HEADER TRANSLATION 21-NOV-03 1RK8 TITLE STRUCTURE OF THE CYTOSOLIC PROTEIN PYM BOUND TO THE MAGO-Y14 CORE OF TITLE 2 THE EXON JUNCTION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG8781-PA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RBD DOMAIN; COMPND 5 SYNONYM: CG8781-PA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MAGO NASHI PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: FULL-LENGTH; COMPND 11 SYNONYM: CG9401-PA; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: WITHIN THE BGCN GENE INTRON PROTEIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-58); COMPND 17 SYNONYM: PYM PROTEIN; CG30176-PA; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: TSU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 11 ORGANISM_COMMON: FRUIT FLY; SOURCE 12 ORGANISM_TAXID: 7227; SOURCE 13 GENE: MAGO,MGN,CG9401; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 19 ORGANISM_COMMON: FRUIT FLY; SOURCE 20 ORGANISM_TAXID: 7227; SOURCE 21 GENE: WIBG,PYM,CG30176/CG10330; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MRNA PROCESSING; RRM; RBD; NMD; OSKAR MRNA LOCALIZATION, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR F.BONO,J.EBERT,T.GUETTLER,E.IZAURRALDE,E.CONTI REVDAT 4 14-FEB-24 1RK8 1 REMARK REVDAT 3 28-JUL-21 1RK8 1 REMARK LINK REVDAT 2 24-FEB-09 1RK8 1 VERSN REVDAT 1 13-APR-04 1RK8 0 JRNL AUTH F.BONO,J.EBERT,L.UNTERHOLZNER,T.GUETTLER,E.IZAURRALDE, JRNL AUTH 2 E.CONTI JRNL TITL MOLECULAR INSIGHTS INTO THE INTERACTION OF PYM WITH THE JRNL TITL 2 MAGO-Y14 CORE OF THE EXON JUNCTION COMPLEX JRNL REF EMBO REP. V. 5 304 2004 JRNL REFN ISSN 1469-221X JRNL PMID 14968132 JRNL DOI 10.1038/SJ.EMBOR.7400091 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 25750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.003 REMARK 3 BOND ANGLES (DEGREES) : 1.190 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-03. REMARK 100 THE DEPOSITION ID IS D_1000020829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 400, CACL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.06950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.17850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.17850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.60425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.17850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.17850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.53475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.17850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.17850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.60425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.17850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.17850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 14.53475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.06950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 ASP A 6 REMARK 465 ILE A 7 REMARK 465 ASP A 8 REMARK 465 ASN A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 465 PHE A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 ASP A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 18 REMARK 465 GLY A 19 REMARK 465 ASP A 20 REMARK 465 GLN A 21 REMARK 465 GLY A 22 REMARK 465 ILE A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 25 REMARK 465 LEU A 26 REMARK 465 LYS A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 LYS A 31 REMARK 465 HIS A 32 REMARK 465 ARG A 33 REMARK 465 LYS A 34 REMARK 465 GLY A 35 REMARK 465 ARG A 36 REMARK 465 GLY A 37 REMARK 465 PHE A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 ASP A 41 REMARK 465 SER A 42 REMARK 465 ASN A 43 REMARK 465 THR A 44 REMARK 465 ARG A 45 REMARK 465 GLU A 46 REMARK 465 ALA A 47 REMARK 465 ILE A 48 REMARK 465 HIS A 49 REMARK 465 SER A 50 REMARK 465 TYR A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 VAL A 54 REMARK 465 ARG A 55 REMARK 465 ASN A 56 REMARK 465 GLU A 57 REMARK 465 ASP A 58 REMARK 465 ASP A 59 REMARK 465 ASP A 60 REMARK 465 GLU A 61 REMARK 465 LEU A 62 REMARK 465 GLU A 63 REMARK 465 PRO A 64 REMARK 465 GLY A 65 REMARK 465 GLU A 71 REMARK 465 PRO A 154 REMARK 465 LYS A 155 REMARK 465 ARG A 156 REMARK 465 VAL A 157 REMARK 465 LYS A 158 REMARK 465 LYS A 159 REMARK 465 SER A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 ARG A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 165 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 HIS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 LYS B 17 REMARK 465 PHE B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 38 REMARK 465 SER B 39 REMARK 465 ASN B 40 REMARK 465 TYR B 41 REMARK 465 LYS B 42 REMARK 465 ASN B 43 REMARK 465 ASP B 44 REMARK 465 THR B 45 REMARK 465 LYS B 145 REMARK 465 PRO B 146 REMARK 465 ILE B 147 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 36 REMARK 465 GLU C 37 REMARK 465 GLU C 38 REMARK 465 VAL C 39 REMARK 465 PRO C 40 REMARK 465 LEU C 41 REMARK 465 TYR C 42 REMARK 465 GLU C 43 REMARK 465 SER C 44 REMARK 465 LYS C 45 REMARK 465 GLY C 46 REMARK 465 LYS C 47 REMARK 465 GLN C 48 REMARK 465 PHE C 49 REMARK 465 VAL C 50 REMARK 465 ALA C 51 REMARK 465 GLN C 52 REMARK 465 ARG C 53 REMARK 465 GLN C 54 REMARK 465 ALA C 55 REMARK 465 GLY C 56 REMARK 465 VAL C 57 REMARK 465 PRO C 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 73 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 73 CZ3 CH2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 MET B 46 CG SD CE REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 ARG B 83 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 84 CG1 CG2 REMARK 470 ASP B 95 CG OD1 OD2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 SER B 114 OG REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLN C 6 CG CD OE1 NE2 REMARK 470 ARG C 28 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 112 5.67 -69.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A9002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD2 REMARK 620 2 GLU A 91 OE1 127.1 REMARK 620 3 GLU A 91 OE2 87.2 47.0 REMARK 620 4 ASP A 147 OD1 99.0 105.1 90.4 REMARK 620 5 HOH A9018 O 82.9 149.0 159.3 73.4 REMARK 620 6 HOH A9019 O 156.3 73.7 116.4 83.9 75.4 REMARK 620 7 HOH A9020 O 95.6 73.6 100.7 162.1 98.3 78.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A9003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD2 REMARK 620 2 ASP A 87 OD1 48.8 REMARK 620 3 GLU A 88 OE1 96.5 78.5 REMARK 620 4 GLU A 88 OE2 80.1 102.6 50.6 REMARK 620 5 GLN A 145 OE1 153.7 157.4 92.0 86.3 REMARK 620 6 HOH A9017 O 80.3 89.8 166.6 140.2 96.5 REMARK 620 7 HOH A9018 O 82.4 130.3 122.6 73.1 72.0 70.2 REMARK 620 8 HOH A9077 O 123.5 79.4 92.8 140.7 80.7 78.4 135.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A9001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE2 REMARK 620 2 HOH A9027 O 178.3 REMARK 620 3 HOH A9028 O 96.4 82.8 REMARK 620 4 HOH A9029 O 97.1 84.1 70.1 REMARK 620 5 HOH A9071 O 94.7 83.7 72.6 141.9 REMARK 620 6 SER C 8 O 91.8 89.8 135.2 65.2 150.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 9003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HL6 RELATED DB: PDB REMARK 900 DROSOPHILA MAGO-Y14 COMPLEX (FULL-LENGTH) REMARK 900 RELATED ID: 1OO0 RELATED DB: PDB REMARK 900 DROSOPHILA MAGO-Y14 COMPLEX REMARK 900 RELATED ID: 1P27 RELATED DB: PDB REMARK 900 HUMAN MAGO-Y14 COMPLEX DBREF 1RK8 A 1 165 UNP Q9V535 RBM8A_DROME 1 165 DBREF 1RK8 B 1 147 UNP P49028 MGN_DROME 1 147 DBREF 1RK8 C 1 58 UNP P82804 WIBG_DROME 1 58 SEQRES 1 A 165 MET ALA ASP VAL LEU ASP ILE ASP ASN ALA GLU GLU PHE SEQRES 2 A 165 GLU VAL ASP GLU ASP GLY ASP GLN GLY ILE VAL ARG LEU SEQRES 3 A 165 LYS GLU LYS ALA LYS HIS ARG LYS GLY ARG GLY PHE GLY SEQRES 4 A 165 SER ASP SER ASN THR ARG GLU ALA ILE HIS SER TYR GLU SEQRES 5 A 165 ARG VAL ARG ASN GLU ASP ASP ASP GLU LEU GLU PRO GLY SEQRES 6 A 165 PRO GLN ARG SER VAL GLU GLY TRP ILE LEU PHE VAL THR SEQRES 7 A 165 SER ILE HIS GLU GLU ALA GLN GLU ASP GLU ILE GLN GLU SEQRES 8 A 165 LYS PHE CYS ASP TYR GLY GLU ILE LYS ASN ILE HIS LEU SEQRES 9 A 165 ASN LEU ASP ARG ARG THR GLY PHE SER LYS GLY TYR ALA SEQRES 10 A 165 LEU VAL GLU TYR GLU THR HIS LYS GLN ALA LEU ALA ALA SEQRES 11 A 165 LYS GLU ALA LEU ASN GLY ALA GLU ILE MET GLY GLN THR SEQRES 12 A 165 ILE GLN VAL ASP TRP CYS PHE VAL LYS GLY PRO LYS ARG SEQRES 13 A 165 VAL LYS LYS SER GLU LYS ARG ARG ARG SEQRES 1 B 147 MET SER THR GLU ASP PHE TYR LEU ARG TYR TYR VAL GLY SEQRES 2 B 147 HIS LYS GLY LYS PHE GLY HIS GLU PHE LEU GLU PHE GLU SEQRES 3 B 147 PHE ARG PRO ASP GLY LYS LEU ARG TYR ALA ASN ASN SER SEQRES 4 B 147 ASN TYR LYS ASN ASP THR MET ILE ARG LYS GLU ALA PHE SEQRES 5 B 147 VAL HIS GLN SER VAL MET GLU GLU LEU LYS ARG ILE ILE SEQRES 6 B 147 ILE ASP SER GLU ILE MET GLN GLU ASP ASP LEU PRO TRP SEQRES 7 B 147 PRO PRO PRO ASP ARG VAL GLY ARG GLN GLU LEU GLU ILE SEQRES 8 B 147 VAL ILE GLY ASP GLU HIS ILE SER PHE THR THR SER LYS SEQRES 9 B 147 THR GLY SER LEU VAL ASP VAL ASN ARG SER LYS ASP PRO SEQRES 10 B 147 GLU GLY LEU ARG CYS PHE TYR TYR LEU VAL GLN ASP LEU SEQRES 11 B 147 LYS CYS LEU VAL PHE SER LEU ILE GLY LEU HIS PHE LYS SEQRES 12 B 147 ILE LYS PRO ILE SEQRES 1 C 58 MET SER THR TYR LEU GLN SER SER GLU GLY LYS PHE ILE SEQRES 2 C 58 PRO ALA THR LYS ARG PRO ASP GLY THR TRP ARG LYS ALA SEQRES 3 C 58 ARG ARG VAL LYS ASP GLY TYR VAL PRO GLN GLU GLU VAL SEQRES 4 C 58 PRO LEU TYR GLU SER LYS GLY LYS GLN PHE VAL ALA GLN SEQRES 5 C 58 ARG GLN ALA GLY VAL PRO HET CA A9001 1 HET CA A9002 1 HET CA A9003 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *142(H2 O) HELIX 1 1 GLN A 85 CYS A 94 1 10 HELIX 2 2 ASP A 95 GLY A 97 5 3 HELIX 3 3 THR A 123 ASN A 135 1 13 HELIX 4 4 HIS B 54 GLU B 69 1 16 HELIX 5 5 ILE B 70 GLU B 73 5 4 HELIX 6 6 SER B 107 ASN B 112 1 6 HELIX 7 7 ASP B 116 PHE B 142 1 27 SHEET 1 A 4 ILE A 99 LEU A 106 0 SHEET 2 A 4 SER A 113 TYR A 121 -1 O LEU A 118 N HIS A 103 SHEET 3 A 4 TRP A 73 THR A 78 -1 N VAL A 77 O ALA A 117 SHEET 4 A 4 GLN A 145 TRP A 148 -1 O ASP A 147 N PHE A 76 SHEET 1 B 2 GLU A 138 ILE A 139 0 SHEET 2 B 2 GLN A 142 THR A 143 -1 O GLN A 142 N ILE A 139 SHEET 1 C 7 PHE A 150 VAL A 151 0 SHEET 2 C 7 ARG B 48 VAL B 53 -1 O PHE B 52 N VAL A 151 SHEET 3 C 7 LYS B 32 ALA B 36 -1 N LEU B 33 O ALA B 51 SHEET 4 C 7 LEU B 23 PHE B 27 -1 N GLU B 24 O ALA B 36 SHEET 5 C 7 PHE B 6 GLY B 13 -1 N LEU B 8 O PHE B 27 SHEET 6 C 7 ARG B 86 ILE B 93 -1 O ARG B 86 N GLY B 13 SHEET 7 C 7 GLU B 96 SER B 103 -1 O PHE B 100 N LEU B 89 SHEET 1 D 3 LEU C 5 SER C 7 0 SHEET 2 D 3 GLY C 10 ILE C 13 -1 O GLY C 10 N SER C 7 SHEET 3 D 3 ARG C 27 ARG C 28 -1 O ARG C 27 N ILE C 13 SHEET 1 E 2 THR C 16 LYS C 17 0 SHEET 2 E 2 TRP C 23 ARG C 24 -1 O ARG C 24 N THR C 16 LINK OD2 ASP A 87 CA CA A9002 1555 1555 2.48 LINK OD2 ASP A 87 CA CA A9003 1555 1555 2.53 LINK OD1 ASP A 87 CA CA A9003 1555 1555 2.72 LINK OE1 GLU A 88 CA CA A9003 1555 1555 2.63 LINK OE2 GLU A 88 CA CA A9003 1555 1555 2.53 LINK OE1 GLU A 91 CA CA A9002 1555 1555 2.87 LINK OE2 GLU A 91 CA CA A9002 1555 1555 2.59 LINK OE2 GLU A 138 CA CA A9001 1555 1555 2.47 LINK OE1 GLN A 145 CA CA A9003 3644 1555 2.49 LINK OD1 ASP A 147 CA CA A9002 3644 1555 2.40 LINK CA CA A9001 O HOH A9027 1555 4565 2.74 LINK CA CA A9001 O HOH A9028 1555 1555 2.80 LINK CA CA A9001 O HOH A9029 1555 1555 2.81 LINK CA CA A9001 O HOH A9071 1555 4565 3.07 LINK CA CA A9001 O SER C 8 1555 2765 2.54 LINK CA CA A9002 O HOH A9018 1555 1555 2.80 LINK CA CA A9002 O HOH A9019 1555 1555 2.72 LINK CA CA A9002 O HOH A9020 1555 1555 2.78 LINK CA CA A9003 O HOH A9017 1555 1555 2.78 LINK CA CA A9003 O HOH A9018 1555 1555 2.78 LINK CA CA A9003 O HOH A9077 1555 1555 2.77 SITE 1 AC1 6 GLU A 138 HOH A9027 HOH A9028 HOH A9029 SITE 2 AC1 6 HOH A9071 SER C 8 SITE 1 AC2 7 ASP A 87 GLU A 88 GLU A 91 ASP A 147 SITE 2 AC2 7 HOH A9018 HOH A9019 HOH A9020 SITE 1 AC3 6 ASP A 87 GLU A 88 GLN A 145 HOH A9017 SITE 2 AC3 6 HOH A9018 HOH A9077 CRYST1 106.357 106.357 58.139 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017200 0.00000