data_1RKA # _entry.id 1RKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RKA RCSB RCSB000694 WWPDB D_1000000694 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RKA _pdbx_database_status.recvd_initial_deposition_date 1999-03-22 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sigrell, J.A.' 1 'Cameron, A.D.' 2 'Mowbray, S.L.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Induced fit on sugar binding activates ribokinase.' J.Mol.Biol. 290 1009 1018 1999 JMOBAK UK 0022-2836 0070 ? 10438599 10.1006/jmbi.1999.2938 1 ;Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures. ; Structure 6 183 193 1998 STRUE6 UK 0969-2126 2005 ? 9519409 '10.1016/s0969-2126(98)00020-3' 2 'Purification, characterization, and crystallization of Escherichia coli ribokinase.' 'Protein Sci.' 6 2474 2476 1997 PRCIEI US 0961-8368 0795 ? 9385653 10.1002/pro.5560061124 3 'Ribokinase from Escherichia coli K12. Nucleotide sequence and overexpression of the rbsK gene and purification of ribokinase.' J.Biol.Chem. 261 7663 7668 1986 JBCHA3 US 0021-9258 0071 ? 3011794 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sigrell, J.A.' 1 ? primary 'Cameron, A.D.' 2 ? primary 'Mowbray, S.L.' 3 ? 1 'Sigrell, J.A.' 4 ? 1 'Cameron, A.D.' 5 ? 1 'Jones, T.A.' 6 ? 1 'Mowbray, S.L.' 7 ? 2 'Sigrell, J.A.' 8 ? 2 'Cameron, A.D.' 9 ? 2 'Jones, T.A.' 10 ? 2 'Mowbray, S.L.' 11 ? 3 'Hope, J.N.' 12 ? 3 'Bell, A.W.' 13 ? 3 'Hermodson, M.A.' 14 ? 3 'Groarke, J.M.' 15 ? # _cell.entry_id 1RKA _cell.length_a 61.970 _cell.length_b 61.970 _cell.length_c 127.834 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKA _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (RIBOKINASE)' 32320.393 1 2.7.1.15 ? ? ? 2 water nat water 18.015 123 ? ? ? ? # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.2.7.1.15 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATD NIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRV PGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR ; _entity_poly.pdbx_seq_one_letter_code_can ;MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATD NIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRV PGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ASN n 1 4 ALA n 1 5 GLY n 1 6 SER n 1 7 LEU n 1 8 VAL n 1 9 VAL n 1 10 LEU n 1 11 GLY n 1 12 SER n 1 13 ILE n 1 14 ASN n 1 15 ALA n 1 16 ASP n 1 17 HIS n 1 18 ILE n 1 19 LEU n 1 20 ASN n 1 21 LEU n 1 22 GLN n 1 23 SER n 1 24 PHE n 1 25 PRO n 1 26 THR n 1 27 PRO n 1 28 GLY n 1 29 GLU n 1 30 THR n 1 31 VAL n 1 32 THR n 1 33 GLY n 1 34 ASN n 1 35 HIS n 1 36 TYR n 1 37 GLN n 1 38 VAL n 1 39 ALA n 1 40 PHE n 1 41 GLY n 1 42 GLY n 1 43 LYS n 1 44 GLY n 1 45 ALA n 1 46 ASN n 1 47 GLN n 1 48 ALA n 1 49 VAL n 1 50 ALA n 1 51 ALA n 1 52 GLY n 1 53 ARG n 1 54 SER n 1 55 GLY n 1 56 ALA n 1 57 ASN n 1 58 ILE n 1 59 ALA n 1 60 PHE n 1 61 ILE n 1 62 ALA n 1 63 CYS n 1 64 THR n 1 65 GLY n 1 66 ASP n 1 67 ASP n 1 68 SER n 1 69 ILE n 1 70 GLY n 1 71 GLU n 1 72 SER n 1 73 VAL n 1 74 ARG n 1 75 GLN n 1 76 GLN n 1 77 LEU n 1 78 ALA n 1 79 THR n 1 80 ASP n 1 81 ASN n 1 82 ILE n 1 83 ASP n 1 84 ILE n 1 85 THR n 1 86 PRO n 1 87 VAL n 1 88 SER n 1 89 VAL n 1 90 ILE n 1 91 LYS n 1 92 GLY n 1 93 GLU n 1 94 SER n 1 95 THR n 1 96 GLY n 1 97 VAL n 1 98 ALA n 1 99 LEU n 1 100 ILE n 1 101 PHE n 1 102 VAL n 1 103 ASN n 1 104 GLY n 1 105 GLU n 1 106 GLY n 1 107 GLU n 1 108 ASN n 1 109 VAL n 1 110 ILE n 1 111 GLY n 1 112 ILE n 1 113 HIS n 1 114 ALA n 1 115 GLY n 1 116 ALA n 1 117 ASN n 1 118 ALA n 1 119 ALA n 1 120 LEU n 1 121 SER n 1 122 PRO n 1 123 ALA n 1 124 LEU n 1 125 VAL n 1 126 GLU n 1 127 ALA n 1 128 GLN n 1 129 ARG n 1 130 GLU n 1 131 ARG n 1 132 ILE n 1 133 ALA n 1 134 ASN n 1 135 ALA n 1 136 SER n 1 137 ALA n 1 138 LEU n 1 139 LEU n 1 140 MET n 1 141 GLN n 1 142 LEU n 1 143 GLU n 1 144 SER n 1 145 PRO n 1 146 LEU n 1 147 GLU n 1 148 SER n 1 149 VAL n 1 150 MET n 1 151 ALA n 1 152 ALA n 1 153 ALA n 1 154 LYS n 1 155 ILE n 1 156 ALA n 1 157 HIS n 1 158 GLN n 1 159 ASN n 1 160 LYS n 1 161 THR n 1 162 ILE n 1 163 VAL n 1 164 ALA n 1 165 LEU n 1 166 ASN n 1 167 PRO n 1 168 ALA n 1 169 PRO n 1 170 ALA n 1 171 ARG n 1 172 GLU n 1 173 LEU n 1 174 PRO n 1 175 ASP n 1 176 GLU n 1 177 LEU n 1 178 LEU n 1 179 ALA n 1 180 LEU n 1 181 VAL n 1 182 ASP n 1 183 ILE n 1 184 ILE n 1 185 THR n 1 186 PRO n 1 187 ASN n 1 188 GLU n 1 189 THR n 1 190 GLU n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 THR n 1 196 GLY n 1 197 ILE n 1 198 ARG n 1 199 VAL n 1 200 GLU n 1 201 ASN n 1 202 ASP n 1 203 GLU n 1 204 ASP n 1 205 ALA n 1 206 ALA n 1 207 LYS n 1 208 ALA n 1 209 ALA n 1 210 GLN n 1 211 VAL n 1 212 LEU n 1 213 HIS n 1 214 GLU n 1 215 LYS n 1 216 GLY n 1 217 ILE n 1 218 ARG n 1 219 THR n 1 220 VAL n 1 221 LEU n 1 222 ILE n 1 223 THR n 1 224 LEU n 1 225 GLY n 1 226 SER n 1 227 ARG n 1 228 GLY n 1 229 VAL n 1 230 TRP n 1 231 ALA n 1 232 SER n 1 233 VAL n 1 234 ASN n 1 235 GLY n 1 236 GLU n 1 237 GLY n 1 238 GLN n 1 239 ARG n 1 240 VAL n 1 241 PRO n 1 242 GLY n 1 243 PHE n 1 244 ARG n 1 245 VAL n 1 246 GLN n 1 247 ALA n 1 248 VAL n 1 249 ASP n 1 250 THR n 1 251 ILE n 1 252 ALA n 1 253 ALA n 1 254 GLY n 1 255 ASP n 1 256 THR n 1 257 PHE n 1 258 ASN n 1 259 GLY n 1 260 ALA n 1 261 LEU n 1 262 ILE n 1 263 THR n 1 264 ALA n 1 265 LEU n 1 266 LEU n 1 267 GLU n 1 268 GLU n 1 269 LYS n 1 270 PRO n 1 271 LEU n 1 272 PRO n 1 273 GLU n 1 274 ALA n 1 275 ILE n 1 276 ARG n 1 277 PHE n 1 278 ALA n 1 279 HIS n 1 280 ALA n 1 281 ALA n 1 282 ALA n 1 283 ALA n 1 284 ILE n 1 285 ALA n 1 286 VAL n 1 287 THR n 1 288 ARG n 1 289 LYS n 1 290 GLY n 1 291 ALA n 1 292 GLN n 1 293 PRO n 1 294 SER n 1 295 VAL n 1 296 PRO n 1 297 TRP n 1 298 ARG n 1 299 GLU n 1 300 GLU n 1 301 ILE n 1 302 ASP n 1 303 ALA n 1 304 PHE n 1 305 LEU n 1 306 ASP n 1 307 ARG n 1 308 GLN n 1 309 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene RBSK _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MRI240 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOPLASM _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain MRI240 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PJGK10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'THE RBSK GENE WAS CLONED BEHIND AURCE 11 TRP-PROMOTER, FORMING THE PLASMID PJGK10' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBSK_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P0A9J6 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RKA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 309 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A9J6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 309 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 309 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RKA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.1 _exptl_crystal.density_percent_sol 40.2 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.8 _exptl_crystal_grow.pdbx_details ;CRYSTALS WERE GROWN IN 22-33% PEG 2000, MONO-METHYLETHER AS PRECIPITANT AND BUFFERED TO PH 4.8 WITH 0.1 M NA ACETATE. CRYO-PROTECTANT: MOTHER LIQUID ALSO CONTAINING 15% ETHYLENEGLYCOL. SOAK-TIME: 2-3 MINUTES. ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-05-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9960 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I711' _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I711 _diffrn_source.pdbx_wavelength 0.9960 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1RKA _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.3 _reflns.number_obs 12644 _reflns.number_all ? _reflns.percent_possible_obs 96.4 _reflns.pdbx_Rmerge_I_obs 0.0560000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.6 _reflns.B_iso_Wilson_estimate 32. _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 87.5 _reflns_shell.Rmerge_I_obs 0.2350000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.7 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1RKA _refine.ls_number_reflns_obs 12644 _refine.ls_number_reflns_all 12644 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2100000 _refine.ls_R_factor_R_free 0.2530000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 619 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27. _refine.aniso_B[1][1] -2.84 _refine.aniso_B[2][2] -2.84 _refine.aniso_B[3][3] 5.685 _refine.aniso_B[1][2] -1.66 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'EXPONENTIAL SCALING' _refine.solvent_model_param_ksol 0.33 _refine.solvent_model_param_bsol 45.9 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model '1RKD: RESIDUES 4-9, 44-93, 123-241 AND 254-309.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MLF USING AMPLITUDES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1RKA _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.33 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2236 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 2359 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 23.1 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.1 1.5 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 1.7 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 1.8 2.0 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 2.5 2.5 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1RKA _struct.title 'THE APO FORM OF E. COLI RIBOKINASE' _struct.pdbx_descriptor RIBOKINASE _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RKA _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'CARBOHYDRATE KINASE, RIBOSE, NUCLEOTIDE BINDING, TRANSFERASE, INDUCED FIT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 LYS A 43 ? SER A 54 ? LYS A 43 SER A 54 1 ? 12 HELX_P HELX_P2 H2 SER A 68 ? THR A 79 ? SER A 68 THR A 79 1 ? 12 HELX_P HELX_P3 H3 PRO A 122 ? ASN A 134 ? PRO A 122 ASN A 134 1 ? 13 HELX_P HELX_P4 H4 LEU A 146 ? ASN A 159 ? LEU A 146 ASN A 159 1 ? 14 HELX_P HELX_P5 H5 ASP A 175 ? LEU A 180 ? ASP A 175 LEU A 180 1 ? 6 HELX_P HELX_P6 H6 GLU A 188 ? LEU A 194 ? GLU A 188 LEU A 194 1 ? 7 HELX_P HELX_P7 H7 GLU A 203 ? LYS A 215 ? GLU A 203 LYS A 215 1 ? 13 HELX_P HELX_P8 H8 ALA A 253 ? GLU A 267 ? ALA A 253 GLU A 267 1 ? 15 HELX_P HELX_P9 H9 LEU A 271 ? THR A 287 ? LEU A 271 THR A 287 1 ? 17 HELX_P HELX_P10 H10 ARG A 298 ? ARG A 307 ? ARG A 298 ARG A 307 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 168 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 168 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 169 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 169 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 9 ? S2 ? 4 ? # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 VAL A 87 ? LYS A 91 ? VAL A 87 LYS A 91 S1 2 ILE A 58 ? GLY A 65 ? ILE A 58 GLY A 65 S1 3 SER A 6 ? LEU A 10 ? SER A 6 LEU A 10 S1 4 ALA A 137 ? GLN A 141 ? ALA A 137 GLN A 141 S1 5 ILE A 162 ? ASN A 166 ? ILE A 162 ASN A 166 S1 6 ILE A 183 ? ASN A 187 ? ILE A 183 ASN A 187 S1 7 THR A 219 ? LEU A 224 ? THR A 219 LEU A 224 S1 8 TRP A 230 ? VAL A 233 ? TRP A 230 VAL A 233 S1 9 GLU A 236 ? GLY A 242 ? GLU A 236 GLY A 242 S2 1 GLU A 29 ? VAL A 38 ? GLU A 29 VAL A 38 S2 2 SER A 12 ? LEU A 21 ? SER A 12 LEU A 21 S2 3 GLY A 96 ? ASN A 103 ? GLY A 96 ASN A 103 S2 4 GLU A 107 ? ALA A 114 ? GLU A 107 ALA A 114 # _database_PDB_matrix.entry_id 1RKA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RKA _atom_sites.fract_transf_matrix[1][1] 0.016137 _atom_sites.fract_transf_matrix[1][2] 0.009317 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018633 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLN 2 2 ? ? ? A . n A 1 3 ASN 3 3 ? ? ? A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 HIS 113 113 113 HIS HIS A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 MET 140 140 140 MET MET A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 MET 150 150 150 MET MET A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 HIS 157 157 157 HIS HIS A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 THR 161 161 161 THR THR A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 GLU 172 172 172 GLU GLU A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 PRO 186 186 186 PRO PRO A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 GLU 200 200 200 GLU GLU A . n A 1 201 ASN 201 201 201 ASN ASN A . n A 1 202 ASP 202 202 202 ASP ASP A . n A 1 203 GLU 203 203 203 GLU GLU A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 HIS 213 213 213 HIS HIS A . n A 1 214 GLU 214 214 214 GLU GLU A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 ILE 222 222 222 ILE ILE A . n A 1 223 THR 223 223 223 THR THR A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 SER 226 226 226 SER SER A . n A 1 227 ARG 227 227 227 ARG ARG A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 TRP 230 230 230 TRP TRP A . n A 1 231 ALA 231 231 231 ALA ALA A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 GLN 238 238 238 GLN GLN A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 PHE 243 243 243 PHE PHE A . n A 1 244 ARG 244 244 244 ARG ARG A . n A 1 245 VAL 245 245 245 VAL VAL A . n A 1 246 GLN 246 246 246 GLN GLN A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 VAL 248 248 248 VAL VAL A . n A 1 249 ASP 249 249 249 ASP ASP A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 ASP 255 255 255 ASP ASP A . n A 1 256 THR 256 256 256 THR THR A . n A 1 257 PHE 257 257 257 PHE PHE A . n A 1 258 ASN 258 258 258 ASN ASN A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 ILE 262 262 262 ILE ILE A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 GLU 267 267 267 GLU GLU A . n A 1 268 GLU 268 268 268 GLU GLU A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 PRO 270 270 270 PRO PRO A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 PRO 272 272 272 PRO PRO A . n A 1 273 GLU 273 273 273 GLU GLU A . n A 1 274 ALA 274 274 274 ALA ALA A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 ARG 276 276 276 ARG ARG A . n A 1 277 PHE 277 277 277 PHE PHE A . n A 1 278 ALA 278 278 278 ALA ALA A . n A 1 279 HIS 279 279 279 HIS HIS A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 ALA 282 282 282 ALA ALA A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 ALA 285 285 285 ALA ALA A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 THR 287 287 287 THR THR A . n A 1 288 ARG 288 288 288 ARG ARG A . n A 1 289 LYS 289 289 289 LYS LYS A . n A 1 290 GLY 290 290 290 GLY GLY A . n A 1 291 ALA 291 291 291 ALA ALA A . n A 1 292 GLN 292 292 292 GLN GLN A . n A 1 293 PRO 293 293 293 PRO PRO A . n A 1 294 SER 294 294 294 SER SER A . n A 1 295 VAL 295 295 295 VAL VAL A . n A 1 296 PRO 296 296 296 PRO PRO A . n A 1 297 TRP 297 297 297 TRP TRP A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLU 299 299 299 GLU GLU A . n A 1 300 GLU 300 300 300 GLU GLU A . n A 1 301 ILE 301 301 301 ILE ILE A . n A 1 302 ASP 302 302 302 ASP ASP A . n A 1 303 ALA 303 303 303 ALA ALA A . n A 1 304 PHE 304 304 304 PHE PHE A . n A 1 305 LEU 305 305 305 LEU LEU A . n A 1 306 ASP 306 306 306 ASP ASP A . n A 1 307 ARG 307 307 307 ARG ARG A . n A 1 308 GLN 308 308 308 GLN GLN A . n A 1 309 ARG 309 309 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 314 314 HOH HOH A . B 2 HOH 2 315 315 HOH HOH A . B 2 HOH 3 316 316 HOH HOH A . B 2 HOH 4 317 317 HOH HOH A . B 2 HOH 5 318 318 HOH HOH A . B 2 HOH 6 319 319 HOH HOH A . B 2 HOH 7 320 320 HOH HOH A . B 2 HOH 8 321 321 HOH HOH A . B 2 HOH 9 322 322 HOH HOH A . B 2 HOH 10 323 323 HOH HOH A . B 2 HOH 11 324 324 HOH HOH A . B 2 HOH 12 325 325 HOH HOH A . B 2 HOH 13 326 326 HOH HOH A . B 2 HOH 14 327 327 HOH HOH A . B 2 HOH 15 328 328 HOH HOH A . B 2 HOH 16 329 329 HOH HOH A . B 2 HOH 17 330 330 HOH HOH A . B 2 HOH 18 331 331 HOH HOH A . B 2 HOH 19 332 332 HOH HOH A . B 2 HOH 20 333 333 HOH HOH A . B 2 HOH 21 334 334 HOH HOH A . B 2 HOH 22 335 335 HOH HOH A . B 2 HOH 23 336 336 HOH HOH A . B 2 HOH 24 337 337 HOH HOH A . B 2 HOH 25 338 338 HOH HOH A . B 2 HOH 26 339 339 HOH HOH A . B 2 HOH 27 340 340 HOH HOH A . B 2 HOH 28 341 341 HOH HOH A . B 2 HOH 29 342 342 HOH HOH A . B 2 HOH 30 343 343 HOH HOH A . B 2 HOH 31 344 344 HOH HOH A . B 2 HOH 32 345 345 HOH HOH A . B 2 HOH 33 346 346 HOH HOH A . B 2 HOH 34 347 347 HOH HOH A . B 2 HOH 35 348 348 HOH HOH A . B 2 HOH 36 349 349 HOH HOH A . B 2 HOH 37 350 350 HOH HOH A . B 2 HOH 38 351 351 HOH HOH A . B 2 HOH 39 352 352 HOH HOH A . B 2 HOH 40 353 353 HOH HOH A . B 2 HOH 41 354 354 HOH HOH A . B 2 HOH 42 355 355 HOH HOH A . B 2 HOH 43 356 356 HOH HOH A . B 2 HOH 44 357 357 HOH HOH A . B 2 HOH 45 358 358 HOH HOH A . B 2 HOH 46 359 359 HOH HOH A . B 2 HOH 47 360 360 HOH HOH A . B 2 HOH 48 361 361 HOH HOH A . B 2 HOH 49 362 362 HOH HOH A . B 2 HOH 50 363 363 HOH HOH A . B 2 HOH 51 364 364 HOH HOH A . B 2 HOH 52 365 365 HOH HOH A . B 2 HOH 53 366 366 HOH HOH A . B 2 HOH 54 367 367 HOH HOH A . B 2 HOH 55 368 368 HOH HOH A . B 2 HOH 56 369 369 HOH HOH A . B 2 HOH 57 370 370 HOH HOH A . B 2 HOH 58 371 371 HOH HOH A . B 2 HOH 59 372 372 HOH HOH A . B 2 HOH 60 373 373 HOH HOH A . B 2 HOH 61 374 374 HOH HOH A . B 2 HOH 62 375 375 HOH HOH A . B 2 HOH 63 376 376 HOH HOH A . B 2 HOH 64 377 377 HOH HOH A . B 2 HOH 65 378 378 HOH HOH A . B 2 HOH 66 379 379 HOH HOH A . B 2 HOH 67 380 380 HOH HOH A . B 2 HOH 68 381 381 HOH HOH A . B 2 HOH 69 382 382 HOH HOH A . B 2 HOH 70 383 383 HOH HOH A . B 2 HOH 71 384 384 HOH HOH A . B 2 HOH 72 385 385 HOH HOH A . B 2 HOH 73 386 386 HOH HOH A . B 2 HOH 74 387 387 HOH HOH A . B 2 HOH 75 388 388 HOH HOH A . B 2 HOH 76 389 389 HOH HOH A . B 2 HOH 77 390 390 HOH HOH A . B 2 HOH 78 391 391 HOH HOH A . B 2 HOH 79 392 392 HOH HOH A . B 2 HOH 80 393 393 HOH HOH A . B 2 HOH 81 394 394 HOH HOH A . B 2 HOH 82 395 395 HOH HOH A . B 2 HOH 83 396 396 HOH HOH A . B 2 HOH 84 397 397 HOH HOH A . B 2 HOH 85 398 398 HOH HOH A . B 2 HOH 86 399 399 HOH HOH A . B 2 HOH 87 400 400 HOH HOH A . B 2 HOH 88 401 401 HOH HOH A . B 2 HOH 89 402 402 HOH HOH A . B 2 HOH 90 403 403 HOH HOH A . B 2 HOH 91 404 404 HOH HOH A . B 2 HOH 92 405 405 HOH HOH A . B 2 HOH 93 406 406 HOH HOH A . B 2 HOH 94 407 407 HOH HOH A . B 2 HOH 95 408 408 HOH HOH A . B 2 HOH 96 409 409 HOH HOH A . B 2 HOH 97 410 410 HOH HOH A . B 2 HOH 98 411 411 HOH HOH A . B 2 HOH 99 412 412 HOH HOH A . B 2 HOH 100 413 413 HOH HOH A . B 2 HOH 101 414 414 HOH HOH A . B 2 HOH 102 415 415 HOH HOH A . B 2 HOH 103 416 416 HOH HOH A . B 2 HOH 104 417 417 HOH HOH A . B 2 HOH 105 418 418 HOH HOH A . B 2 HOH 106 419 419 HOH HOH A . B 2 HOH 107 420 420 HOH HOH A . B 2 HOH 108 421 421 HOH HOH A . B 2 HOH 109 422 422 HOH HOH A . B 2 HOH 110 423 423 HOH HOH A . B 2 HOH 111 424 424 HOH HOH A . B 2 HOH 112 425 425 HOH HOH A . B 2 HOH 113 426 426 HOH HOH A . B 2 HOH 114 427 427 HOH HOH A . B 2 HOH 115 428 428 HOH HOH A . B 2 HOH 116 429 429 HOH HOH A . B 2 HOH 117 430 430 HOH HOH A . B 2 HOH 118 431 431 HOH HOH A . B 2 HOH 119 432 432 HOH HOH A . B 2 HOH 120 433 433 HOH HOH A . B 2 HOH 121 434 434 HOH HOH A . B 2 HOH 122 435 435 HOH HOH A . B 2 HOH 123 436 436 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2170 ? 1 MORE -19 ? 1 'SSA (A^2)' 24340 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-08-31 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2019-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 5 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_citation.page_last' 3 5 'Structure model' '_citation.pdbx_database_id_DOI' 4 5 'Structure model' '_citation.pdbx_database_id_PubMed' 5 5 'Structure model' '_citation.title' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 0.3 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 406 ? ? 1_555 O A HOH 406 ? ? 4_555 1.77 2 1 CG A GLU 299 ? ? 1_555 O A HOH 426 ? ? 4_565 1.95 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 66 ? ? -99.60 32.21 2 1 GLN A 141 ? ? -128.92 -159.28 3 1 PRO A 167 ? ? -67.58 58.54 4 1 ARG A 171 ? ? 178.56 151.09 5 1 ASP A 249 ? ? -161.77 106.60 6 1 ALA A 291 ? ? -70.36 -87.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLN 2 ? A GLN 2 3 1 Y 1 A ASN 3 ? A ASN 3 4 1 Y 1 A ARG 309 ? A ARG 309 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #