HEADER PROTEIN BINDING 19-NOV-03 1RJH TITLE STRUCTURE OF THE CALCIUM FREE FORM OF THE C-TYPE LECTIN-LIKE DOMAIN OF TITLE 2 TETRANECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRANECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TN, PLASMINOGEN-KRINGLE 4 BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7H6FXATN3 KEYWDS APO, CALCIUM FREE, CTLD, C-TYPE LECTIN-LIKE DOMAIN, PLASMINOGEN KEYWDS 2 KRINGLE 4 BINDING, TETRANECTIN, TRANS PROLINE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.NIELBO,J.K.THOMSEN,J.H.GRAVERSEN,M.ETZERODT,F.M.POULSEN, AUTHOR 2 H.C.THOEGERSEN REVDAT 3 02-MAR-22 1RJH 1 REMARK REVDAT 2 24-FEB-09 1RJH 1 VERSN REVDAT 1 20-JUL-04 1RJH 0 JRNL AUTH S.NIELBO,J.K.THOMSEN,J.H.GRAVERSEN,P.H.JENSEN,M.ETZERODT, JRNL AUTH 2 F.M.POULSEN,H.C.THOEGERSEN JRNL TITL STRUCTURE OF THE PLASMINOGEN KRINGLE 4 BINDING CALCIUM-FREE JRNL TITL 2 FORM OF THE C-TYPE LECTIN-LIKE DOMAIN OF TETRANECTIN. JRNL REF BIOCHEMISTRY V. 43 8636 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15236571 JRNL DOI 10.1021/BI049570S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1, CNS 1.1 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON 1552 NOE REMARK 3 -DERIVED DISTANCE RESTRAINTS AND 194 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1RJH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020803. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 1 MM NAN3, 2 MM EDTA REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM U-15N-13C; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1, PRONTO 20020313, X REMARK 210 -PLOR 98.1, CYANA 1.0.6, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING PROTOCOL REMARK 210 WITH AN EXPLICIT LAYER OF WATER REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD SPECTRA FROM REMARK 210 THE VARIAN PROTEIN NMR PACK. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 109 HZ2 LYS A 166 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 103 -55.78 -153.95 REMARK 500 1 GLU A 107 36.95 -94.77 REMARK 500 1 ASP A 116 39.54 -87.52 REMARK 500 1 MET A 117 -135.84 -77.95 REMARK 500 1 ALA A 118 43.84 -81.61 REMARK 500 1 ASN A 160 -41.56 -176.65 REMARK 500 1 ILE A 180 -49.06 -145.09 REMARK 500 2 SER A 103 -57.54 -138.78 REMARK 500 2 THR A 138 34.60 -94.25 REMARK 500 2 LYS A 148 98.91 -67.41 REMARK 500 2 CYS A 152 143.90 83.37 REMARK 500 2 ASN A 160 -34.35 -174.51 REMARK 500 2 PRO A 173 -178.50 -62.58 REMARK 500 3 SER A 103 -64.60 -151.69 REMARK 500 3 ASN A 106 -62.66 172.98 REMARK 500 3 GLU A 107 37.46 -86.30 REMARK 500 3 MET A 117 -162.10 -126.18 REMARK 500 3 CYS A 152 110.80 78.79 REMARK 500 3 ALA A 159 -63.99 -90.75 REMARK 500 3 ASN A 160 -19.92 -177.72 REMARK 500 3 PRO A 173 -177.92 -63.11 REMARK 500 4 SER A 103 -46.66 -149.42 REMARK 500 4 ASN A 160 -25.76 -169.68 REMARK 500 4 LYS A 166 -152.68 -153.69 REMARK 500 4 PRO A 173 -177.68 -67.01 REMARK 500 4 ILE A 180 111.66 -164.82 REMARK 500 5 SER A 85 109.94 -54.09 REMARK 500 5 SER A 103 -54.61 -153.63 REMARK 500 5 THR A 141 -74.98 -110.79 REMARK 500 5 ASP A 145 -56.34 -145.62 REMARK 500 5 LYS A 148 99.44 -62.90 REMARK 500 5 ASN A 160 -29.35 175.61 REMARK 500 5 PHE A 164 -168.01 -127.55 REMARK 500 5 PRO A 173 -178.98 -67.26 REMARK 500 5 ILE A 180 -70.89 -107.04 REMARK 500 6 SER A 103 -62.98 -152.07 REMARK 500 6 ASN A 106 -57.46 173.80 REMARK 500 6 GLU A 107 39.65 -85.81 REMARK 500 6 THR A 138 39.56 -84.06 REMARK 500 6 CYS A 152 100.13 70.94 REMARK 500 6 ASN A 160 -27.67 -177.78 REMARK 500 6 ILE A 180 -24.83 63.15 REMARK 500 7 SER A 103 -58.92 -154.87 REMARK 500 7 ALA A 118 -65.23 -107.49 REMARK 500 7 ALA A 119 50.71 -166.18 REMARK 500 7 ASN A 160 -40.99 178.82 REMARK 500 8 SER A 103 -59.52 -153.18 REMARK 500 8 ASN A 106 -54.69 175.29 REMARK 500 8 GLU A 107 36.48 -78.91 REMARK 500 8 ALA A 119 63.30 65.70 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TN3 RELATED DB: PDB REMARK 900 XRAY STRUCTURE OF THE C-TYPE LECTIN-LIKE DOMAIN OF HUMAN REMARK 900 TETRANECTIN (TN3) WITH TWO CALCIUM IONS BOUND. REMARK 900 RELATED ID: 1HTN RELATED DB: PDB REMARK 900 XRAY STRUCTURE OF FULL LENGTH TETRANECTIN (TN) WITH TWO CALCIUM REMARK 900 IONS BOUND IN THE C-TYPE LECTIN-LIKE DOMAIN. DBREF 1RJH A 64 181 UNP P05452 TETN_HUMAN 85 202 SEQRES 1 A 118 PHE THR GLN THR LYS THR PHE HIS GLU ALA SER GLU ASP SEQRES 2 A 118 CYS ILE SER ARG GLY GLY THR LEU SER THR PRO GLN THR SEQRES 3 A 118 GLY SER GLU ASN ASP ALA LEU TYR GLU TYR LEU ARG GLN SEQRES 4 A 118 SER VAL GLY ASN GLU ALA GLU ILE TRP LEU GLY LEU ASN SEQRES 5 A 118 ASP MET ALA ALA GLU GLY THR TRP VAL ASP MET THR GLY SEQRES 6 A 118 ALA ARG ILE ALA TYR LYS ASN TRP GLU THR GLU ILE THR SEQRES 7 A 118 ALA GLN PRO ASP GLY GLY LYS THR GLU ASN CYS ALA VAL SEQRES 8 A 118 LEU SER GLY ALA ALA ASN GLY LYS TRP PHE ASP LYS ARG SEQRES 9 A 118 CYS ARG ASP GLN LEU PRO TYR ILE CYS GLN PHE GLY ILE SEQRES 10 A 118 VAL HELIX 1 1 THR A 69 ARG A 80 1 12 HELIX 2 2 THR A 89 GLN A 102 1 14 SHEET 1 A 2 GLY A 82 LEU A 84 0 SHEET 2 A 2 CYS A 176 PHE A 178 -1 O GLN A 177 N THR A 83 SHEET 1 B 3 GLU A 109 TRP A 111 0 SHEET 2 B 3 ALA A 153 SER A 156 -1 O LEU A 155 N ILE A 110 SHEET 3 B 3 TRP A 163 ASP A 165 -1 O PHE A 164 N VAL A 154 SHEET 1 C 2 LEU A 114 ASN A 115 0 SHEET 2 C 2 VAL A 124 ASP A 125 -1 O VAL A 124 N ASN A 115 SSBOND 1 CYS A 77 CYS A 176 1555 1555 2.03 SSBOND 2 CYS A 152 CYS A 168 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1