HEADER TRANSFERASE 14-NOV-03 1RHF TITLE CRYSTAL STRUCTURE OF HUMAN TYRO3-D1D2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE RECEPTOR TYRO3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL IG-DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RSE, TYROSINE-PROTEIN KINASE SKY, COMPND 6 TYROSINE-PROTEIN KINASE DTK, PROTEIN-TYROSINE KINASE BYK; COMPND 7 EC: 2.7.1.112; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYRO3, RSE, SKY, DTK, BYK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A+ KEYWDS AXL/TYRO3 FAMILY, CELLULAR ADHESION, LIGAND-INDEPENDENT DIMERIZATION, KEYWDS 2 MUTATIONAL ANALYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HEIRING,B.DAHLBACK,Y.A.MULLER REVDAT 4 11-OCT-17 1RHF 1 REMARK REVDAT 3 13-JUL-11 1RHF 1 VERSN REVDAT 2 24-FEB-09 1RHF 1 VERSN REVDAT 1 23-MAR-04 1RHF 0 JRNL AUTH C.HEIRING,B.DAHLBACK,Y.A.MULLER JRNL TITL LIGAND RECOGNITION AND HOMOPHILIC INTERACTIONS IN TYRO3: JRNL TITL 2 STRUCTURAL INSIGHTS INTO THE AXL/TYRO3 RECEPTOR TYROSINE JRNL TITL 3 KINASE FAMILY. JRNL REF J.BIOL.CHEM. V. 279 6952 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14623883 JRNL DOI 10.1074/JBC.M311750200 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2775 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2599 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 2.07000 REMARK 3 B12 (A**2) : -0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2841 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2525 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3901 ; 1.402 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5937 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.814 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3142 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 411 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2849 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1729 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.188 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 114 ; 0.272 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.311 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1797 ; 1.312 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2935 ; 2.264 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1044 ; 3.053 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 962 ; 4.820 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1RHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CACODYLATE, MAGNESIUM REMARK 280 ACETATE, PEG2000, DTT, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.82333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.64667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.23500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.05833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 10.41167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 MET A 6 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 MET B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 48 OH TYR A 50 2.08 REMARK 500 O HOH A 351 O HOH A 373 2.11 REMARK 500 O HOH A 346 O HOH A 399 2.12 REMARK 500 OE2 GLU A 68 O HOH A 386 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 392 O HOH B 418 6555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 31.91 71.10 REMARK 500 SER A 66 97.48 -168.27 REMARK 500 ASP A 81 -80.92 71.58 REMARK 500 SER A 88 149.55 -39.69 REMARK 500 ILE A 140 -82.83 -99.81 REMARK 500 SER B 66 82.76 36.60 REMARK 500 ILE B 140 -90.24 -100.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 EPE B 306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACT A 302 OXT REMARK 620 2 HIS A 166 NE2 107.9 REMARK 620 3 HIS B 166 NE2 90.4 102.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 306 DBREF 1RHF A 1 182 UNP Q06418 TYRO3_HUMAN 41 222 DBREF 1RHF B 1 182 UNP Q06418 TYRO3_HUMAN 41 222 SEQADV 1RHF MSE A 29 UNP Q06418 MET 69 MODIFIED RESIDUE SEQADV 1RHF MSE A 160 UNP Q06418 MET 200 MODIFIED RESIDUE SEQADV 1RHF MSE B 29 UNP Q06418 MET 69 MODIFIED RESIDUE SEQADV 1RHF MSE B 160 UNP Q06418 MET 200 MODIFIED RESIDUE SEQRES 1 A 182 ALA GLY LEU LYS LEU MET GLY ALA PRO VAL LYS LEU THR SEQRES 2 A 182 VAL SER GLN GLY GLN PRO VAL LYS LEU ASN CYS SER VAL SEQRES 3 A 182 GLU GLY MSE GLU GLU PRO ASP ILE GLN TRP VAL LYS ASP SEQRES 4 A 182 GLY ALA VAL VAL GLN ASN LEU ASP GLN LEU TYR ILE PRO SEQRES 5 A 182 VAL SER GLU GLN HIS TRP ILE GLY PHE LEU SER LEU LYS SEQRES 6 A 182 SER VAL GLU ARG SER ASP ALA GLY ARG TYR TRP CYS GLN SEQRES 7 A 182 VAL GLU ASP GLY GLY GLU THR GLU ILE SER GLN PRO VAL SEQRES 8 A 182 TRP LEU THR VAL GLU GLY VAL PRO PHE PHE THR VAL GLU SEQRES 9 A 182 PRO LYS ASP LEU ALA VAL PRO PRO ASN ALA PRO PHE GLN SEQRES 10 A 182 LEU SER CYS GLU ALA VAL GLY PRO PRO GLU PRO VAL THR SEQRES 11 A 182 ILE VAL TRP TRP ARG GLY THR THR LYS ILE GLY GLY PRO SEQRES 12 A 182 ALA PRO SER PRO SER VAL LEU ASN VAL THR GLY VAL THR SEQRES 13 A 182 GLN SER THR MSE PHE SER CYS GLU ALA HIS ASN LEU LYS SEQRES 14 A 182 GLY LEU ALA SER SER ARG THR ALA THR VAL HIS LEU GLN SEQRES 1 B 182 ALA GLY LEU LYS LEU MET GLY ALA PRO VAL LYS LEU THR SEQRES 2 B 182 VAL SER GLN GLY GLN PRO VAL LYS LEU ASN CYS SER VAL SEQRES 3 B 182 GLU GLY MSE GLU GLU PRO ASP ILE GLN TRP VAL LYS ASP SEQRES 4 B 182 GLY ALA VAL VAL GLN ASN LEU ASP GLN LEU TYR ILE PRO SEQRES 5 B 182 VAL SER GLU GLN HIS TRP ILE GLY PHE LEU SER LEU LYS SEQRES 6 B 182 SER VAL GLU ARG SER ASP ALA GLY ARG TYR TRP CYS GLN SEQRES 7 B 182 VAL GLU ASP GLY GLY GLU THR GLU ILE SER GLN PRO VAL SEQRES 8 B 182 TRP LEU THR VAL GLU GLY VAL PRO PHE PHE THR VAL GLU SEQRES 9 B 182 PRO LYS ASP LEU ALA VAL PRO PRO ASN ALA PRO PHE GLN SEQRES 10 B 182 LEU SER CYS GLU ALA VAL GLY PRO PRO GLU PRO VAL THR SEQRES 11 B 182 ILE VAL TRP TRP ARG GLY THR THR LYS ILE GLY GLY PRO SEQRES 12 B 182 ALA PRO SER PRO SER VAL LEU ASN VAL THR GLY VAL THR SEQRES 13 B 182 GLN SER THR MSE PHE SER CYS GLU ALA HIS ASN LEU LYS SEQRES 14 B 182 GLY LEU ALA SER SER ARG THR ALA THR VAL HIS LEU GLN MODRES 1RHF MSE A 29 MET SELENOMETHIONINE MODRES 1RHF MSE A 160 MET SELENOMETHIONINE MODRES 1RHF MSE B 29 MET SELENOMETHIONINE MODRES 1RHF MSE B 160 MET SELENOMETHIONINE HET MSE A 29 8 HET MSE A 160 8 HET MSE B 29 8 HET MSE B 160 8 HET ZN A 301 1 HET ACT A 302 4 HET ACT A 303 4 HET ACT A 305 4 HET ACT B 304 4 HET EPE B 306 15 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ZN ZN 2+ FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 9 HOH *275(H2 O) HELIX 1 1 GLU A 68 ALA A 72 5 5 HELIX 2 2 GLU B 68 ALA B 72 5 5 SHEET 1 A 5 VAL A 10 SER A 15 0 SHEET 2 A 5 VAL A 91 GLU A 96 1 O TRP A 92 N VAL A 10 SHEET 3 A 5 GLY A 73 VAL A 79 -1 N TYR A 75 O VAL A 91 SHEET 4 A 5 ILE A 34 LYS A 38 -1 N VAL A 37 O TRP A 76 SHEET 5 A 5 ALA A 41 VAL A 42 -1 O ALA A 41 N LYS A 38 SHEET 1 B 4 ASP A 47 SER A 54 0 SHEET 2 B 4 HIS A 57 LEU A 64 -1 O ILE A 59 N ILE A 51 SHEET 3 B 4 VAL A 20 GLU A 27 -1 N VAL A 26 O TRP A 58 SHEET 4 B 4 GLU A 86 ILE A 87 -1 O GLU A 86 N GLU A 27 SHEET 1 C 3 PHE A 100 VAL A 103 0 SHEET 2 C 3 PHE A 116 VAL A 123 -1 O VAL A 123 N PHE A 100 SHEET 3 C 3 SER A 148 VAL A 152 -1 O LEU A 150 N LEU A 118 SHEET 1 D 5 LEU A 108 VAL A 110 0 SHEET 2 D 5 ALA A 177 LEU A 181 1 O HIS A 180 N LEU A 108 SHEET 3 D 5 THR A 159 ASN A 167 -1 N THR A 159 O VAL A 179 SHEET 4 D 5 THR A 130 ARG A 135 -1 N TRP A 134 O SER A 162 SHEET 5 D 5 ALA A 144 PRO A 145 -1 O ALA A 144 N ILE A 131 SHEET 1 E 4 THR A 138 LYS A 139 0 SHEET 2 E 4 THR A 130 ARG A 135 -1 N ARG A 135 O THR A 138 SHEET 3 E 4 THR A 159 ASN A 167 -1 O SER A 162 N TRP A 134 SHEET 4 E 4 GLY A 170 SER A 173 -1 O ALA A 172 N ALA A 165 SHEET 1 F 5 VAL B 10 SER B 15 0 SHEET 2 F 5 VAL B 91 GLU B 96 1 O THR B 94 N LEU B 12 SHEET 3 F 5 GLY B 73 VAL B 79 -1 N TYR B 75 O VAL B 91 SHEET 4 F 5 ILE B 34 LYS B 38 -1 N VAL B 37 O TRP B 76 SHEET 5 F 5 ALA B 41 VAL B 42 -1 O ALA B 41 N LYS B 38 SHEET 1 G 4 GLN B 48 SER B 54 0 SHEET 2 G 4 HIS B 57 LEU B 64 -1 O ILE B 59 N ILE B 51 SHEET 3 G 4 VAL B 20 GLU B 27 -1 N VAL B 26 O TRP B 58 SHEET 4 G 4 GLU B 86 ILE B 87 -1 O GLU B 86 N GLU B 27 SHEET 1 H 3 PHE B 100 VAL B 103 0 SHEET 2 H 3 PHE B 116 VAL B 123 -1 O GLU B 121 N VAL B 103 SHEET 3 H 3 SER B 148 VAL B 152 -1 O VAL B 152 N PHE B 116 SHEET 1 I 5 LEU B 108 VAL B 110 0 SHEET 2 I 5 ALA B 177 LEU B 181 1 O HIS B 180 N VAL B 110 SHEET 3 I 5 THR B 159 ASN B 167 -1 N PHE B 161 O ALA B 177 SHEET 4 I 5 THR B 130 ARG B 135 -1 N TRP B 134 O SER B 162 SHEET 5 I 5 ALA B 144 PRO B 145 -1 O ALA B 144 N ILE B 131 SHEET 1 J 4 THR B 138 LYS B 139 0 SHEET 2 J 4 THR B 130 ARG B 135 -1 N ARG B 135 O THR B 138 SHEET 3 J 4 THR B 159 ASN B 167 -1 O SER B 162 N TRP B 134 SHEET 4 J 4 GLY B 170 SER B 173 -1 O ALA B 172 N ALA B 165 SSBOND 1 CYS A 24 CYS A 77 1555 1555 2.05 SSBOND 2 CYS A 120 CYS A 163 1555 1555 2.05 SSBOND 3 CYS B 24 CYS B 77 1555 1555 2.05 SSBOND 4 CYS B 120 CYS B 163 1555 1555 2.08 LINK C GLY A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N GLU A 30 1555 1555 1.33 LINK C THR A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N PHE A 161 1555 1555 1.33 LINK ZN ZN A 301 OXT ACT A 302 1555 1555 1.83 LINK ZN ZN A 301 NE2 HIS A 166 1555 1555 2.09 LINK ZN ZN A 301 NE2 HIS B 166 1555 1555 2.09 LINK C GLY B 28 N MSE B 29 1555 1555 1.33 LINK C MSE B 29 N GLU B 30 1555 1555 1.33 LINK C THR B 159 N MSE B 160 1555 1555 1.34 LINK C MSE B 160 N PHE B 161 1555 1555 1.33 CISPEP 1 GLY A 124 PRO A 125 0 5.17 CISPEP 2 PRO A 125 PRO A 126 0 -0.55 CISPEP 3 GLU A 127 PRO A 128 0 1.49 CISPEP 4 GLY A 142 PRO A 143 0 3.69 CISPEP 5 SER A 146 PRO A 147 0 -2.10 CISPEP 6 GLY B 124 PRO B 125 0 4.44 CISPEP 7 PRO B 125 PRO B 126 0 -0.69 CISPEP 8 GLU B 127 PRO B 128 0 6.80 CISPEP 9 GLY B 142 PRO B 143 0 -8.72 CISPEP 10 SER B 146 PRO B 147 0 -2.95 SITE 1 AC1 4 HIS A 166 ACT A 302 HOH A 423 HIS B 166 SITE 1 AC2 6 HIS A 166 ASN A 167 LEU A 168 ZN A 301 SITE 2 AC2 6 HOH A 363 HIS B 166 SITE 1 AC3 2 ARG A 74 THR A 176 SITE 1 AC4 5 ARG B 74 TRP B 76 THR B 176 EPE B 306 SITE 2 AC4 5 HOH B 342 SITE 1 AC5 8 ASP A 107 LEU A 108 HIS A 180 ASP B 107 SITE 2 AC5 8 LEU B 108 ALA B 109 HIS B 180 HOH B 419 SITE 1 AC6 5 TRP B 76 ILE B 87 SER B 88 ACT B 304 SITE 2 AC6 5 HOH B 388 CRYST1 109.550 109.550 62.470 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009128 0.005270 0.000000 0.00000 SCALE2 0.000000 0.010540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016008 0.00000