HEADER LYASE 14-NOV-03 1RHY TITLE CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL PHOSPHATE DEHYDRATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMIDAZOLE GLYCEROL PHOSPHATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IGPD; COMPND 5 EC: 4.2.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FILOBASIDIELLA NEOFORMANS; SOURCE 3 ORGANISM_TAXID: 5207; SOURCE 4 GENE: HIS3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS DEHYDRATASES; HISTIDINE BIOSYNTHESIS; LEFT-HANDED B-A-B CROSSOVER KEYWDS 2 MOTIF; GENE DUPLICATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.SINHA,B.N.CHAUDHURI,J.W.BURGNER,G.YAKOVLEVA,V.J.DAVISSON, AUTHOR 2 J.L.SMITH REVDAT 6 14-FEB-24 1RHY 1 REMARK LINK REVDAT 5 11-OCT-17 1RHY 1 REMARK REVDAT 4 16-NOV-11 1RHY 1 HETATM REVDAT 3 13-JUL-11 1RHY 1 VERSN REVDAT 2 24-FEB-09 1RHY 1 VERSN REVDAT 1 04-MAY-04 1RHY 0 JRNL AUTH S.C.SINHA,B.N.CHAUDHURI,J.W.BURGNER,G.YAKOVLEVA, JRNL AUTH 2 V.J.DAVISSON,J.L.SMITH JRNL TITL CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL-PHOSPHATE JRNL TITL 2 DEHYDRATASE: DUPLICATION OF AN UNUSUAL FOLD JRNL REF J.BIOL.CHEM. V. 279 15491 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14724278 JRNL DOI 10.1074/JBC.M312733200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2905924.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 17078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 878 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2637 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.430 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.150 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.990 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.110 ; 5.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 75.34 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ACYGOL.PAR REMARK 3 PARAMETER FILE 4 : HGLIGS.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ACYGOL.TOP REMARK 3 TOPOLOGY FILE 4 : HGLIGS.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0086, 1.0078, 0.9150 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE,, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.63750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.63750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.63750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.63750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.63750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.63750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.63750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.63750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.63750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.63750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.63750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.63750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.63750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.63750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.63750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.63750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.63750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.63750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER WHICH CAN BE GENERATED REMARK 300 FROM EITHER SUBUNIT IN THE ASYMMETRIC UNIT BY THE CRYSTALLOGRAPHIC REMARK 300 THREE-FOLD AXIS, DESCRIBED BY THE OPERATORS X,Y,Z; Y,Z,X AND Z,X,Y. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 52.63750 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 52.63750 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -52.63750 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 52.63750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5588 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9559 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9588 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9608 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9610 LIES ON A SPECIAL POSITION. REMARK 375 HOH B9630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 67 REMARK 465 ILE A 68 REMARK 465 ASP A 69 REMARK 465 ASP A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 THR A 188 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 ASP A 191 REMARK 465 ASP A 192 REMARK 465 VAL A 193 REMARK 465 PRO A 194 REMARK 465 SER A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 VAL A 199 REMARK 465 LEU A 200 REMARK 465 ALA A 201 REMARK 465 LEU A 202 REMARK 465 MET B 1 REMARK 465 LEU B 66 REMARK 465 HIS B 67 REMARK 465 ILE B 68 REMARK 465 ASP B 69 REMARK 465 ASP B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 GLY B 189 REMARK 465 GLY B 190 REMARK 465 ASP B 191 REMARK 465 ASP B 192 REMARK 465 VAL B 193 REMARK 465 PRO B 194 REMARK 465 SER B 195 REMARK 465 THR B 196 REMARK 465 LYS B 197 REMARK 465 GLY B 198 REMARK 465 VAL B 199 REMARK 465 LEU B 200 REMARK 465 ALA B 201 REMARK 465 LEU B 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 27 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU B 144 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 29 -77.91 -45.28 REMARK 500 ARG A 97 -52.61 69.68 REMARK 500 ASP A 106 -115.46 47.17 REMARK 500 SER A 117 -146.21 -119.83 REMARK 500 ARG A 130 -167.08 -114.48 REMARK 500 GLU B 14 75.73 -105.87 REMARK 500 THR B 15 94.85 -35.41 REMARK 500 ARG B 97 -48.33 70.46 REMARK 500 ASP B 106 -116.48 49.91 REMARK 500 SER B 117 -140.23 -114.05 REMARK 500 TYR B 121 147.70 -177.88 REMARK 500 ARG B 130 -169.49 -101.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A5503 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 38 O REMARK 620 2 CYS A 62 O 84.8 REMARK 620 3 CYS A 62 SG 104.6 82.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC A5502 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 77 SG REMARK 620 2 EMC A5502 C1 158.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC A5501 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 EMC A5501 C1 173.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B9503 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 38 O REMARK 620 2 CYS B 62 SG 97.8 REMARK 620 3 CYS B 62 O 90.5 78.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC B9502 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 77 SG REMARK 620 2 EMC B9502 C1 175.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC B9501 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 124 SG REMARK 620 2 EMC B9501 C1 172.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 5503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 9503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC A 5501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC A 5502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC B 9501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC B 9502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 327 DBREF 1RHY A 1 202 UNP P40919 HIS7_CRYNE 1 202 DBREF 1RHY B 1 202 UNP P40919 HIS7_CRYNE 1 202 SEQRES 1 A 202 MET SER GLU ARG ILE ALA SER VAL GLU ARG THR THR SER SEQRES 2 A 202 GLU THR HIS ILE SER CYS THR ILE ASP LEU ASP HIS ILE SEQRES 3 A 202 PRO GLY VAL THR GLU GLN LYS ILE ASN VAL SER THR GLY SEQRES 4 A 202 ILE GLY PHE LEU ASP HIS MET PHE THR ALA LEU ALA LYS SEQRES 5 A 202 HIS GLY GLY MET SER LEU GLN LEU GLN CYS LYS GLY ASP SEQRES 6 A 202 LEU HIS ILE ASP ASP HIS HIS THR ALA GLU ASP CYS ALA SEQRES 7 A 202 LEU ALA LEU GLY GLU ALA PHE LYS LYS ALA LEU GLY GLU SEQRES 8 A 202 ARG LYS GLY ILE LYS ARG TYR GLY TYR ALA TYR ALA PRO SEQRES 9 A 202 LEU ASP GLU SER LEU SER ARG ALA VAL ILE ASP ILE SER SEQRES 10 A 202 SER ARG PRO TYR PHE MET CYS HIS LEU PRO PHE THR ARG SEQRES 11 A 202 GLU LYS VAL GLY ASP LEU SER THR GLU MET VAL SER HIS SEQRES 12 A 202 LEU LEU GLN SER PHE ALA PHE ALA ALA GLY VAL THR LEU SEQRES 13 A 202 HIS ILE ASP SER ILE ARG GLY GLU ASN ASN HIS HIS ILE SEQRES 14 A 202 ALA GLU SER ALA PHE LYS ALA LEU ALA LEU ALA ILE ARG SEQRES 15 A 202 MET ALA ILE SER ARG THR GLY GLY ASP ASP VAL PRO SER SEQRES 16 A 202 THR LYS GLY VAL LEU ALA LEU SEQRES 1 B 202 MET SER GLU ARG ILE ALA SER VAL GLU ARG THR THR SER SEQRES 2 B 202 GLU THR HIS ILE SER CYS THR ILE ASP LEU ASP HIS ILE SEQRES 3 B 202 PRO GLY VAL THR GLU GLN LYS ILE ASN VAL SER THR GLY SEQRES 4 B 202 ILE GLY PHE LEU ASP HIS MET PHE THR ALA LEU ALA LYS SEQRES 5 B 202 HIS GLY GLY MET SER LEU GLN LEU GLN CYS LYS GLY ASP SEQRES 6 B 202 LEU HIS ILE ASP ASP HIS HIS THR ALA GLU ASP CYS ALA SEQRES 7 B 202 LEU ALA LEU GLY GLU ALA PHE LYS LYS ALA LEU GLY GLU SEQRES 8 B 202 ARG LYS GLY ILE LYS ARG TYR GLY TYR ALA TYR ALA PRO SEQRES 9 B 202 LEU ASP GLU SER LEU SER ARG ALA VAL ILE ASP ILE SER SEQRES 10 B 202 SER ARG PRO TYR PHE MET CYS HIS LEU PRO PHE THR ARG SEQRES 11 B 202 GLU LYS VAL GLY ASP LEU SER THR GLU MET VAL SER HIS SEQRES 12 B 202 LEU LEU GLN SER PHE ALA PHE ALA ALA GLY VAL THR LEU SEQRES 13 B 202 HIS ILE ASP SER ILE ARG GLY GLU ASN ASN HIS HIS ILE SEQRES 14 B 202 ALA GLU SER ALA PHE LYS ALA LEU ALA LEU ALA ILE ARG SEQRES 15 B 202 MET ALA ILE SER ARG THR GLY GLY ASP ASP VAL PRO SER SEQRES 16 B 202 THR LYS GLY VAL LEU ALA LEU HET HG A5503 1 HET EMC A5501 3 HET EMC A5502 3 HET SO4 A 301 5 HET SO4 A 304 5 HET SO4 A 305 5 HET GOL A 326 6 HET HG B9503 1 HET EMC B9501 3 HET EMC B9502 3 HET SO4 B 302 5 HET SO4 B 303 5 HET ACY B 311 4 HET ACY B 312 4 HET ACY B 313 4 HET ACY B 314 4 HET ACY B 315 4 HET ACY B 316 4 HET ACY B 317 4 HET GOL B 321 6 HET GOL B 322 6 HET GOL B 323 6 HET GOL B 324 6 HET GOL B 325 6 HET GOL B 327 6 HETNAM HG MERCURY (II) ION HETNAM EMC ETHYL MERCURY ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HG 2(HG 2+) FORMUL 4 EMC 4(C2 H5 HG 1+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 9 GOL 7(C3 H8 O3) FORMUL 15 ACY 7(C2 H4 O2) FORMUL 28 HOH *247(H2 O) HELIX 1 1 ILE A 40 GLY A 54 1 15 HELIX 2 2 ALA A 74 GLY A 90 1 17 HELIX 3 3 THR A 138 GLY A 153 1 16 HELIX 4 4 ASN A 165 SER A 186 1 22 HELIX 5 5 THR B 12 THR B 15 5 4 HELIX 6 6 ILE B 40 GLY B 55 1 16 HELIX 7 7 ALA B 74 GLY B 90 1 17 HELIX 8 8 THR B 138 GLY B 153 1 16 HELIX 9 9 ASN B 165 SER B 186 1 22 SHEET 1 A 8 ILE A 34 SER A 37 0 SHEET 2 A 8 SER A 57 LYS A 63 1 O LEU A 60 N SER A 37 SHEET 3 A 8 HIS A 16 ASP A 22 -1 N THR A 20 O GLN A 59 SHEET 4 A 8 ILE A 5 THR A 11 -1 N ARG A 10 O ILE A 17 SHEET 5 A 8 ILE B 5 ARG B 10 -1 O GLU B 9 N THR A 11 SHEET 6 A 8 ILE B 17 ASP B 22 -1 O CYS B 19 N VAL B 8 SHEET 7 A 8 SER B 57 CYS B 62 -1 O GLN B 59 N THR B 20 SHEET 8 A 8 ILE B 34 SER B 37 1 N SER B 37 O CYS B 62 SHEET 1 B 4 TYR A 98 LEU A 105 0 SHEET 2 B 4 SER A 108 ASP A 115 -1 O ILE A 114 N GLY A 99 SHEET 3 B 4 THR A 155 ARG A 162 -1 O ILE A 161 N LEU A 109 SHEET 4 B 4 TYR A 121 HIS A 125 1 N HIS A 125 O SER A 160 SHEET 1 C 2 LYS A 132 VAL A 133 0 SHEET 2 C 2 LEU A 136 SER A 137 -1 O LEU A 136 N VAL A 133 SHEET 1 D 4 TYR B 98 LEU B 105 0 SHEET 2 D 4 SER B 108 ASP B 115 -1 O SER B 108 N LEU B 105 SHEET 3 D 4 THR B 155 ARG B 162 -1 O ILE B 161 N LEU B 109 SHEET 4 D 4 TYR B 121 HIS B 125 1 N TYR B 121 O LEU B 156 SHEET 1 E 2 LYS B 132 VAL B 133 0 SHEET 2 E 2 LEU B 136 SER B 137 -1 O LEU B 136 N VAL B 133 LINK O THR A 38 HG HG A5503 1555 1555 3.05 LINK O CYS A 62 HG HG A5503 1555 1555 2.90 LINK SG CYS A 62 HG HG A5503 1555 1555 2.38 LINK SG CYS A 77 HG EMC A5502 1555 1555 2.39 LINK SG CYS A 124 HG EMC A5501 1555 1555 2.40 LINK O THR B 38 HG HG B9503 1555 1555 3.12 LINK SG CYS B 62 HG HG B9503 1555 1555 2.37 LINK O CYS B 62 HG HG B9503 1555 1555 3.15 LINK SG CYS B 77 HG EMC B9502 1555 1555 2.40 LINK SG CYS B 124 HG EMC B9501 1555 1555 2.39 SITE 1 AC1 2 THR A 38 CYS A 62 SITE 1 AC2 2 THR B 38 CYS B 62 SITE 1 AC3 2 PHE A 122 CYS A 124 SITE 1 AC4 4 THR A 38 CYS A 62 CYS A 77 HOH A5589 SITE 1 AC5 3 PHE B 122 CYS B 124 SER B 142 SITE 1 AC6 4 THR B 38 CYS B 62 THR B 73 CYS B 77 SITE 1 AC7 6 LYS A 52 HIS A 53 ARG A 97 LYS A 175 SITE 2 AC7 6 HOH A5504 HOH A5585 SITE 1 AC8 5 HIS B 53 ARG B 97 LYS B 175 HOH B9504 SITE 2 AC8 5 HOH B9593 SITE 1 AC9 5 GLU A 164 HOH A5576 ASN B 165 ASN B 166 SITE 2 AC9 5 HIS B 167 SITE 1 BC1 4 ASN A 165 ASN A 166 HIS A 167 HOH A5560 SITE 1 BC2 3 ASN A 35 VAL A 36 GLN A 61 SITE 1 BC3 3 GLU A 139 HIS A 143 ARG B 119 SITE 1 BC4 3 HIS B 16 HOH B9616 HOH B9623 SITE 1 BC5 3 LYS B 93 GLY B 94 HOH B9581 SITE 1 BC6 4 ARG B 162 GOL B 325 HOH B9541 HOH B9591 SITE 1 BC7 5 SER B 7 SER B 18 THR B 20 HOH B9554 SITE 2 BC7 5 HOH B9590 SITE 1 BC8 2 THR B 48 HOH B9551 SITE 1 BC9 3 LYS B 52 HOH B9581 HOH B9593 SITE 1 CC1 3 GLY B 134 HIS B 167 HOH B9572 SITE 1 CC2 4 ARG B 92 SER B 118 HOH B9565 HOH B9596 SITE 1 CC3 8 LYS B 96 MET B 183 GOL B 324 HOH B9514 SITE 2 CC3 8 HOH B9576 HOH B9609 HOH B9628 HOH B9629 SITE 1 CC4 5 GOL B 323 HOH B9627 HOH B9629 HOH B9630 SITE 2 CC4 5 HOH B9631 SITE 1 CC5 3 ACY B 314 HOH B9610 HOH B9611 SITE 1 CC6 6 ILE B 5 SER B 7 HOH B9549 HOH B9570 SITE 2 CC6 6 HOH B9597 HOH B9619 CRYST1 105.275 105.275 105.275 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009499 0.00000