data_1RFY # _entry.id 1RFY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1RFY pdb_00001rfy 10.2210/pdb1rfy/pdb RCSB RCSB020714 ? ? WWPDB D_1000020714 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RFY _pdbx_database_status.recvd_initial_deposition_date 2003-11-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, G.' 1 'Malenkos, J.W.' 2 'Cha, M.R.' 3 'Fuqua, C.' 4 'Chen, L.' 5 # _citation.id primary _citation.title 'Quorum-sensing antiactivator TraM forms a dimer that dissociates to inhibit TraR' _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 52 _citation.page_first 1641 _citation.page_last 1651 _citation.year 2004 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15186414 _citation.pdbx_database_id_DOI 10.1111/j.1365-2958.2004.04110.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, G.' 1 ? primary 'Malenkos, J.W.' 2 ? primary 'Cha, M.R.' 3 ? primary 'Fuqua, C.' 4 ? primary 'Chen, L.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional repressor traM' 11365.187 2 ? ? ? ? 2 water nat water 18.015 230 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Quorum-sensing antiactivator TraM; traM protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MELEDANVTKKVELRPLIGLTRGLPPTDLETITIDAIRTHRRLVEKADELFQALPETYKTGQACGGPQHIRYIEASIEMH AQMSALNTLISILGFIPKVVVN ; _entity_poly.pdbx_seq_one_letter_code_can ;MELEDANVTKKVELRPLIGLTRGLPPTDLETITIDAIRTHRRLVEKADELFQALPETYKTGQACGGPQHIRYIEASIEMH AQMSALNTLISILGFIPKVVVN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 GLU n 1 5 ASP n 1 6 ALA n 1 7 ASN n 1 8 VAL n 1 9 THR n 1 10 LYS n 1 11 LYS n 1 12 VAL n 1 13 GLU n 1 14 LEU n 1 15 ARG n 1 16 PRO n 1 17 LEU n 1 18 ILE n 1 19 GLY n 1 20 LEU n 1 21 THR n 1 22 ARG n 1 23 GLY n 1 24 LEU n 1 25 PRO n 1 26 PRO n 1 27 THR n 1 28 ASP n 1 29 LEU n 1 30 GLU n 1 31 THR n 1 32 ILE n 1 33 THR n 1 34 ILE n 1 35 ASP n 1 36 ALA n 1 37 ILE n 1 38 ARG n 1 39 THR n 1 40 HIS n 1 41 ARG n 1 42 ARG n 1 43 LEU n 1 44 VAL n 1 45 GLU n 1 46 LYS n 1 47 ALA n 1 48 ASP n 1 49 GLU n 1 50 LEU n 1 51 PHE n 1 52 GLN n 1 53 ALA n 1 54 LEU n 1 55 PRO n 1 56 GLU n 1 57 THR n 1 58 TYR n 1 59 LYS n 1 60 THR n 1 61 GLY n 1 62 GLN n 1 63 ALA n 1 64 CYS n 1 65 GLY n 1 66 GLY n 1 67 PRO n 1 68 GLN n 1 69 HIS n 1 70 ILE n 1 71 ARG n 1 72 TYR n 1 73 ILE n 1 74 GLU n 1 75 ALA n 1 76 SER n 1 77 ILE n 1 78 GLU n 1 79 MET n 1 80 HIS n 1 81 ALA n 1 82 GLN n 1 83 MET n 1 84 SER n 1 85 ALA n 1 86 LEU n 1 87 ASN n 1 88 THR n 1 89 LEU n 1 90 ILE n 1 91 SER n 1 92 ILE n 1 93 LEU n 1 94 GLY n 1 95 PHE n 1 96 ILE n 1 97 PRO n 1 98 LYS n 1 99 VAL n 1 100 VAL n 1 101 VAL n 1 102 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Agrobacterium _entity_src_gen.pdbx_gene_src_gene traM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Agrobacterium tumefaciens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 358 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21DE3 K12' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 ASN 7 7 ? ? ? A . n A 1 8 VAL 8 8 ? ? ? A . n A 1 9 THR 9 9 ? ? ? A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 VAL 99 99 ? ? ? A . n A 1 100 VAL 100 100 ? ? ? A . n A 1 101 VAL 101 101 ? ? ? A . n A 1 102 ASN 102 102 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 GLU 2 2 ? ? ? B . n B 1 3 LEU 3 3 ? ? ? B . n B 1 4 GLU 4 4 ? ? ? B . n B 1 5 ASP 5 5 ? ? ? B . n B 1 6 ALA 6 6 ? ? ? B . n B 1 7 ASN 7 7 ? ? ? B . n B 1 8 VAL 8 8 ? ? ? B . n B 1 9 THR 9 9 ? ? ? B . n B 1 10 LYS 10 10 ? ? ? B . n B 1 11 LYS 11 11 ? ? ? B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 THR 27 27 27 THR THR B . n B 1 28 ASP 28 28 28 ASP ASP B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 GLU 30 30 30 GLU GLU B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 ILE 32 32 32 ILE ILE B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 HIS 40 40 40 HIS HIS B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 PHE 51 51 51 PHE PHE B . n B 1 52 GLN 52 52 52 GLN GLN B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 TYR 58 58 58 TYR TYR B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 GLY 61 61 61 GLY GLY B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 CYS 64 64 64 CYS CYS B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 PRO 67 67 67 PRO PRO B . n B 1 68 GLN 68 68 68 GLN GLN B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 ILE 70 70 70 ILE ILE B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 TYR 72 72 72 TYR TYR B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 SER 76 76 76 SER SER B . n B 1 77 ILE 77 77 77 ILE ILE B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 MET 79 79 79 MET MET B . n B 1 80 HIS 80 80 80 HIS HIS B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 GLN 82 82 82 GLN GLN B . n B 1 83 MET 83 83 83 MET MET B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 ALA 85 85 85 ALA ALA B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 THR 88 88 88 THR THR B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 ILE 90 90 90 ILE ILE B . n B 1 91 SER 91 91 91 SER SER B . n B 1 92 ILE 92 92 92 ILE ILE B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 ILE 96 96 96 ILE ILE B . n B 1 97 PRO 97 97 97 PRO PRO B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 VAL 99 99 99 VAL VAL B . n B 1 100 VAL 100 100 ? ? ? B . n B 1 101 VAL 101 101 ? ? ? B . n B 1 102 ASN 102 102 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 103 4 HOH HOH A . C 2 HOH 2 104 6 HOH HOH A . C 2 HOH 3 105 7 HOH HOH A . C 2 HOH 4 106 8 HOH HOH A . C 2 HOH 5 107 9 HOH HOH A . C 2 HOH 6 108 13 HOH HOH A . C 2 HOH 7 109 14 HOH HOH A . C 2 HOH 8 110 15 HOH HOH A . C 2 HOH 9 111 18 HOH HOH A . C 2 HOH 10 112 20 HOH HOH A . C 2 HOH 11 113 22 HOH HOH A . C 2 HOH 12 114 24 HOH HOH A . C 2 HOH 13 115 26 HOH HOH A . C 2 HOH 14 116 29 HOH HOH A . C 2 HOH 15 117 31 HOH HOH A . C 2 HOH 16 118 32 HOH HOH A . C 2 HOH 17 119 37 HOH HOH A . C 2 HOH 18 120 38 HOH HOH A . C 2 HOH 19 121 42 HOH HOH A . C 2 HOH 20 122 43 HOH HOH A . C 2 HOH 21 123 45 HOH HOH A . C 2 HOH 22 124 46 HOH HOH A . C 2 HOH 23 125 48 HOH HOH A . C 2 HOH 24 126 49 HOH HOH A . C 2 HOH 25 127 51 HOH HOH A . C 2 HOH 26 128 53 HOH HOH A . C 2 HOH 27 129 54 HOH HOH A . C 2 HOH 28 130 55 HOH HOH A . C 2 HOH 29 131 56 HOH HOH A . C 2 HOH 30 132 57 HOH HOH A . C 2 HOH 31 133 60 HOH HOH A . C 2 HOH 32 134 61 HOH HOH A . C 2 HOH 33 135 68 HOH HOH A . C 2 HOH 34 136 69 HOH HOH A . C 2 HOH 35 137 71 HOH HOH A . C 2 HOH 36 138 75 HOH HOH A . C 2 HOH 37 139 76 HOH HOH A . C 2 HOH 38 140 77 HOH HOH A . C 2 HOH 39 141 80 HOH HOH A . C 2 HOH 40 142 83 HOH HOH A . C 2 HOH 41 143 84 HOH HOH A . C 2 HOH 42 144 86 HOH HOH A . C 2 HOH 43 145 87 HOH HOH A . C 2 HOH 44 146 91 HOH HOH A . C 2 HOH 45 147 92 HOH HOH A . C 2 HOH 46 148 95 HOH HOH A . C 2 HOH 47 149 97 HOH HOH A . C 2 HOH 48 150 100 HOH HOH A . C 2 HOH 49 151 102 HOH HOH A . C 2 HOH 50 152 105 HOH HOH A . C 2 HOH 51 153 106 HOH HOH A . C 2 HOH 52 154 109 HOH HOH A . C 2 HOH 53 155 111 HOH HOH A . C 2 HOH 54 156 112 HOH HOH A . C 2 HOH 55 157 113 HOH HOH A . C 2 HOH 56 158 115 HOH HOH A . C 2 HOH 57 159 116 HOH HOH A . C 2 HOH 58 160 125 HOH HOH A . C 2 HOH 59 161 131 HOH HOH A . C 2 HOH 60 162 134 HOH HOH A . C 2 HOH 61 163 135 HOH HOH A . C 2 HOH 62 164 137 HOH HOH A . C 2 HOH 63 165 139 HOH HOH A . C 2 HOH 64 166 142 HOH HOH A . C 2 HOH 65 167 143 HOH HOH A . C 2 HOH 66 168 146 HOH HOH A . C 2 HOH 67 169 159 HOH HOH A . C 2 HOH 68 170 167 HOH HOH A . C 2 HOH 69 171 168 HOH HOH A . C 2 HOH 70 172 169 HOH HOH A . C 2 HOH 71 173 172 HOH HOH A . C 2 HOH 72 174 174 HOH HOH A . C 2 HOH 73 175 175 HOH HOH A . C 2 HOH 74 176 176 HOH HOH A . C 2 HOH 75 177 178 HOH HOH A . C 2 HOH 76 178 180 HOH HOH A . C 2 HOH 77 179 182 HOH HOH A . C 2 HOH 78 180 184 HOH HOH A . C 2 HOH 79 181 186 HOH HOH A . C 2 HOH 80 182 187 HOH HOH A . C 2 HOH 81 183 190 HOH HOH A . C 2 HOH 82 184 191 HOH HOH A . C 2 HOH 83 185 192 HOH HOH A . C 2 HOH 84 186 195 HOH HOH A . C 2 HOH 85 187 196 HOH HOH A . C 2 HOH 86 188 199 HOH HOH A . C 2 HOH 87 189 201 HOH HOH A . C 2 HOH 88 190 204 HOH HOH A . C 2 HOH 89 191 205 HOH HOH A . C 2 HOH 90 192 207 HOH HOH A . C 2 HOH 91 193 208 HOH HOH A . C 2 HOH 92 194 210 HOH HOH A . C 2 HOH 93 195 213 HOH HOH A . C 2 HOH 94 196 215 HOH HOH A . C 2 HOH 95 197 217 HOH HOH A . C 2 HOH 96 198 218 HOH HOH A . C 2 HOH 97 199 219 HOH HOH A . C 2 HOH 98 200 222 HOH HOH A . C 2 HOH 99 201 225 HOH HOH A . C 2 HOH 100 202 229 HOH HOH A . C 2 HOH 101 203 237 HOH HOH A . C 2 HOH 102 204 241 HOH HOH A . C 2 HOH 103 205 250 HOH HOH A . C 2 HOH 104 206 257 HOH HOH A . C 2 HOH 105 207 259 HOH HOH A . C 2 HOH 106 208 260 HOH HOH A . C 2 HOH 107 209 270 HOH HOH A . C 2 HOH 108 210 272 HOH HOH A . C 2 HOH 109 211 273 HOH HOH A . C 2 HOH 110 212 281 HOH HOH A . C 2 HOH 111 213 297 HOH HOH A . C 2 HOH 112 214 303 HOH HOH A . C 2 HOH 113 215 307 HOH HOH A . C 2 HOH 114 216 309 HOH HOH A . C 2 HOH 115 217 317 HOH HOH A . C 2 HOH 116 218 320 HOH HOH A . C 2 HOH 117 219 331 HOH HOH A . C 2 HOH 118 220 334 HOH HOH A . C 2 HOH 119 221 343 HOH HOH A . C 2 HOH 120 222 360 HOH HOH A . C 2 HOH 121 223 362 HOH HOH A . C 2 HOH 122 224 389 HOH HOH A . C 2 HOH 123 225 392 HOH HOH A . D 2 HOH 1 103 1 HOH HOH B . D 2 HOH 2 104 2 HOH HOH B . D 2 HOH 3 105 3 HOH HOH B . D 2 HOH 4 106 5 HOH HOH B . D 2 HOH 5 107 10 HOH HOH B . D 2 HOH 6 108 11 HOH HOH B . D 2 HOH 7 109 12 HOH HOH B . D 2 HOH 8 110 16 HOH HOH B . D 2 HOH 9 111 17 HOH HOH B . D 2 HOH 10 112 19 HOH HOH B . D 2 HOH 11 113 21 HOH HOH B . D 2 HOH 12 114 23 HOH HOH B . D 2 HOH 13 115 25 HOH HOH B . D 2 HOH 14 116 27 HOH HOH B . D 2 HOH 15 117 28 HOH HOH B . D 2 HOH 16 118 30 HOH HOH B . D 2 HOH 17 119 33 HOH HOH B . D 2 HOH 18 120 34 HOH HOH B . D 2 HOH 19 121 35 HOH HOH B . D 2 HOH 20 122 36 HOH HOH B . D 2 HOH 21 123 39 HOH HOH B . D 2 HOH 22 124 40 HOH HOH B . D 2 HOH 23 125 41 HOH HOH B . D 2 HOH 24 126 44 HOH HOH B . D 2 HOH 25 127 47 HOH HOH B . D 2 HOH 26 128 50 HOH HOH B . D 2 HOH 27 129 52 HOH HOH B . D 2 HOH 28 130 58 HOH HOH B . D 2 HOH 29 131 59 HOH HOH B . D 2 HOH 30 132 62 HOH HOH B . D 2 HOH 31 133 63 HOH HOH B . D 2 HOH 32 134 65 HOH HOH B . D 2 HOH 33 135 66 HOH HOH B . D 2 HOH 34 136 67 HOH HOH B . D 2 HOH 35 137 73 HOH HOH B . D 2 HOH 36 138 74 HOH HOH B . D 2 HOH 37 139 78 HOH HOH B . D 2 HOH 38 140 79 HOH HOH B . D 2 HOH 39 141 82 HOH HOH B . D 2 HOH 40 142 85 HOH HOH B . D 2 HOH 41 143 88 HOH HOH B . D 2 HOH 42 144 89 HOH HOH B . D 2 HOH 43 145 90 HOH HOH B . D 2 HOH 44 146 94 HOH HOH B . D 2 HOH 45 147 96 HOH HOH B . D 2 HOH 46 148 98 HOH HOH B . D 2 HOH 47 149 99 HOH HOH B . D 2 HOH 48 150 101 HOH HOH B . D 2 HOH 49 151 103 HOH HOH B . D 2 HOH 50 152 104 HOH HOH B . D 2 HOH 51 153 108 HOH HOH B . D 2 HOH 52 154 118 HOH HOH B . D 2 HOH 53 155 119 HOH HOH B . D 2 HOH 54 156 122 HOH HOH B . D 2 HOH 55 157 124 HOH HOH B . D 2 HOH 56 158 130 HOH HOH B . D 2 HOH 57 159 132 HOH HOH B . D 2 HOH 58 160 136 HOH HOH B . D 2 HOH 59 161 144 HOH HOH B . D 2 HOH 60 162 148 HOH HOH B . D 2 HOH 61 163 149 HOH HOH B . D 2 HOH 62 164 157 HOH HOH B . D 2 HOH 63 165 160 HOH HOH B . D 2 HOH 64 166 161 HOH HOH B . D 2 HOH 65 167 173 HOH HOH B . D 2 HOH 66 168 177 HOH HOH B . D 2 HOH 67 169 179 HOH HOH B . D 2 HOH 68 170 181 HOH HOH B . D 2 HOH 69 171 185 HOH HOH B . D 2 HOH 70 172 188 HOH HOH B . D 2 HOH 71 173 189 HOH HOH B . D 2 HOH 72 174 194 HOH HOH B . D 2 HOH 73 175 197 HOH HOH B . D 2 HOH 74 176 198 HOH HOH B . D 2 HOH 75 177 202 HOH HOH B . D 2 HOH 76 178 203 HOH HOH B . D 2 HOH 77 179 209 HOH HOH B . D 2 HOH 78 180 211 HOH HOH B . D 2 HOH 79 181 214 HOH HOH B . D 2 HOH 80 182 216 HOH HOH B . D 2 HOH 81 183 220 HOH HOH B . D 2 HOH 82 184 224 HOH HOH B . D 2 HOH 83 185 230 HOH HOH B . D 2 HOH 84 186 231 HOH HOH B . D 2 HOH 85 187 232 HOH HOH B . D 2 HOH 86 188 243 HOH HOH B . D 2 HOH 87 189 246 HOH HOH B . D 2 HOH 88 190 248 HOH HOH B . D 2 HOH 89 191 251 HOH HOH B . D 2 HOH 90 192 253 HOH HOH B . D 2 HOH 91 193 266 HOH HOH B . D 2 HOH 92 194 268 HOH HOH B . D 2 HOH 93 195 276 HOH HOH B . D 2 HOH 94 196 280 HOH HOH B . D 2 HOH 95 197 301 HOH HOH B . D 2 HOH 96 198 302 HOH HOH B . D 2 HOH 97 199 306 HOH HOH B . D 2 HOH 98 200 324 HOH HOH B . D 2 HOH 99 201 327 HOH HOH B . D 2 HOH 100 202 329 HOH HOH B . D 2 HOH 101 203 354 HOH HOH B . D 2 HOH 102 204 356 HOH HOH B . D 2 HOH 103 205 366 HOH HOH B . D 2 HOH 104 206 369 HOH HOH B . D 2 HOH 105 207 383 HOH HOH B . D 2 HOH 106 208 385 HOH HOH B . D 2 HOH 107 209 388 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 11 ? CG ? A LYS 11 CG 2 1 Y 1 A LYS 11 ? CD ? A LYS 11 CD 3 1 Y 1 A LYS 11 ? CE ? A LYS 11 CE 4 1 Y 1 A LYS 11 ? NZ ? A LYS 11 NZ 5 1 Y 1 A GLU 45 ? CG ? A GLU 45 CG 6 1 Y 1 A GLU 45 ? CD ? A GLU 45 CD 7 1 Y 1 A GLU 45 ? OE1 ? A GLU 45 OE1 8 1 Y 1 A GLU 45 ? OE2 ? A GLU 45 OE2 9 1 Y 1 A LYS 98 ? CG ? A LYS 98 CG 10 1 Y 1 A LYS 98 ? CD ? A LYS 98 CD 11 1 Y 1 A LYS 98 ? CE ? A LYS 98 CE 12 1 Y 1 A LYS 98 ? NZ ? A LYS 98 NZ 13 1 Y 1 B ARG 15 ? CG ? B ARG 15 CG 14 1 Y 1 B ARG 15 ? CD ? B ARG 15 CD 15 1 Y 1 B ARG 15 ? NE ? B ARG 15 NE 16 1 Y 1 B ARG 15 ? CZ ? B ARG 15 CZ 17 1 Y 1 B ARG 15 ? NH1 ? B ARG 15 NH1 18 1 Y 1 B ARG 15 ? NH2 ? B ARG 15 NH2 19 1 Y 1 B ARG 42 ? CG ? B ARG 42 CG 20 1 Y 1 B ARG 42 ? CD ? B ARG 42 CD 21 1 Y 1 B ARG 42 ? NE ? B ARG 42 NE 22 1 Y 1 B ARG 42 ? CZ ? B ARG 42 CZ 23 1 Y 1 B ARG 42 ? NH1 ? B ARG 42 NH1 24 1 Y 1 B ARG 42 ? NH2 ? B ARG 42 NH2 25 1 Y 1 B LYS 46 ? CG ? B LYS 46 CG 26 1 Y 1 B LYS 46 ? CD ? B LYS 46 CD 27 1 Y 1 B LYS 46 ? CE ? B LYS 46 CE 28 1 Y 1 B LYS 46 ? NZ ? B LYS 46 NZ 29 1 Y 1 B LYS 98 ? CG ? B LYS 98 CG 30 1 Y 1 B LYS 98 ? CD ? B LYS 98 CD 31 1 Y 1 B LYS 98 ? CE ? B LYS 98 CE 32 1 Y 1 B LYS 98 ? NZ ? B LYS 98 NZ 33 1 Y 1 B VAL 99 ? CG1 ? B VAL 99 CG1 34 1 Y 1 B VAL 99 ? CG2 ? B VAL 99 CG2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SnB phasing . ? 3 SOLVE phasing . ? 4 CNS refinement 1.1 ? 5 # _cell.entry_id 1RFY _cell.length_a 78.230 _cell.length_b 85.750 _cell.length_c 67.020 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RFY _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.cell_setting orthorhombic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1RFY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 51.2 _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details 'amonium acetate, sodium citrate, PEG 2000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-01-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9636 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F2' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9636 # _reflns.entry_id 1RFY _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60 _reflns.d_resolution_high 1.60 _reflns.number_obs 29690 _reflns.number_all 30102 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.4 _reflns.B_iso_Wilson_estimate 21.3 _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 84.8 _reflns_shell.Rmerge_I_obs 0.403 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1234 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1RFY _refine.ls_number_reflns_obs 29073 _refine.ls_number_reflns_all 30102 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 293645.01 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 60 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.2021 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.222 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 2895 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.6 _refine.aniso_B[1][1] -2.07 _refine.aniso_B[2][2] 2.15 _refine.aniso_B[3][3] -0.08 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.392037 _refine.solvent_model_param_bsol 52.2428 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1RFY _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.08 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1349 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 230 _refine_hist.number_atoms_total 1579 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.82 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.08 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.63 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.31 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.25 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 3893 _refine_ls_shell.R_factor_R_work 0.218 _refine_ls_shell.percent_reflns_obs 87.9 _refine_ls_shell.R_factor_R_free 0.238 _refine_ls_shell.R_factor_R_free_error 0.011 _refine_ls_shell.percent_reflns_R_free 10.4 _refine_ls_shell.number_reflns_R_free 451 _refine_ls_shell.number_reflns_obs 3893 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1RFY _struct.title 'Crystal Structure of Quorum-Sensing Antiactivator TraM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RFY _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'inter- and intra-molcular two-helix coiled coil; homodimer, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code TRAM_9RHIZ _struct_ref.pdbx_db_accession Q57471 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MELEDANVTKKVELRPLIGLTRGLPPTDLETITIDAIRTHRRLVEKADELFQALPETYKTGQACGGPQHIRYIEASIEMH AQMSALNTLYSILGFIPKVVVN ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1RFY A 1 ? 102 ? Q57471 1 ? 102 ? 1 102 2 1 1RFY B 1 ? 102 ? Q57471 1 ? 102 ? 1 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1RFY ILE A 90 ? UNP Q57471 TYR 90 conflict 90 1 2 1RFY ILE B 90 ? UNP Q57471 TYR 90 conflict 90 2 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA,PQS dimeric 2 2 author_and_software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2120 ? 1 MORE -24 ? 1 'SSA (A^2)' 9630 ? 2 'ABSA (A^2)' 2150 ? 2 MORE -25 ? 2 'SSA (A^2)' 9570 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C 2 1,3 B,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_655 -x+3/2,-y+1/2,z -1.0000000000 0.0000000000 0.0000000000 117.3450000000 0.0000000000 -1.0000000000 0.0000000000 42.8750000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 85.7500000000 0.0000000000 0.0000000000 -1.0000000000 67.0200000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;the second protomer of the biological assembly is generated by the two-fold axis: 2-x, 1-y, z the second protomer of the biological assembly is generated by the two-fold axis: 1.5-x, 0.5-y, z ; ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 15 ? ARG A 22 ? ARG A 15 ARG A 22 1 ? 8 HELX_P HELX_P2 2 PRO A 25 ? ALA A 53 ? PRO A 25 ALA A 53 1 ? 29 HELX_P HELX_P3 3 PRO A 55 ? THR A 60 ? PRO A 55 THR A 60 1 ? 6 HELX_P HELX_P4 4 GLY A 66 ? GLY A 94 ? GLY A 66 GLY A 94 1 ? 29 HELX_P HELX_P5 5 ARG B 15 ? ARG B 22 ? ARG B 15 ARG B 22 1 ? 8 HELX_P HELX_P6 6 PRO B 25 ? ALA B 53 ? PRO B 25 ALA B 53 1 ? 29 HELX_P HELX_P7 7 PRO B 55 ? THR B 60 ? PRO B 55 THR B 60 1 ? 6 HELX_P HELX_P8 8 GLY B 66 ? GLY B 94 ? GLY B 66 GLY B 94 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 22 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 22 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_665 _pdbx_validate_symm_contact.dist 2.16 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 14 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -112.73 _pdbx_validate_torsion.psi 79.04 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 A ASN 7 ? A ASN 7 8 1 Y 1 A VAL 8 ? A VAL 8 9 1 Y 1 A THR 9 ? A THR 9 10 1 Y 1 A VAL 99 ? A VAL 99 11 1 Y 1 A VAL 100 ? A VAL 100 12 1 Y 1 A VAL 101 ? A VAL 101 13 1 Y 1 A ASN 102 ? A ASN 102 14 1 Y 1 B MET 1 ? B MET 1 15 1 Y 1 B GLU 2 ? B GLU 2 16 1 Y 1 B LEU 3 ? B LEU 3 17 1 Y 1 B GLU 4 ? B GLU 4 18 1 Y 1 B ASP 5 ? B ASP 5 19 1 Y 1 B ALA 6 ? B ALA 6 20 1 Y 1 B ASN 7 ? B ASN 7 21 1 Y 1 B VAL 8 ? B VAL 8 22 1 Y 1 B THR 9 ? B THR 9 23 1 Y 1 B LYS 10 ? B LYS 10 24 1 Y 1 B LYS 11 ? B LYS 11 25 1 Y 1 B VAL 100 ? B VAL 100 26 1 Y 1 B VAL 101 ? B VAL 101 27 1 Y 1 B ASN 102 ? B ASN 102 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _atom_sites.entry_id 1RFY _atom_sites.fract_transf_matrix[1][1] 0.012783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011662 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014921 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_