HEADER IMMUNE SYSTEM 17-NOV-03 1RID OBSLTE 09-MAY-18 1RID TITLE VACCINIA COMPLEMENT PROTEIN IN COMPLEX WITH HEPARIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT CONTROL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VCP, SECRETORY PROTEIN 35, PROTEIN C3, 28 KDA PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10254; SOURCE 4 STRAIN: WR; SOURCE 5 GENE: C3L; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS COMPLEMENT, REGULATION, SCR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.K.GANESH,S.A.SMITH,G.J.KOTWAL,K.H.M.MURTHY REVDAT 5 09-MAY-18 1RID 1 OBSLTE JRNL REVDAT 4 11-OCT-17 1RID 1 REMARK REVDAT 3 13-JUL-11 1RID 1 VERSN REVDAT 2 24-FEB-09 1RID 1 VERSN REVDAT 1 22-JUN-04 1RID 0 JRNL AUTH W.K.JONES JRNL TITL FINDINGS OF RESEARCH MISCONDUCT JRNL REF FED REG. V. 83 16370 2018 JRNL REFN ISSN 0097-6326 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.K.GANESH,S.A.SMITH,G.J.KOTWAL,K.H.M.MURTHY REMARK 1 TITL STRUCTURE OF VACCINIA COMPLEMENT PROTEIN IN COMPLEX WITH REMARK 1 TITL 2 HEPARIN AND POTENTIAL IMPLICATIONS FOR COMPLEMENT REMARK 1 TITL 3 REGULATION. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 8924 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15178763 REMARK 1 DOI 10.1073/PNAS.0400744101 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 58685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5940 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 274 REMARK 3 SOLVENT ATOMS : 841 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 ENTRY OBSOLETED IN RESPONSE TO US OFFICE OF RESEARCH INTEGRITY REMARK 5 NOTICE 2018-07782 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : SI111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.10400 REMARK 200 R SYM FOR SHELL (I) : 0.10400 REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: NATIVE VCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NACL, 2 MM NICL2, 0.2% BOG, 14% REMARK 280 PEG, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 7 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 100 CB PRO B 122 1.85 REMARK 500 O ILE A 100 CB PRO A 122 1.85 REMARK 500 O SER A 16 N GLU A 18 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 393 O HOH A 393 2755 0.33 REMARK 500 O HOH A 431 O HOH B 522 1554 2.08 REMARK 500 O HOH A 269 O HOH B 348 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 78 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 TYR A 97 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 SER A 114 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 ASN A 118 CB - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 CYS A 171 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU A 197 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 TYR A 219 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 219 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU B 58 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 LEU B 58 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 PHE B 59 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU B 78 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 TYR B 97 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 SER B 114 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 ASN B 118 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 CYS B 171 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU B 197 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ASN B 210 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 VAL B 211 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 TYR B 219 CA - CB - CG ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 139.08 -33.47 REMARK 500 ASN A 10 70.76 60.74 REMARK 500 ASN A 15 89.70 -151.63 REMARK 500 VAL A 17 -18.81 6.03 REMARK 500 ALA A 23 -128.80 -114.31 REMARK 500 TYR A 25 -133.84 -126.97 REMARK 500 ILE A 27 72.08 49.11 REMARK 500 PRO A 37 -73.00 -25.20 REMARK 500 MET A 44 84.36 90.06 REMARK 500 THR A 54 -53.50 158.42 REMARK 500 LEU A 58 -64.79 154.22 REMARK 500 PHE A 59 108.15 78.36 REMARK 500 ILE A 63 -157.29 -140.48 REMARK 500 ASP A 79 69.82 -117.60 REMARK 500 ASP A 84 -96.85 -90.91 REMARK 500 SER A 95 106.61 -37.54 REMARK 500 LYS A 104 135.25 166.47 REMARK 500 SER A 111 -98.89 -158.49 REMARK 500 SER A 114 153.28 149.91 REMARK 500 ASN A 118 -96.71 -88.38 REMARK 500 GLU A 120 -40.93 -144.50 REMARK 500 SER A 126 94.35 98.95 REMARK 500 VAL A 127 90.70 94.27 REMARK 500 PRO A 132 129.46 -38.63 REMARK 500 SER A 136 -70.58 -54.42 REMARK 500 GLU A 144 -144.90 -103.96 REMARK 500 ASP A 145 -128.96 -111.23 REMARK 500 THR A 148 -154.05 63.14 REMARK 500 ASP A 149 -129.49 -104.98 REMARK 500 SER A 159 86.93 -15.86 REMARK 500 ASN A 166 -79.61 -67.96 REMARK 500 SER A 167 48.68 -168.88 REMARK 500 ASP A 178 101.81 177.40 REMARK 500 SER A 199 102.43 -170.98 REMARK 500 SER A 206 -74.23 -115.41 REMARK 500 TYR A 207 -165.71 -59.35 REMARK 500 ASN A 208 130.55 -31.45 REMARK 500 ASN A 210 69.71 151.92 REMARK 500 TYR A 217 -147.83 43.89 REMARK 500 SER A 226 122.98 175.69 REMARK 500 PRO B 8 138.98 -33.40 REMARK 500 ASN B 10 70.61 60.80 REMARK 500 ASN B 15 84.82 -151.53 REMARK 500 VAL B 17 86.48 -27.93 REMARK 500 GLU B 18 57.13 150.73 REMARK 500 ALA B 23 -128.72 -114.40 REMARK 500 TYR B 25 -133.82 -127.00 REMARK 500 ILE B 27 71.97 49.17 REMARK 500 PRO B 37 -72.90 -25.26 REMARK 500 MET B 44 84.48 89.93 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IDS A 245 REMARK 610 IDS B 245 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS B 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN B 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IDS B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGN B 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G40 RELATED DB: PDB REMARK 900 RELATED ID: 1G44 RELATED DB: PDB DBREF 1RID A 1 244 UNP P10998 VCP_VACCV 20 263 DBREF 1RID B 1 244 UNP P10998 VCP_VACCV 20 263 SEQRES 1 A 244 CYS CYS THR ILE PRO SER ARG PRO ILE ASN MET LYS PHE SEQRES 2 A 244 LYS ASN SER VAL GLU THR ASP ALA ASN ALA ASN TYR ASN SEQRES 3 A 244 ILE GLY ASP THR ILE GLU TYR LEU CYS LEU PRO GLY TYR SEQRES 4 A 244 ARG LYS GLN LYS MET GLY PRO ILE TYR ALA LYS CYS THR SEQRES 5 A 244 GLY THR GLY TRP THR LEU PHE ASN GLN CYS ILE LYS ARG SEQRES 6 A 244 ARG CYS PRO SER PRO ARG ASP ILE ASP ASN GLY GLN LEU SEQRES 7 A 244 ASP ILE GLY GLY VAL ASP PHE GLY SER SER ILE THR TYR SEQRES 8 A 244 SER CYS ASN SER GLY TYR HIS LEU ILE GLY GLU SER LYS SEQRES 9 A 244 SER TYR CYS GLU LEU GLY SER THR GLY SER MET VAL TRP SEQRES 10 A 244 ASN PRO GLU ALA PRO ILE CYS GLU SER VAL LYS CYS GLN SEQRES 11 A 244 SER PRO PRO SER ILE SER ASN GLY ARG HIS ASN GLY TYR SEQRES 12 A 244 GLU ASP PHE TYR THR ASP GLY SER VAL VAL THR TYR SER SEQRES 13 A 244 CYS ASN SER GLY TYR SER LEU ILE GLY ASN SER GLY VAL SEQRES 14 A 244 LEU CYS SER GLY GLY GLU TRP SER ASP PRO PRO THR CYS SEQRES 15 A 244 GLN ILE VAL LYS CYS PRO HIS PRO THR ILE SER ASN GLY SEQRES 16 A 244 TYR LEU SER SER GLY PHE LYS ARG SER TYR SER TYR ASN SEQRES 17 A 244 ASP ASN VAL ASP PHE LYS CYS LYS TYR GLY TYR LYS LEU SEQRES 18 A 244 SER GLY SER SER SER SER THR CYS SER PRO GLY ASN THR SEQRES 19 A 244 TRP LYS PRO GLU LEU PRO LYS CYS VAL ARG SEQRES 1 B 244 CYS CYS THR ILE PRO SER ARG PRO ILE ASN MET LYS PHE SEQRES 2 B 244 LYS ASN SER VAL GLU THR ASP ALA ASN ALA ASN TYR ASN SEQRES 3 B 244 ILE GLY ASP THR ILE GLU TYR LEU CYS LEU PRO GLY TYR SEQRES 4 B 244 ARG LYS GLN LYS MET GLY PRO ILE TYR ALA LYS CYS THR SEQRES 5 B 244 GLY THR GLY TRP THR LEU PHE ASN GLN CYS ILE LYS ARG SEQRES 6 B 244 ARG CYS PRO SER PRO ARG ASP ILE ASP ASN GLY GLN LEU SEQRES 7 B 244 ASP ILE GLY GLY VAL ASP PHE GLY SER SER ILE THR TYR SEQRES 8 B 244 SER CYS ASN SER GLY TYR HIS LEU ILE GLY GLU SER LYS SEQRES 9 B 244 SER TYR CYS GLU LEU GLY SER THR GLY SER MET VAL TRP SEQRES 10 B 244 ASN PRO GLU ALA PRO ILE CYS GLU SER VAL LYS CYS GLN SEQRES 11 B 244 SER PRO PRO SER ILE SER ASN GLY ARG HIS ASN GLY TYR SEQRES 12 B 244 GLU ASP PHE TYR THR ASP GLY SER VAL VAL THR TYR SER SEQRES 13 B 244 CYS ASN SER GLY TYR SER LEU ILE GLY ASN SER GLY VAL SEQRES 14 B 244 LEU CYS SER GLY GLY GLU TRP SER ASP PRO PRO THR CYS SEQRES 15 B 244 GLN ILE VAL LYS CYS PRO HIS PRO THR ILE SER ASN GLY SEQRES 16 B 244 TYR LEU SER SER GLY PHE LYS ARG SER TYR SER TYR ASN SEQRES 17 B 244 ASP ASN VAL ASP PHE LYS CYS LYS TYR GLY TYR LYS LEU SEQRES 18 B 244 SER GLY SER SER SER SER THR CYS SER PRO GLY ASN THR SEQRES 19 B 244 TRP LYS PRO GLU LEU PRO LYS CYS VAL ARG HET IDS A 245 10 HET SGN A 246 19 HET IDS A 247 16 HET SGN A 248 19 HET IDS A 249 16 HET SGN A 250 19 HET IDS A 251 16 HET SGN A 252 19 HET IDS B 245 16 HET SGN B 246 19 HET IDS B 247 16 HET SGN B 248 19 HET IDS B 249 16 HET SGN B 250 19 HET IDS B 251 16 HET SGN B 252 19 HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SGN N,O6-DISULFO-GLUCOSAMINE HETSYN IDS O2-SULFO-GLUCURONIC ACID FORMUL 3 IDS 8(C6 H10 O10 S) FORMUL 3 SGN 8(C6 H13 N O11 S2) FORMUL 5 HOH *841(H2 O) SHEET 1 A 3 THR A 30 ILE A 31 0 SHEET 2 A 3 ALA A 49 THR A 52 -1 O ALA A 49 N ILE A 31 SHEET 3 A 3 GLY A 55 THR A 57 -1 O THR A 57 N LYS A 50 SHEET 1 B 2 ARG A 40 LYS A 41 0 SHEET 2 B 2 CYS A 62 ILE A 63 -1 O ILE A 63 N ARG A 40 SHEET 1 C 2 HIS A 98 LEU A 99 0 SHEET 2 C 2 CYS A 124 GLU A 125 -1 O GLU A 125 N HIS A 98 SHEET 1 D 2 ARG A 139 HIS A 140 0 SHEET 2 D 2 TYR A 155 SER A 156 -1 O SER A 156 N ARG A 139 SHEET 1 E 2 SER A 162 ILE A 164 0 SHEET 2 E 2 THR A 181 GLN A 183 -1 O GLN A 183 N SER A 162 SHEET 1 F 2 LYS A 220 SER A 222 0 SHEET 2 F 2 LYS A 241 VAL A 243 -1 O LYS A 241 N SER A 222 SHEET 1 G 2 THR A 228 SER A 230 0 SHEET 2 G 2 THR A 234 LYS A 236 -1 O LYS A 236 N THR A 228 SHEET 1 H 3 THR B 30 ILE B 31 0 SHEET 2 H 3 ALA B 49 THR B 52 -1 O ALA B 49 N ILE B 31 SHEET 3 H 3 GLY B 55 THR B 57 -1 O THR B 57 N LYS B 50 SHEET 1 I 2 ARG B 40 LYS B 41 0 SHEET 2 I 2 CYS B 62 ILE B 63 -1 O ILE B 63 N ARG B 40 SHEET 1 J 2 HIS B 98 LEU B 99 0 SHEET 2 J 2 CYS B 124 GLU B 125 -1 O GLU B 125 N HIS B 98 SHEET 1 K 2 ARG B 139 HIS B 140 0 SHEET 2 K 2 TYR B 155 SER B 156 -1 O SER B 156 N ARG B 139 SHEET 1 L 2 SER B 162 ILE B 164 0 SHEET 2 L 2 THR B 181 GLN B 183 -1 O GLN B 183 N SER B 162 SHEET 1 M 2 LYS B 220 SER B 222 0 SHEET 2 M 2 LYS B 241 VAL B 243 -1 O LYS B 241 N SER B 222 SHEET 1 N 2 THR B 228 SER B 230 0 SHEET 2 N 2 THR B 234 LYS B 236 -1 O LYS B 236 N THR B 228 SSBOND 1 CYS A 2 CYS A 51 1555 1555 2.03 SSBOND 2 CYS A 35 CYS A 62 1555 1555 2.02 SSBOND 3 CYS A 67 CYS A 107 1555 1555 2.03 SSBOND 4 CYS A 93 CYS A 124 1555 1555 2.03 SSBOND 5 CYS A 129 CYS A 171 1555 1555 2.02 SSBOND 6 CYS A 157 CYS A 182 1555 1555 2.03 SSBOND 7 CYS A 187 CYS A 229 1555 1555 2.03 SSBOND 8 CYS A 215 CYS A 242 1555 1555 2.03 SSBOND 9 CYS B 2 CYS B 51 1555 1555 2.03 SSBOND 10 CYS B 35 CYS B 62 1555 1555 2.02 SSBOND 11 CYS B 67 CYS B 107 1555 1555 2.03 SSBOND 12 CYS B 93 CYS B 124 1555 1555 2.03 SSBOND 13 CYS B 129 CYS B 171 1555 1555 2.02 SSBOND 14 CYS B 157 CYS B 182 1555 1555 2.03 SSBOND 15 CYS B 187 CYS B 229 1555 1555 2.03 SSBOND 16 CYS B 215 CYS B 242 1555 1555 2.03 LINK O1 IDS A 245 C4 SGN A 246 1555 1555 1.43 LINK O1 SGN A 246 C4 IDS A 247 1555 1555 1.43 LINK O1 IDS A 247 C4 SGN A 248 1555 1555 1.42 LINK O1 SGN A 248 C4 IDS A 249 1555 1555 1.60 LINK O1 IDS A 249 C4 SGN A 250 1555 1555 1.42 LINK O1 SGN A 250 C4 IDS A 251 1555 1555 1.37 LINK O1 IDS A 251 C4 SGN A 252 1555 1555 1.48 LINK O1 IDS B 245 C4 SGN B 246 1555 1555 1.43 LINK O1 SGN B 246 C4 IDS B 247 1555 1555 1.43 LINK O1 IDS B 247 C4 SGN B 248 1555 1555 1.42 LINK O1 SGN B 248 C4 IDS B 249 1555 1555 1.38 LINK O1 IDS B 249 C4 SGN B 250 1555 1555 1.42 LINK O1 SGN B 250 C4 IDS B 251 1555 1555 1.37 LINK O1 IDS B 251 C4 SGN B 252 1555 1555 1.48 CISPEP 1 LYS A 236 PRO A 237 0 1.84 CISPEP 2 LYS B 236 PRO B 237 0 1.71 SITE 1 AC1 7 SGN A 246 HOH A 263 HOH A 278 HOH A 499 SITE 2 AC1 7 CYS B 35 LEU B 36 PRO B 37 SITE 1 AC2 11 LYS A 214 IDS A 245 IDS A 247 HOH A 382 SITE 2 AC2 11 HOH A 416 HOH A 497 HOH A 536 HOH A 577 SITE 3 AC2 11 HOH A 616 LEU B 36 HOH B 480 SITE 1 AC3 10 LYS A 214 CYS A 215 TYR A 217 TYR A 219 SITE 2 AC3 10 SGN A 246 SGN A 248 HOH A 273 HOH A 357 SITE 3 AC3 10 HOH A 616 ASN B 15 SITE 1 AC4 9 TYR A 219 LYS A 220 IDS A 247 IDS A 249 SITE 2 AC4 9 HOH A 415 HOH A 468 HOH A 641 ASN B 15 SITE 3 AC4 9 THR B 19 SITE 1 AC5 6 GLY A 218 SGN A 248 SGN A 250 HOH A 297 SITE 2 AC5 6 HOH A 669 THR B 19 SITE 1 AC6 8 LYS A 216 TYR A 219 ARG A 244 IDS A 249 SITE 2 AC6 8 IDS A 251 HOH A 450 HOH A 489 HOH A 515 SITE 1 AC7 11 ARG A 244 SGN A 250 SGN A 252 HOH A 261 SITE 2 AC7 11 HOH A 292 HOH A 375 HOH A 431 HOH A 511 SITE 3 AC7 11 HOH A 515 HOH A 646 HOH A 653 SITE 1 AC8 7 IDS A 251 HOH A 326 HOH A 377 HOH A 430 SITE 2 AC8 7 HOH A 431 HOH A 463 HOH A 511 SITE 1 AC9 10 PHE A 13 SGN B 246 HOH B 296 HOH B 392 SITE 2 AC9 10 HOH B 420 HOH B 509 HOH B 559 HOH B 588 SITE 3 AC9 10 HOH B 629 HOH B 642 SITE 1 BC1 9 LYS B 214 IDS B 245 IDS B 247 HOH B 279 SITE 2 BC1 9 HOH B 285 HOH B 292 HOH B 471 HOH B 646 SITE 3 BC1 9 HOH B 649 SITE 1 BC2 6 LYS B 214 CYS B 215 SGN B 246 SGN B 248 SITE 2 BC2 6 HOH B 279 HOH B 586 SITE 1 BC3 9 TYR B 217 LYS B 220 IDS B 247 IDS B 249 SITE 2 BC3 9 HOH B 320 HOH B 496 HOH B 497 HOH B 502 SITE 3 BC3 9 HOH B 536 SITE 1 BC4 7 TYR B 217 GLY B 218 SGN B 248 SGN B 250 SITE 2 BC4 7 HOH B 495 HOH B 502 HOH B 653 SITE 1 BC5 10 LYS B 216 TYR B 217 TYR B 219 ARG B 244 SITE 2 BC5 10 IDS B 249 IDS B 251 HOH B 414 HOH B 422 SITE 3 BC5 10 HOH B 435 HOH B 571 SITE 1 BC6 10 ARG B 244 SGN B 250 SGN B 252 HOH B 263 SITE 2 BC6 10 HOH B 294 HOH B 304 HOH B 307 HOH B 361 SITE 3 BC6 10 HOH B 414 HOH B 656 SITE 1 BC7 9 IDS B 251 HOH B 261 HOH B 275 HOH B 295 SITE 2 BC7 9 HOH B 315 HOH B 338 HOH B 347 HOH B 367 SITE 3 BC7 9 HOH B 466 CRYST1 60.710 76.980 116.740 90.00 91.20 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016472 0.000000 0.000345 0.00000 SCALE2 0.000000 0.012990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008568 0.00000