HEADER ISOMERASE 17-NOV-03 1RII TITLE CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM M. TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-BISPHOSPHOGLYCERATE-DEPENDENT PHOSPHOGLYCERATE MUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PHOSPHOGLYCEROMUTASE, PGAM, BPG-DEPENDENT PGAM, DPGM; COMPND 5 EC: 5.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GPMA, GPM, PGM, GPM1, RV0489, MT0508, MTCY20G9.15, MB0499; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PHOSPHOGLYERATE MUTASE, SH3 DOMAIN BINDING, STRUCTURAL GENOMICS, KEYWDS 2 TBSGC, PROTEIN STRUCTURE INITIATIVE, PSI, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MUELLER,M.R.SAWAYA,S.CHAN,Y.WU,I.PASHKOVA,J.PERRY,D.EISENBERG,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 7 23-AUG-23 1RII 1 REMARK SEQADV REVDAT 6 11-OCT-17 1RII 1 REMARK REVDAT 5 13-JUL-11 1RII 1 VERSN REVDAT 4 24-FEB-09 1RII 1 VERSN REVDAT 3 12-APR-05 1RII 1 JRNL REVDAT 2 01-FEB-05 1RII 1 AUTHOR KEYWDS REMARK REVDAT 1 05-OCT-04 1RII 0 JRNL AUTH P.MULLER,M.R.SAWAYA,I.PASHKOV,S.CHAN,C.NGUYEN,Y.WU, JRNL AUTH 2 L.J.PERRY,D.EISENBERG JRNL TITL THE 1.70 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS PHOSPHOGLYCERATE MUTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 309 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15735341 JRNL DOI 10.1107/S0907444904033190 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.221 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.219 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2664 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 111293 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.206 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.205 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2320 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 93546 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 7846.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 6617.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 11 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 31673 REMARK 3 NUMBER OF RESTRAINTS : 31045 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 ANGLE DISTANCES (A) : 0.022 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.025 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.032 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.038 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.007 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.028 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: BULK SOLVENT WAS TREATED FOLLOWING THE BABINET REMARK 3 -PRINCIPLE REFINING TWO PARAMETERS, USING THE SWAT REMARK 3 COMMAND IN SHELXL. REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56. REMARK 3 HYDROGENS HAVE BEEN ADDED AT GEOMETRICALLY CALCULATED POSITIONS REMARK 3 AND REFINED USING A RIDING MODEL. REMARK 4 REMARK 4 1RII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, SADABS (SHELDRICK REMARK 200 DATA SCALING SOFTWARE : SADABS V. 2003 (SHELDRICK) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06990 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45480 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 5PGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M MAGNESIUM CHLORIDE, REMARK 280 PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE HOMOTETRAMER FORMED BY THE REMARK 300 CHAINS A, B, C AND D WHICH FORMS THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 245 REMARK 465 GLN A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 GLY A 249 REMARK 465 GLY A 250 REMARK 465 VAL A 251 REMARK 465 PRO A 252 REMARK 465 ARG A 253 REMARK 465 GLY A 254 REMARK 465 ALA A 255 REMARK 465 ALA A 256 REMARK 465 ALA A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 240 REMARK 465 ALA B 241 REMARK 465 ALA B 242 REMARK 465 VAL B 243 REMARK 465 ALA B 244 REMARK 465 GLY B 245 REMARK 465 GLN B 246 REMARK 465 GLY B 247 REMARK 465 ARG B 248 REMARK 465 GLY B 249 REMARK 465 GLY B 250 REMARK 465 VAL B 251 REMARK 465 PRO B 252 REMARK 465 ARG B 253 REMARK 465 GLY B 254 REMARK 465 ALA B 255 REMARK 465 ALA B 256 REMARK 465 ALA B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 MET C 1 REMARK 465 GLY C 239 REMARK 465 ALA C 240 REMARK 465 ALA C 241 REMARK 465 ALA C 242 REMARK 465 VAL C 243 REMARK 465 ALA C 244 REMARK 465 GLY C 245 REMARK 465 GLN C 246 REMARK 465 GLY C 247 REMARK 465 ARG C 248 REMARK 465 GLY C 249 REMARK 465 GLY C 250 REMARK 465 VAL C 251 REMARK 465 PRO C 252 REMARK 465 ARG C 253 REMARK 465 GLY C 254 REMARK 465 ALA C 255 REMARK 465 ALA C 256 REMARK 465 ALA C 257 REMARK 465 LEU C 258 REMARK 465 GLU C 259 REMARK 465 HIS C 260 REMARK 465 HIS C 261 REMARK 465 HIS C 262 REMARK 465 HIS C 263 REMARK 465 HIS C 264 REMARK 465 HIS C 265 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 234 REMARK 465 ALA D 235 REMARK 465 ALA D 236 REMARK 465 ALA D 237 REMARK 465 ALA D 238 REMARK 465 GLY D 239 REMARK 465 ALA D 240 REMARK 465 ALA D 241 REMARK 465 ALA D 242 REMARK 465 VAL D 243 REMARK 465 ALA D 244 REMARK 465 GLY D 245 REMARK 465 GLN D 246 REMARK 465 GLY D 247 REMARK 465 ARG D 248 REMARK 465 GLY D 249 REMARK 465 GLY D 250 REMARK 465 VAL D 251 REMARK 465 PRO D 252 REMARK 465 ARG D 253 REMARK 465 GLY D 254 REMARK 465 ALA D 255 REMARK 465 ALA D 256 REMARK 465 ALA D 257 REMARK 465 LEU D 258 REMARK 465 GLU D 259 REMARK 465 HIS D 260 REMARK 465 HIS D 261 REMARK 465 HIS D 262 REMARK 465 HIS D 263 REMARK 465 HIS D 264 REMARK 465 HIS D 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 ARG C 118 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 118 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 128 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP C 166 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG D 83 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG D 83 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG D 83 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 84 CD - NE - CZ ANGL. DEV. = 23.7 DEGREES REMARK 500 ARG D 84 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG D 226 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG D 226 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 60.06 27.97 REMARK 500 LEU A 51 51.60 -114.90 REMARK 500 GLU A 90 157.26 -47.53 REMARK 500 THR A 150 156.72 179.60 REMARK 500 ALA A 182 -139.34 -148.97 REMARK 500 ALA A 242 -34.31 -38.87 REMARK 500 VAL A 243 156.58 -18.36 REMARK 500 LEU B 51 52.03 -116.81 REMARK 500 VAL B 167 -50.38 -122.49 REMARK 500 ALA B 182 -136.74 -154.76 REMARK 500 ALA B 237 2.56 -59.07 REMARK 500 VAL C 167 -54.72 -120.72 REMARK 500 ALA C 182 -137.25 -153.72 REMARK 500 LEU D 51 69.60 -114.76 REMARK 500 ALA D 182 -139.71 -151.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0489 RELATED DB: TARGETDB DBREF 1RII A 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 DBREF 1RII B 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 DBREF 1RII C 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 DBREF 1RII D 1 249 UNP P0A5R6 GPMA_MYCTU 1 249 SEQADV 1RII GLY A 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL A 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO A 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG A 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY A 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA A 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA A 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA A 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU A 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU A 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS A 265 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY B 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL B 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO B 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG B 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY B 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA B 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA B 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA B 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU B 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU B 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS B 265 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY C 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL C 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO C 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG C 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY C 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA C 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA C 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA C 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU C 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU C 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS C 265 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY D 250 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII VAL D 251 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII PRO D 252 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ARG D 253 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLY D 254 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA D 255 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA D 256 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII ALA D 257 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII LEU D 258 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII GLU D 259 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 260 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 261 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 262 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 263 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 264 UNP P0A5R6 CLONING ARTIFACT SEQADV 1RII HIS D 265 UNP P0A5R6 CLONING ARTIFACT SEQRES 1 A 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 A 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 A 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 A 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 A 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 A 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 A 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 A 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 A 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 A 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 A 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 A 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 A 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 A 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 A 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 A 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 A 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 A 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 A 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 A 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 B 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 B 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 B 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 B 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 B 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 B 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 B 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 B 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 B 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 B 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 B 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 B 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 B 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 B 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 B 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 B 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 B 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 B 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 B 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS SEQRES 1 C 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 C 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 C 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 C 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 C 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 C 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 C 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 C 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 C 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 C 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 C 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 C 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 C 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 C 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 C 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 C 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 C 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 C 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 C 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 C 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 C 265 HIS HIS HIS HIS HIS SEQRES 1 D 265 MET ALA ASN THR GLY SER LEU VAL LEU LEU ARG HIS GLY SEQRES 2 D 265 GLU SER ASP TRP ASN ALA LEU ASN LEU PHE THR GLY TRP SEQRES 3 D 265 VAL ASP VAL GLY LEU THR ASP LYS GLY GLN ALA GLU ALA SEQRES 4 D 265 VAL ARG SER GLY GLU LEU ILE ALA GLU HIS ASP LEU LEU SEQRES 5 D 265 PRO ASP VAL LEU TYR THR SER LEU LEU ARG ARG ALA ILE SEQRES 6 D 265 THR THR ALA HIS LEU ALA LEU ASP SER ALA ASP ARG LEU SEQRES 7 D 265 TRP ILE PRO VAL ARG ARG SER TRP ARG LEU ASN GLU ARG SEQRES 8 D 265 HIS TYR GLY ALA LEU GLN GLY LEU ASP LYS ALA GLU THR SEQRES 9 D 265 LYS ALA ARG TYR GLY GLU GLU GLN PHE MET ALA TRP ARG SEQRES 10 D 265 ARG SER TYR ASP THR PRO PRO PRO PRO ILE GLU ARG GLY SEQRES 11 D 265 SER GLN PHE SER GLN ASP ALA ASP PRO ARG TYR ALA ASP SEQRES 12 D 265 ILE GLY GLY GLY PRO LEU THR GLU CYS LEU ALA ASP VAL SEQRES 13 D 265 VAL ALA ARG PHE LEU PRO TYR PHE THR ASP VAL ILE VAL SEQRES 14 D 265 GLY ASP LEU ARG VAL GLY LYS THR VAL LEU ILE VAL ALA SEQRES 15 D 265 HIS GLY ASN SER LEU ARG ALA LEU VAL LYS HIS LEU ASP SEQRES 16 D 265 GLN MET SER ASP ASP GLU ILE VAL GLY LEU ASN ILE PRO SEQRES 17 D 265 THR GLY ILE PRO LEU ARG TYR ASP LEU ASP SER ALA MET SEQRES 18 D 265 ARG PRO LEU VAL ARG GLY GLY THR TYR LEU ASP PRO GLU SEQRES 19 D 265 ALA ALA ALA ALA GLY ALA ALA ALA VAL ALA GLY GLN GLY SEQRES 20 D 265 ARG GLY GLY VAL PRO ARG GLY ALA ALA ALA LEU GLU HIS SEQRES 21 D 265 HIS HIS HIS HIS HIS HET GOL A 501 6 HET GOL B 502 6 HET GOL D 503 6 HET GOL D 504 6 HET GOL D 505 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *451(H2 O) HELIX 1 1 SER A 15 LEU A 20 1 6 HELIX 2 2 THR A 32 HIS A 49 1 18 HELIX 3 3 LEU A 61 ASP A 76 1 16 HELIX 4 4 TRP A 86 ASN A 89 5 4 HELIX 5 5 TYR A 93 GLN A 97 5 5 HELIX 6 6 ASP A 100 GLY A 109 1 10 HELIX 7 7 GLY A 109 SER A 119 1 11 HELIX 8 8 ASP A 138 GLY A 145 5 8 HELIX 9 9 CYS A 152 VAL A 167 1 16 HELIX 10 10 VAL A 167 VAL A 174 1 8 HELIX 11 11 HIS A 183 ASP A 195 1 13 HELIX 12 12 SER A 198 LEU A 205 1 8 HELIX 13 13 ASP A 232 VAL A 243 1 12 HELIX 14 14 SER B 15 ASN B 21 1 7 HELIX 15 15 THR B 32 HIS B 49 1 18 HELIX 16 16 LEU B 61 ASP B 76 1 16 HELIX 17 17 TRP B 86 ASN B 89 5 4 HELIX 18 18 TYR B 93 GLN B 97 5 5 HELIX 19 19 ASP B 100 SER B 119 1 20 HELIX 20 20 ASP B 138 GLY B 145 5 8 HELIX 21 21 CYS B 152 VAL B 167 1 16 HELIX 22 22 VAL B 167 VAL B 174 1 8 HELIX 23 23 HIS B 183 ASP B 195 1 13 HELIX 24 24 SER B 198 GLY B 204 1 7 HELIX 25 25 ASP B 232 ALA B 237 1 6 HELIX 26 26 SER C 15 LEU C 20 1 6 HELIX 27 27 THR C 32 HIS C 49 1 18 HELIX 28 28 LEU C 61 ALA C 75 1 15 HELIX 29 29 TRP C 86 ASN C 89 5 4 HELIX 30 30 TYR C 93 GLN C 97 5 5 HELIX 31 31 ASP C 100 GLY C 109 1 10 HELIX 32 32 GLY C 109 SER C 119 1 11 HELIX 33 33 ASP C 138 GLY C 145 5 8 HELIX 34 34 CYS C 152 VAL C 167 1 16 HELIX 35 35 VAL C 167 VAL C 174 1 8 HELIX 36 36 HIS C 183 ASP C 195 1 13 HELIX 37 37 GLU C 201 LEU C 205 5 5 HELIX 38 38 SER D 15 LEU D 20 1 6 HELIX 39 39 THR D 32 HIS D 49 1 18 HELIX 40 40 LEU D 61 ALA D 75 1 15 HELIX 41 41 TRP D 86 ASN D 89 5 4 HELIX 42 42 TYR D 93 GLN D 97 5 5 HELIX 43 43 ASP D 100 SER D 119 1 20 HELIX 44 44 ASP D 138 GLY D 145 5 8 HELIX 45 45 CYS D 152 VAL D 167 1 16 HELIX 46 46 VAL D 167 VAL D 174 1 8 HELIX 47 47 HIS D 183 GLN D 196 1 14 HELIX 48 48 SER D 198 VAL D 203 1 6 SHEET 1 A 6 VAL A 82 ARG A 84 0 SHEET 2 A 6 VAL A 55 THR A 58 1 N LEU A 56 O ARG A 83 SHEET 3 A 6 VAL A 178 ALA A 182 1 O VAL A 181 N TYR A 57 SHEET 4 A 6 SER A 6 ARG A 11 1 N VAL A 8 O VAL A 178 SHEET 5 A 6 LEU A 213 ASP A 216 -1 O TYR A 215 N LEU A 7 SHEET 6 A 6 THR A 229 TYR A 230 -1 O THR A 229 N ARG A 214 SHEET 1 B 6 VAL B 82 ARG B 84 0 SHEET 2 B 6 VAL B 55 THR B 58 1 N LEU B 56 O ARG B 83 SHEET 3 B 6 VAL B 178 ALA B 182 1 O LEU B 179 N TYR B 57 SHEET 4 B 6 SER B 6 ARG B 11 1 N VAL B 8 O VAL B 178 SHEET 5 B 6 LEU B 213 ASP B 216 -1 O TYR B 215 N LEU B 7 SHEET 6 B 6 THR B 229 TYR B 230 -1 O THR B 229 N ARG B 214 SHEET 1 C 6 VAL C 82 ARG C 84 0 SHEET 2 C 6 VAL C 55 THR C 58 1 N LEU C 56 O ARG C 83 SHEET 3 C 6 VAL C 178 ALA C 182 1 O LEU C 179 N TYR C 57 SHEET 4 C 6 LEU C 7 ARG C 11 1 N VAL C 8 O VAL C 178 SHEET 5 C 6 LEU C 213 TYR C 215 -1 O TYR C 215 N LEU C 7 SHEET 6 C 6 THR C 229 TYR C 230 -1 O THR C 229 N ARG C 214 SHEET 1 D 6 VAL D 82 ARG D 84 0 SHEET 2 D 6 VAL D 55 THR D 58 1 N LEU D 56 O ARG D 83 SHEET 3 D 6 VAL D 178 ALA D 182 1 O LEU D 179 N TYR D 57 SHEET 4 D 6 LEU D 7 ARG D 11 1 N VAL D 8 O VAL D 178 SHEET 5 D 6 LEU D 213 TYR D 215 -1 O TYR D 215 N LEU D 7 SHEET 6 D 6 THR D 229 TYR D 230 -1 O THR D 229 N ARG D 214 SITE 1 AC1 7 HIS A 12 SER A 15 ASN A 18 THR A 24 SITE 2 AC1 7 ARG A 63 GLU A 90 HOH A 622 SITE 1 AC2 9 HIS B 12 SER B 15 ASN B 18 THR B 24 SITE 2 AC2 9 ARG B 63 GLU B 90 HIS B 183 HOH B 607 SITE 3 AC2 9 HOH B1001 SITE 1 AC3 9 HIS D 12 SER D 15 ASN D 18 THR D 24 SITE 2 AC3 9 ARG D 63 GLU D 90 HIS D 183 HOH D 636 SITE 3 AC3 9 HOH D 814 SITE 1 AC4 2 GLN D 132 HOH D 939 SITE 1 AC5 5 ARG C 83 TYR D 57 ARG D 83 VAL D 167 SITE 2 AC5 5 HOH D 888 CRYST1 58.914 136.790 65.929 90.00 97.78 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016974 0.000000 0.002319 0.00000 SCALE2 0.000000 0.007310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015309 0.00000