HEADER RNA 03-MAR-95 1RHT TITLE 24-MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR BACTERIOPHAGE R17 TITLE 2 (NMR, MINIMIZED AVERAGE STRUCTURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(P*GP*GP*GP*AP*CP*UP*GP*AP*CP*GP*AP*UP*CP*AP*CP*GP*CP*AP*GP*UP*CP*UP COMPND 4 *AP*U)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS RNA, HAIRPIN, BACTERIOPHAGE R17 EXPDTA SOLUTION NMR AUTHOR P.N.BORER,Y.LIN,S.WANG,M.W.ROGGENBUCK,J.M.GOTT,O.C.UHLENBECK, AUTHOR 2 I.PELCZER REVDAT 4 22-MAY-24 1RHT 1 REMARK REVDAT 3 02-MAR-22 1RHT 1 REMARK REVDAT 2 24-FEB-09 1RHT 1 VERSN REVDAT 1 03-JUN-95 1RHT 0 JRNL AUTH P.N.BORER,Y.LIN,S.WANG,M.W.ROGGENBUCK,J.M.GOTT, JRNL AUTH 2 O.C.UHLENBECK,I.PELCZER JRNL TITL PROTON NMR AND STRUCTURAL FEATURES OF A 24-NUCLEOTIDE RNA JRNL TITL 2 HAIRPIN. JRNL REF BIOCHEMISTRY V. 34 6488 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7756280 JRNL DOI 10.1021/BI00019A030 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SYBYL MOLECULAR DYNAMICS REMARK 3 AUTHORS : TRIPOS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176093. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 7 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGE STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 N3 G A 1 C4 0.090 REMARK 500 G A 1 C4 G A 1 C5 -0.059 REMARK 500 G A 1 C5 G A 1 N7 0.048 REMARK 500 G A 1 N7 G A 1 C8 -0.049 REMARK 500 G A 1 C8 G A 1 N9 -0.075 REMARK 500 G A 1 N9 G A 1 C4 -0.057 REMARK 500 G A 2 C2 G A 2 N3 -0.048 REMARK 500 G A 2 N3 G A 2 C4 0.087 REMARK 500 G A 2 C4 G A 2 C5 -0.051 REMARK 500 G A 2 C5 G A 2 N7 0.047 REMARK 500 G A 2 N7 G A 2 C8 -0.044 REMARK 500 G A 2 C8 G A 2 N9 -0.069 REMARK 500 G A 2 N9 G A 2 C4 -0.068 REMARK 500 G A 3 N3 G A 3 C4 0.088 REMARK 500 G A 3 C4 G A 3 C5 -0.048 REMARK 500 G A 3 C5 G A 3 N7 0.044 REMARK 500 G A 3 N7 G A 3 C8 -0.046 REMARK 500 G A 3 C8 G A 3 N9 -0.071 REMARK 500 G A 3 N9 G A 3 C4 -0.063 REMARK 500 A A 4 C5 A A 4 N7 -0.051 REMARK 500 A A 4 N7 A A 4 C8 -0.044 REMARK 500 A A 4 C8 A A 4 N9 -0.063 REMARK 500 C A 5 C2 C A 5 N3 0.090 REMARK 500 C A 5 N3 C A 5 C4 -0.064 REMARK 500 C A 5 C4 C A 5 C5 0.056 REMARK 500 G A 7 N3 G A 7 C4 0.091 REMARK 500 G A 7 C4 G A 7 C5 -0.048 REMARK 500 G A 7 C5 G A 7 N7 0.049 REMARK 500 G A 7 N7 G A 7 C8 -0.043 REMARK 500 G A 7 C8 G A 7 N9 -0.070 REMARK 500 G A 7 N9 G A 7 C4 -0.063 REMARK 500 A A 8 C5 A A 8 N7 -0.052 REMARK 500 A A 8 N7 A A 8 C8 -0.046 REMARK 500 A A 8 C8 A A 8 N9 -0.065 REMARK 500 C A 9 C2 C A 9 N3 0.091 REMARK 500 C A 9 N3 C A 9 C4 -0.064 REMARK 500 C A 9 C4 C A 9 C5 0.056 REMARK 500 G A 10 N3 G A 10 C4 0.089 REMARK 500 G A 10 C4 G A 10 C5 -0.047 REMARK 500 G A 10 C5 G A 10 N7 0.043 REMARK 500 G A 10 N7 G A 10 C8 -0.049 REMARK 500 G A 10 C8 G A 10 N9 -0.070 REMARK 500 G A 10 N9 G A 10 C4 -0.064 REMARK 500 A A 11 C5 A A 11 N7 -0.059 REMARK 500 A A 11 N7 A A 11 C8 -0.050 REMARK 500 A A 11 C8 A A 11 N9 -0.068 REMARK 500 C A 13 C2 C A 13 N3 0.090 REMARK 500 C A 13 N3 C A 13 C4 -0.063 REMARK 500 C A 13 C4 C A 13 C5 0.055 REMARK 500 A A 14 C5 A A 14 N7 -0.048 REMARK 500 REMARK 500 THIS ENTRY HAS 79 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 OP1 - P - OP2 ANGL. DEV. = -12.7 DEGREES REMARK 500 G A 1 C3' - C2' - C1' ANGL. DEV. = 5.3 DEGREES REMARK 500 G A 1 C2 - N3 - C4 ANGL. DEV. = 8.4 DEGREES REMARK 500 G A 1 N3 - C4 - C5 ANGL. DEV. = -10.6 DEGREES REMARK 500 G A 1 C4 - C5 - C6 ANGL. DEV. = 3.8 DEGREES REMARK 500 G A 1 C4 - C5 - N7 ANGL. DEV. = -10.0 DEGREES REMARK 500 G A 1 C5 - N7 - C8 ANGL. DEV. = 4.8 DEGREES REMARK 500 G A 1 N9 - C4 - C5 ANGL. DEV. = 7.1 DEGREES REMARK 500 G A 1 C6 - C5 - N7 ANGL. DEV. = 6.2 DEGREES REMARK 500 G A 1 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 1 C5 - C6 - O6 ANGL. DEV. = -7.0 DEGREES REMARK 500 G A 2 OP1 - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 G A 2 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 G A 2 C2 - N3 - C4 ANGL. DEV. = 8.9 DEGREES REMARK 500 G A 2 N3 - C4 - C5 ANGL. DEV. = -9.2 DEGREES REMARK 500 G A 2 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 G A 2 C4 - C5 - N7 ANGL. DEV. = -9.6 DEGREES REMARK 500 G A 2 C5 - N7 - C8 ANGL. DEV. = 4.8 DEGREES REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = -3.1 DEGREES REMARK 500 G A 2 N9 - C4 - C5 ANGL. DEV. = 6.5 DEGREES REMARK 500 G A 2 C6 - C5 - N7 ANGL. DEV. = 8.2 DEGREES REMARK 500 G A 2 N1 - C6 - O6 ANGL. DEV. = 4.8 DEGREES REMARK 500 G A 2 C5 - C6 - O6 ANGL. DEV. = -8.8 DEGREES REMARK 500 G A 2 C3' - O3' - P ANGL. DEV. = 17.1 DEGREES REMARK 500 G A 3 OP1 - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 G A 3 P - O5' - C5' ANGL. DEV. = 11.7 DEGREES REMARK 500 G A 3 C5' - C4' - O4' ANGL. DEV. = 6.8 DEGREES REMARK 500 G A 3 C2 - N3 - C4 ANGL. DEV. = 8.7 DEGREES REMARK 500 G A 3 N3 - C4 - C5 ANGL. DEV. = -9.9 DEGREES REMARK 500 G A 3 C4 - C5 - N7 ANGL. DEV. = -9.4 DEGREES REMARK 500 G A 3 C5 - N7 - C8 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 3 N9 - C4 - C5 ANGL. DEV. = 6.3 DEGREES REMARK 500 G A 3 C6 - C5 - N7 ANGL. DEV. = 6.8 DEGREES REMARK 500 G A 3 N1 - C6 - O6 ANGL. DEV. = 5.1 DEGREES REMARK 500 G A 3 C5 - C6 - O6 ANGL. DEV. = -7.8 DEGREES REMARK 500 A A 4 OP1 - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 A A 4 N1 - C2 - N3 ANGL. DEV. = -7.1 DEGREES REMARK 500 A A 4 C2 - N3 - C4 ANGL. DEV. = 7.6 DEGREES REMARK 500 A A 4 N3 - C4 - C5 ANGL. DEV. = -7.6 DEGREES REMARK 500 A A 4 C4 - C5 - C6 ANGL. DEV. = 5.8 DEGREES REMARK 500 A A 4 C4 - C5 - N7 ANGL. DEV. = -5.3 DEGREES REMARK 500 A A 4 C5 - N7 - C8 ANGL. DEV. = 5.8 DEGREES REMARK 500 A A 4 N3 - C4 - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 A A 4 N1 - C6 - N6 ANGL. DEV. = 4.4 DEGREES REMARK 500 A A 4 C3' - O3' - P ANGL. DEV. = 13.8 DEGREES REMARK 500 C A 5 O5' - C5' - C4' ANGL. DEV. = -6.9 DEGREES REMARK 500 C A 5 P - O5' - C5' ANGL. DEV. = 17.5 DEGREES REMARK 500 C A 5 O4' - C1' - N1 ANGL. DEV. = 7.8 DEGREES REMARK 500 C A 5 N3 - C4 - C5 ANGL. DEV. = -5.6 DEGREES REMARK 500 C A 5 C4 - C5 - C6 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 210 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 A A 4 0.07 SIDE CHAIN REMARK 500 A A 8 0.10 SIDE CHAIN REMARK 500 A A 11 0.14 SIDE CHAIN REMARK 500 C A 13 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1RHT A 1 24 PDB 1RHT 1RHT 1 24 SEQRES 1 A 24 G G G A C U G A C G A U C SEQRES 2 A 24 A C G C A G U C U A U CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000