C1'" A G 17 ? ? "O4'" A G 17 ? ? "C4'" A G 17 ? ? 105.36 109.70 -4.34 0.70 N 17 2 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 113.32 108.50 4.82 0.70 N 18 2 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 114.25 108.50 5.75 0.70 N 19 2 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.53 108.50 6.03 0.70 N 20 2 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.24 108.50 4.74 0.70 N 21 2 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 113.27 108.50 4.77 0.70 N 22 2 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.49 108.50 4.99 0.70 N 23 3 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.59 108.50 6.09 0.70 N 24 3 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.94 108.50 5.44 0.70 N 25 3 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.31 108.50 4.81 0.70 N 26 3 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.99 108.50 5.49 0.70 N 27 3 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.15 108.50 5.65 0.70 N 28 3 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.97 108.50 4.47 0.70 N 29 3 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 114.89 108.50 6.39 0.70 N 30 4 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.91 108.50 4.41 0.70 N 31 4 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.35 108.50 5.85 0.70 N 32 4 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 113.40 108.50 4.90 0.70 N 33 4 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.46 108.50 4.96 0.70 N 34 4 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.77 108.50 4.27 0.70 N 35 4 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.15 108.50 4.65 0.70 N 36 4 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 114.11 108.50 5.61 0.70 N 37 4 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.81 108.50 5.31 0.70 N 38 4 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.30 108.50 5.80 0.70 N 39 4 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.03 108.50 4.53 0.70 N 40 4 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 112.93 108.50 4.43 0.70 N 41 4 "O4'" A U 25 ? ? "C1'" A U 25 ? ? N1 A U 25 ? ? 112.89 108.50 4.39 0.70 N 42 4 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 112.75 108.50 4.25 0.70 N 43 4 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.39 108.50 4.89 0.70 N 44 5 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.83 108.50 5.33 0.70 N 45 5 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 113.14 108.50 4.64 0.70 N 46 5 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.63 108.50 5.13 0.70 N 47 5 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.84 108.50 4.34 0.70 N 48 5 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.31 108.50 4.81 0.70 N 49 5 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.77 108.50 5.27 0.70 N 50 5 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.45 108.50 5.95 0.70 N 51 5 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.98 108.50 4.48 0.70 N 52 5 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 114.94 108.50 6.44 0.70 N 53 6 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.51 108.50 6.01 0.70 N 54 6 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.83 108.50 5.33 0.70 N 55 6 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.31 108.50 4.81 0.70 N 56 6 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.43 108.50 4.93 0.70 N 57 6 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.24 108.50 5.74 0.70 N 58 6 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.80 108.50 4.30 0.70 N 59 6 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 113.29 108.50 4.79 0.70 N 60 6 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 112.70 108.50 4.20 0.70 N 61 6 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.55 108.50 5.05 0.70 N 62 7 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.24 108.50 5.74 0.70 N 63 7 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.60 108.50 5.10 0.70 N 64 7 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.74 108.50 4.24 0.70 N 65 7 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.74 108.50 4.24 0.70 N 66 7 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.40 108.50 4.90 0.70 N 67 7 "C1'" A G 17 ? ? "O4'" A G 17 ? ? "C4'" A G 17 ? ? 105.28 109.70 -4.42 0.70 N 68 7 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 113.72 108.50 5.22 0.70 N 69 7 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.84 108.50 5.34 0.70 N 70 7 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.44 108.50 5.94 0.70 N 71 7 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.18 108.50 4.68 0.70 N 72 7 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 112.72 108.50 4.22 0.70 N 73 7 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.62 108.50 5.12 0.70 N 74 8 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.87 108.50 5.37 0.70 N 75 8 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 113.26 108.50 4.76 0.70 N 76 8 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.57 108.50 5.07 0.70 N 77 8 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.01 108.50 4.51 0.70 N 78 8 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.77 108.50 4.27 0.70 N 79 8 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.20 108.50 4.70 0.70 N 80 8 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 112.71 108.50 4.21 0.70 N 81 8 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 114.32 108.50 5.82 0.70 N 82 8 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.39 108.50 5.89 0.70 N 83 8 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.08 108.50 4.58 0.70 N 84 8 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.44 108.50 4.94 0.70 N 85 9 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.19 108.50 5.69 0.70 N 86 9 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.73 108.50 5.23 0.70 N 87 9 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.70 108.50 4.20 0.70 N 88 9 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.38 108.50 4.88 0.70 N 89 9 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 113.03 108.50 4.53 0.70 N 90 9 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 114.37 108.50 5.87 0.70 N 91 9 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.47 108.50 5.97 0.70 N 92 9 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.05 108.50 4.55 0.70 N 93 9 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 113.07 108.50 4.57 0.70 N 94 9 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.55 108.50 5.05 0.70 N 95 10 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.38 108.50 5.88 0.70 N 96 10 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 113.35 108.50 4.85 0.70 N 97 10 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.47 108.50 4.97 0.70 N 98 10 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.73 108.50 4.23 0.70 N 99 10 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.47 108.50 4.97 0.70 N 100 10 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.50 108.50 5.00 0.70 N 101 10 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 113.96 108.50 5.46 0.70 N 102 10 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.79 108.50 4.29 0.70 N 103 10 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 112.90 108.50 4.40 0.70 N 104 10 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.57 108.50 5.07 0.70 N 105 11 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.47 108.50 5.97 0.70 N 106 11 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.88 108.50 5.38 0.70 N 107 11 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.36 108.50 4.86 0.70 N 108 11 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 113.11 108.50 4.61 0.70 N 109 11 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 114.02 108.50 5.52 0.70 N 110 11 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.77 108.50 6.27 0.70 N 111 11 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.10 108.50 4.60 0.70 N 112 11 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.54 108.50 5.04 0.70 N 113 12 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.42 108.50 5.92 0.70 N 114 12 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 113.83 108.50 5.33 0.70 N 115 12 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.87 108.50 5.37 0.70 N 116 12 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.83 108.50 4.33 0.70 N 117 12 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.31 108.50 4.81 0.70 N 118 12 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.48 108.50 4.98 0.70 N 119 12 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.28 108.50 5.78 0.70 N 120 12 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.83 108.50 4.33 0.70 N 121 12 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 113.27 108.50 4.77 0.70 N 122 12 "O4'" A G 26 ? ? "C1'" A G 26 ? ? N9 A G 26 ? ? 113.46 108.50 4.96 0.70 N 123 12 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.50 108.50 5.00 0.70 N 124 13 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.29 108.50 5.79 0.70 N 125 13 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.41 108.50 4.91 0.70 N 126 13 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.38 108.50 4.88 0.70 N 127 13 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.58 108.50 5.08 0.70 N 128 13 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.29 108.50 5.79 0.70 N 129 13 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.11 108.50 4.61 0.70 N 130 13 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 112.78 108.50 4.28 0.70 N 131 13 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.22 108.50 4.72 0.70 N 132 14 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.97 108.50 4.47 0.70 N 133 14 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.41 108.50 5.91 0.70 N 134 14 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.80 108.50 5.30 0.70 N 135 14 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.71 108.50 4.21 0.70 N 136 14 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.17 108.50 4.67 0.70 N 137 14 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 114.04 108.50 5.54 0.70 N 138 14 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.67 108.50 5.17 0.70 N 139 14 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.27 108.50 5.77 0.70 N 140 14 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.98 108.50 4.48 0.70 N 141 14 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.47 108.50 4.97 0.70 N 142 15 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.89 108.50 4.39 0.70 N 143 15 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.48 108.50 5.98 0.70 N 144 15 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.95 108.50 5.45 0.70 N 145 15 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.89 108.50 4.39 0.70 N 146 15 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.73 108.50 4.23 0.70 N 147 15 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.26 108.50 4.76 0.70 N 148 15 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.66 108.50 5.16 0.70 N 149 15 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.50 108.50 6.00 0.70 N 150 15 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.07 108.50 4.57 0.70 N 151 15 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 113.29 108.50 4.79 0.70 N 152 15 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.46 108.50 4.96 0.70 N 153 16 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.75 108.50 4.25 0.70 N 154 16 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.66 108.50 6.16 0.70 N 155 16 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.89 108.50 5.39 0.70 N 156 16 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.75 108.50 4.25 0.70 N 157 16 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.81 108.50 4.31 0.70 N 158 16 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.26 108.50 4.76 0.70 N 159 16 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.72 108.50 5.22 0.70 N 160 16 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.60 108.50 6.10 0.70 N 161 16 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.04 108.50 4.54 0.70 N 162 16 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.35 108.50 4.85 0.70 N 163 17 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.43 108.50 5.93 0.70 N 164 17 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.49 108.50 4.99 0.70 N 165 17 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.79 108.50 4.29 0.70 N 166 17 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.29 108.50 4.79 0.70 N 167 17 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 113.46 108.50 4.96 0.70 N 168 17 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 114.09 108.50 5.59 0.70 N 169 17 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.26 108.50 5.76 0.70 N 170 17 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.01 108.50 4.51 0.70 N 171 17 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 113.24 108.50 4.74 0.70 N 172 17 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.48 108.50 4.98 0.70 N 173 18 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.66 108.50 6.16 0.70 N 174 18 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.66 108.50 5.16 0.70 N 175 18 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.87 108.50 4.37 0.70 N 176 18 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.96 108.50 4.46 0.70 N 177 18 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 112.87 108.50 4.37 0.70 N 178 18 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.69 108.50 5.19 0.70 N 179 18 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.41 108.50 5.91 0.70 N 180 18 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.08 108.50 4.58 0.70 N 181 18 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 112.78 108.50 4.28 0.70 N 182 18 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.67 108.50 5.17 0.70 N 183 19 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.55 108.50 6.05 0.70 N 184 19 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.44 108.50 4.94 0.70 N 185 19 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.76 108.50 4.26 0.70 N 186 19 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 113.14 108.50 4.64 0.70 N 187 19 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 112.87 108.50 4.37 0.70 N 188 19 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.96 108.50 5.46 0.70 N 189 19 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.45 108.50 5.95 0.70 N 190 19 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.92 108.50 4.42 0.70 N 191 19 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.57 108.50 5.07 0.70 N 192 20 "O4'" A C 5 ? ? "C1'" A C 5 ? ? N1 A C 5 ? ? 114.58 108.50 6.08 0.70 N 193 20 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 113.89 108.50 5.39 0.70 N 194 20 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 112.71 108.50 4.21 0.70 N 195 20 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 112.81 108.50 4.31 0.70 N 196 20 "O4'" A U 11 ? ? "C1'" A U 11 ? ? N1 A U 11 ? ? 112.90 108.50 4.40 0.70 N 197 20 "O4'" A G 17 ? ? "C1'" A G 17 ? ? N9 A G 17 ? ? 113.55 108.50 5.05 0.70 N 198 20 "O4'" A C 21 ? ? "C1'" A C 21 ? ? N1 A C 21 ? ? 113.72 108.50 5.22 0.70 N 199 20 "O4'" A C 22 ? ? "C1'" A C 22 ? ? N1 A C 22 ? ? 114.28 108.50 5.78 0.70 N 200 20 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 113.05 108.50 4.55 0.70 N 201 20 "O4'" A U 24 ? ? "C1'" A U 24 ? ? N1 A U 24 ? ? 112.76 108.50 4.26 0.70 N 202 20 "O4'" A U 27 ? ? "C1'" A U 27 ? ? N1 A U 27 ? ? 113.40 108.50 4.90 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 3 ? ? 0.072 'SIDE CHAIN' 2 1 U A 8 ? ? 0.065 'SIDE CHAIN' 3 1 A A 12 ? ? 0.060 'SIDE CHAIN' 4 1 U A 13 ? ? 0.099 'SIDE CHAIN' 5 1 U A 19 ? ? 0.062 'SIDE CHAIN' 6 1 C A 21 ? ? 0.060 'SIDE CHAIN' 7 1 U A 24 ? ? 0.083 'SIDE CHAIN' 8 2 A A 4 ? ? 0.052 'SIDE CHAIN' 9 2 U A 6 ? ? 0.061 'SIDE CHAIN' 10 2 A A 12 ? ? 0.063 'SIDE CHAIN' 11 2 U A 13 ? ? 0.099 'SIDE CHAIN' 12 2 U A 24 ? ? 0.093 'SIDE CHAIN' 13 3 C A 3 ? ? 0.068 'SIDE CHAIN' 14 3 U A 6 ? ? 0.061 'SIDE CHAIN' 15 3 U A 8 ? ? 0.064 'SIDE CHAIN' 16 3 A A 12 ? ? 0.057 'SIDE CHAIN' 17 3 U A 13 ? ? 0.097 'SIDE CHAIN' 18 3 C A 21 ? ? 0.062 'SIDE CHAIN' 19 3 U A 24 ? ? 0.076 'SIDE CHAIN' 20 4 C A 3 ? ? 0.067 'SIDE CHAIN' 21 4 U A 6 ? ? 0.061 'SIDE CHAIN' 22 4 U A 8 ? ? 0.068 'SIDE CHAIN' 23 4 A A 12 ? ? 0.059 'SIDE CHAIN' 24 4 U A 13 ? ? 0.097 'SIDE CHAIN' 25 4 C A 21 ? ? 0.062 'SIDE CHAIN' 26 4 U A 24 ? ? 0.087 'SIDE CHAIN' 27 5 A A 4 ? ? 0.050 'SIDE CHAIN' 28 5 A A 12 ? ? 0.060 'SIDE CHAIN' 29 5 U A 13 ? ? 0.093 'SIDE CHAIN' 30 5 U A 24 ? ? 0.073 'SIDE CHAIN' 31 6 C A 3 ? ? 0.061 'SIDE CHAIN' 32 6 A A 4 ? ? 0.062 'SIDE CHAIN' 33 6 U A 8 ? ? 0.072 'SIDE CHAIN' 34 6 U A 13 ? ? 0.086 'SIDE CHAIN' 35 6 U A 24 ? ? 0.084 'SIDE CHAIN' 36 7 A A 4 ? ? 0.056 'SIDE CHAIN' 37 7 U A 8 ? ? 0.063 'SIDE CHAIN' 38 7 A A 12 ? ? 0.063 'SIDE CHAIN' 39 7 U A 13 ? ? 0.103 'SIDE CHAIN' 40 7 U A 19 ? ? 0.067 'SIDE CHAIN' 41 7 A A 20 ? ? 0.051 'SIDE CHAIN' 42 7 C A 21 ? ? 0.064 'SIDE CHAIN' 43 7 U A 24 ? ? 0.090 'SIDE CHAIN' 44 8 A A 12 ? ? 0.058 'SIDE CHAIN' 45 8 U A 13 ? ? 0.096 'SIDE CHAIN' 46 8 C A 21 ? ? 0.061 'SIDE CHAIN' 47 8 U A 24 ? ? 0.081 'SIDE CHAIN' 48 9 U A 6 ? ? 0.060 'SIDE CHAIN' 49 9 U A 8 ? ? 0.066 'SIDE CHAIN' 50 9 A A 12 ? ? 0.066 'SIDE CHAIN' 51 9 U A 13 ? ? 0.100 'SIDE CHAIN' 52 9 U A 19 ? ? 0.081 'SIDE CHAIN' 53 9 A A 20 ? ? 0.052 'SIDE CHAIN' 54 9 C A 21 ? ? 0.064 'SIDE CHAIN' 55 9 U A 24 ? ? 0.086 'SIDE CHAIN' 56 10 C A 3 ? ? 0.074 'SIDE CHAIN' 57 10 U A 13 ? ? 0.092 'SIDE CHAIN' 58 10 C A 21 ? ? 0.063 'SIDE CHAIN' 59 10 U A 24 ? ? 0.074 'SIDE CHAIN' 60 11 A A 4 ? ? 0.064 'SIDE CHAIN' 61 11 U A 8 ? ? 0.070 'SIDE CHAIN' 62 11 U A 13 ? ? 0.092 'SIDE CHAIN' 63 11 C A 21 ? ? 0.062 'SIDE CHAIN' 64 11 U A 24 ? ? 0.078 'SIDE CHAIN' 65 12 C A 3 ? ? 0.068 'SIDE CHAIN' 66 12 U A 6 ? ? 0.061 'SIDE CHAIN' 67 12 U A 13 ? ? 0.091 'SIDE CHAIN' 68 12 U A 24 ? ? 0.094 'SIDE CHAIN' 69 13 U A 8 ? ? 0.070 'SIDE CHAIN' 70 13 A A 12 ? ? 0.062 'SIDE CHAIN' 71 13 U A 13 ? ? 0.096 'SIDE CHAIN' 72 13 C A 21 ? ? 0.059 'SIDE CHAIN' 73 13 U A 24 ? ? 0.081 'SIDE CHAIN' 74 14 A A 4 ? ? 0.055 'SIDE CHAIN' 75 14 A A 12 ? ? 0.058 'SIDE CHAIN' 76 14 U A 13 ? ? 0.099 'SIDE CHAIN' 77 14 U A 19 ? ? 0.061 'SIDE CHAIN' 78 14 C A 21 ? ? 0.061 'SIDE CHAIN' 79 14 U A 24 ? ? 0.077 'SIDE CHAIN' 80 14 G A 28 ? ? 0.058 'SIDE CHAIN' 81 14 C A 30 ? ? 0.062 'SIDE CHAIN' 82 15 A A 12 ? ? 0.059 'SIDE CHAIN' 83 15 U A 13 ? ? 0.088 'SIDE CHAIN' 84 15 U A 24 ? ? 0.089 'SIDE CHAIN' 85 15 G A 28 ? ? 0.056 'SIDE CHAIN' 86 16 U A 8 ? ? 0.064 'SIDE CHAIN' 87 16 A A 12 ? ? 0.061 'SIDE CHAIN' 88 16 U A 13 ? ? 0.093 'SIDE CHAIN' 89 16 U A 24 ? ? 0.082 'SIDE CHAIN' 90 16 G A 28 ? ? 0.055 'SIDE CHAIN' 91 17 C A 3 ? ? 0.065 'SIDE CHAIN' 92 17 A A 12 ? ? 0.061 'SIDE CHAIN' 93 17 U A 13 ? ? 0.092 'SIDE CHAIN' 94 17 C A 21 ? ? 0.064 'SIDE CHAIN' 95 18 C A 3 ? ? 0.066 'SIDE CHAIN' 96 18 A A 4 ? ? 0.057 'SIDE CHAIN' 97 18 U A 6 ? ? 0.061 'SIDE CHAIN' 98 18 U A 8 ? ? 0.063 'SIDE CHAIN' 99 18 G A 10 ? ? 0.056 'SIDE CHAIN' 100 18 A A 12 ? ? 0.060 'SIDE CHAIN' 101 18 U A 13 ? ? 0.090 'SIDE CHAIN' 102 18 C A 21 ? ? 0.060 'SIDE CHAIN' 103 18 U A 24 ? ? 0.099 'SIDE CHAIN' 104 18 G A 28 ? ? 0.057 'SIDE CHAIN' 105 19 C A 3 ? ? 0.068 'SIDE CHAIN' 106 19 A A 4 ? ? 0.058 'SIDE CHAIN' 107 19 A A 12 ? ? 0.061 'SIDE CHAIN' 108 19 U A 13 ? ? 0.095 'SIDE CHAIN' 109 19 G A 28 ? ? 0.055 'SIDE CHAIN' 110 20 U A 8 ? ? 0.067 'SIDE CHAIN' 111 20 A A 12 ? ? 0.064 'SIDE CHAIN' 112 20 U A 13 ? ? 0.094 'SIDE CHAIN' 113 20 C A 21 ? ? 0.067 'SIDE CHAIN' 114 20 U A 24 ? ? 0.076 'SIDE CHAIN' 115 20 G A 28 ? ? 0.058 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1RFR 'double helix' 1RFR 'a-form double helix' 1RFR 'hairpin loop' 1RFR 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 30 1_555 -0.670 -0.241 -0.400 -10.857 -4.216 -1.653 1 A_G1:C30_A A 1 ? A 30 ? 19 1 1 A G 2 1_555 A U 29 1_555 -1.642 -0.317 0.431 -0.426 -8.982 2.772 2 A_G2:U29_A A 2 ? A 29 ? 28 1 1 A C 3 1_555 A G 28 1_555 0.240 -0.156 0.091 6.754 -20.878 -2.858 3 A_C3:G28_A A 3 ? A 28 ? 19 1 1 A A 4 1_555 A U 27 1_555 0.029 0.039 0.351 17.754 -9.572 -8.010 4 A_A4:U27_A A 4 ? A 27 ? 20 1 1 A C 5 1_555 A G 26 1_555 0.307 -0.058 -0.267 26.815 -18.009 -1.758 5 A_C5:G26_A A 5 ? A 26 ? 19 1 1 A U 6 1_555 A U 25 1_555 2.264 -1.777 -0.079 6.358 -28.184 16.782 6 A_U6:U25_A A 6 ? A 25 ? 16 1 1 A C 7 1_555 A U 24 1_555 1.058 -1.799 0.177 -7.982 -21.613 12.582 7 A_C7:U24_A A 7 ? A 24 ? 18 1 1 A U 8 1_555 A U 23 1_555 -2.567 -1.772 0.346 -4.440 -20.559 5.412 8 A_U8:U23_A A 8 ? A 23 ? 16 1 1 A G 9 1_555 A C 22 1_555 -0.363 -0.193 0.324 -0.507 -17.096 -2.620 9 A_G9:C22_A A 9 ? A 22 ? 19 1 1 A G 10 1_555 A C 21 1_555 -0.366 -0.199 0.321 -2.758 -18.424 -3.306 10 A_G10:C21_A A 10 ? A 21 ? 19 1 1 A U 11 1_555 A A 20 1_555 0.337 -0.146 0.234 -6.896 -21.722 -6.057 11 A_U11:A20_A A 11 ? A 20 ? 20 1 1 A A 12 1_555 A U 19 1_555 0.244 0.005 0.278 2.795 -18.521 -8.890 12 A_A12:U19_A A 12 ? A 19 ? 20 1 1 A U 13 1_555 A G 18 1_555 2.030 -0.358 -0.123 17.328 -20.920 2.510 13 A_U13:G18_A A 13 ? A 18 ? 28 1 1 A C 14 1_555 A G 17 1_555 0.644 -5.401 0.315 -19.783 -22.225 -109.511 14 A_C14:G17_A A 14 ? A 17 ? ? 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 30 1_555 A G 2 1_555 A U 29 1_555 0.700 -1.923 2.925 -4.285 2.538 23.260 -5.371 -2.889 2.535 6.204 10.474 23.781 1 AA_G1G2:U29C30_AA A 1 ? A 30 ? A 2 ? A 29 ? 1 A G 2 1_555 A U 29 1_555 A C 3 1_555 A G 28 1_555 0.037 -1.313 3.288 6.791 -4.151 39.671 -1.422 0.729 3.364 -6.043 -9.886 40.430 2 AA_G2C3:G28U29_AA A 2 ? A 29 ? A 3 ? A 28 ? 1 A C 3 1_555 A G 28 1_555 A A 4 1_555 A U 27 1_555 0.488 -1.210 3.130 -0.102 4.009 21.789 -4.555 -1.306 2.861 10.491 0.267 22.151 3 AA_C3A4:U27G28_AA A 3 ? A 28 ? A 4 ? A 27 ? 1 A A 4 1_555 A U 27 1_555 A C 5 1_555 A G 26 1_555 0.431 -1.258 3.133 1.221 -2.600 34.296 -1.731 -0.544 3.230 -4.399 -2.066 34.412 4 AA_A4C5:G26U27_AA A 4 ? A 27 ? A 5 ? A 26 ? 1 A C 5 1_555 A G 26 1_555 A U 6 1_555 A U 25 1_555 0.947 -1.020 3.894 1.657 10.214 41.387 -2.601 -1.109 3.589 14.186 -2.301 42.606 5 AA_C5U6:U25G26_AA A 5 ? A 26 ? A 6 ? A 25 ? 1 A U 6 1_555 A U 25 1_555 A C 7 1_555 A U 24 1_555 -0.478 -0.639 3.461 -0.325 13.348 32.503 -3.114 0.743 2.983 22.691 0.553 35.070 6 AA_U6C7:U24U25_AA A 6 ? A 25 ? A 7 ? A 24 ? 1 A C 7 1_555 A U 24 1_555 A U 8 1_555 A U 23 1_555 -0.947 -1.508 3.011 -5.095 3.432 23.807 -4.515 0.783 2.904 8.146 12.095 24.576 7 AA_C7U8:U23U24_AA A 7 ? A 24 ? A 8 ? A 23 ? 1 A U 8 1_555 A U 23 1_555 A G 9 1_555 A C 22 1_555 -0.430 -0.733 3.175 -1.680 2.763 42.795 -1.267 0.427 3.138 3.781 2.298 42.911 8 AA_U8G9:C22U23_AA A 8 ? A 23 ? A 9 ? A 22 ? 1 A G 9 1_555 A C 22 1_555 A G 10 1_555 A C 21 1_555 0.006 -1.384 3.293 1.120 2.339 31.877 -2.932 0.190 3.185 4.249 -2.034 31.980 9 AA_G9G10:C21C22_AA A 9 ? A 22 ? A 10 ? A 21 ? 1 A G 10 1_555 A C 21 1_555 A U 11 1_555 A A 20 1_555 -0.326 -1.360 3.379 2.462 -1.773 35.889 -1.939 0.892 3.411 -2.871 -3.987 36.012 10 AA_G10U11:A20C21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A U 11 1_555 A A 20 1_555 A A 12 1_555 A U 19 1_555 0.056 -0.062 3.101 1.421 3.842 32.062 -0.757 0.138 3.073 6.921 -2.560 32.316 11 AA_U11A12:U19A20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A A 12 1_555 A U 19 1_555 A U 13 1_555 A G 18 1_555 0.170 -0.653 3.014 1.211 0.330 41.143 -0.962 -0.121 3.013 0.469 -1.723 41.161 12 AA_A12U13:G18U19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 A U 13 1_555 A G 18 1_555 A C 14 1_555 A G 17 1_555 -1.624 -0.417 3.637 0.914 11.102 95.817 -0.491 1.107 3.575 7.461 -0.614 96.305 13 AA_U13C14:G17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? #