data_1RKB # _entry.id 1RKB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RKB RCSB RCSB020831 WWPDB D_1000020831 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RKB _pdbx_database_status.recvd_initial_deposition_date 2003-11-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, H.' 1 'Liang, Y.' 2 'Bennett, M.' 3 'Su, X.D.' 4 # _citation.id primary _citation.title 'The crystal structure of human adenylate kinase 6: An adenylate kinase localized to the cell nucleus' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 303 _citation.page_last 308 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15630091 _citation.pdbx_database_id_DOI 10.1073/pnas.0407459102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ren, H.' 1 primary 'Wang, L.' 2 primary 'Bennett, M.' 3 primary 'Liang, Y.' 4 primary 'Zheng, X.' 5 primary 'Lu, F.' 6 primary 'Li, L.' 7 primary 'Nan, J.' 8 primary 'Luo, M.' 9 primary 'Eriksson, S.' 10 primary 'Zhang, C.' 11 primary 'Su, X.D.' 12 # _cell.entry_id 1RKB _cell.length_a 99.555 _cell.length_b 99.555 _cell.length_c 57.191 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKB _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein AD-004' 20195.561 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn 'LITHIUM ION' 6.941 3 ? ? ? ? 4 water nat water 18.015 161 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein CGI-137' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYH GCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQI LKWIEQWIKDHNS ; _entity_poly.pdbx_seq_one_letter_code_can ;LMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYH GCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQI LKWIEQWIKDHNS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 MET n 1 3 LEU n 1 4 LEU n 1 5 PRO n 1 6 ASN n 1 7 ILE n 1 8 LEU n 1 9 LEU n 1 10 THR n 1 11 GLY n 1 12 THR n 1 13 PRO n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 THR n 1 19 THR n 1 20 LEU n 1 21 GLY n 1 22 LYS n 1 23 GLU n 1 24 LEU n 1 25 ALA n 1 26 SER n 1 27 LYS n 1 28 SER n 1 29 GLY n 1 30 LEU n 1 31 LYS n 1 32 TYR n 1 33 ILE n 1 34 ASN n 1 35 VAL n 1 36 GLY n 1 37 ASP n 1 38 LEU n 1 39 ALA n 1 40 ARG n 1 41 GLU n 1 42 GLU n 1 43 GLN n 1 44 LEU n 1 45 TYR n 1 46 ASP n 1 47 GLY n 1 48 TYR n 1 49 ASP n 1 50 GLU n 1 51 GLU n 1 52 TYR n 1 53 ASP n 1 54 CYS n 1 55 PRO n 1 56 ILE n 1 57 LEU n 1 58 ASP n 1 59 GLU n 1 60 ASP n 1 61 ARG n 1 62 VAL n 1 63 VAL n 1 64 ASP n 1 65 GLU n 1 66 LEU n 1 67 ASP n 1 68 ASN n 1 69 GLN n 1 70 MET n 1 71 ARG n 1 72 GLU n 1 73 GLY n 1 74 GLY n 1 75 VAL n 1 76 ILE n 1 77 VAL n 1 78 ASP n 1 79 TYR n 1 80 HIS n 1 81 GLY n 1 82 CYS n 1 83 ASP n 1 84 PHE n 1 85 PHE n 1 86 PRO n 1 87 GLU n 1 88 ARG n 1 89 TRP n 1 90 PHE n 1 91 HIS n 1 92 ILE n 1 93 VAL n 1 94 PHE n 1 95 VAL n 1 96 LEU n 1 97 ARG n 1 98 THR n 1 99 ASP n 1 100 THR n 1 101 ASN n 1 102 VAL n 1 103 LEU n 1 104 TYR n 1 105 GLU n 1 106 ARG n 1 107 LEU n 1 108 GLU n 1 109 THR n 1 110 ARG n 1 111 GLY n 1 112 TYR n 1 113 ASN n 1 114 GLU n 1 115 LYS n 1 116 LYS n 1 117 LEU n 1 118 THR n 1 119 ASP n 1 120 ASN n 1 121 ILE n 1 122 GLN n 1 123 CYS n 1 124 GLU n 1 125 ILE n 1 126 PHE n 1 127 GLN n 1 128 VAL n 1 129 LEU n 1 130 TYR n 1 131 GLU n 1 132 GLU n 1 133 ALA n 1 134 THR n 1 135 ALA n 1 136 SER n 1 137 TYR n 1 138 LYS n 1 139 GLU n 1 140 GLU n 1 141 ILE n 1 142 VAL n 1 143 HIS n 1 144 GLN n 1 145 LEU n 1 146 PRO n 1 147 SER n 1 148 ASN n 1 149 LYS n 1 150 PRO n 1 151 GLU n 1 152 GLU n 1 153 LEU n 1 154 GLU n 1 155 ASN n 1 156 ASN n 1 157 VAL n 1 158 ASP n 1 159 GLN n 1 160 ILE n 1 161 LEU n 1 162 LYS n 1 163 TRP n 1 164 ILE n 1 165 GLU n 1 166 GLN n 1 167 TRP n 1 168 ILE n 1 169 LYS n 1 170 ASP n 1 171 HIS n 1 172 ASN n 1 173 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue 'adrenal gland' _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21G-DEST _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KAD6_HUMAN _struct_ref.pdbx_db_accession Q9Y3D8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHG CDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQIL KWIEQWIKDHNS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RKB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 173 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y3D8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 172 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1RKB _struct_ref_seq_dif.mon_id LEU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9Y3D8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'CLONING ARTIFACT' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LI non-polymer . 'LITHIUM ION' ? 'Li 1' 6.941 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1RKB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 68.44 _exptl_crystal.description ? _exptl_crystal.density_Matthews 3.93 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'HEPES-Na, Lithium Sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2003-03-03 _diffrn_detector.details MONTEL # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MONTEL _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1RKB _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 57.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 21969 _reflns.number_all 22042 _reflns.percent_possible_obs 99.67 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0337 _reflns.pdbx_netI_over_sigmaI 15.15 _reflns.B_iso_Wilson_estimate 18.4 _reflns.pdbx_redundancy 5.15 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.04 _reflns_shell.percent_possible_all 99.38 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.2065 _reflns_shell.meanI_over_sigI_obs 1.73 _reflns_shell.pdbx_redundancy 2.37 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1125 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1RKB _refine.ls_number_reflns_obs 21924 _refine.ls_number_reflns_all 22005 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1294034.22 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.78 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.203 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.218 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1071 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.0 _refine.aniso_B[1][1] -1.03 _refine.aniso_B[2][2] -1.03 _refine.aniso_B[3][3] 2.06 _refine.aniso_B[1][2] 1.90 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.369811 _refine.solvent_model_param_bsol 47.724 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1RKB _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.27 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1426 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 1615 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 49.78 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.77 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.56 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.41 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.31 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.56 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 3416 _refine_ls_shell.R_factor_R_work 0.233 _refine_ls_shell.percent_reflns_obs 98.4 _refine_ls_shell.R_factor_R_free 0.256 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 174 _refine_ls_shell.number_reflns_obs 3590 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1RKB _struct.title 'The structure of adrenal gland protein AD-004' _struct.pdbx_descriptor 'Protein CGI-137' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RKB _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'five-stranded parallel beta-sheet flanked by 7 alpha-helices, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? GLY A 29 ? GLY A 15 GLY A 28 1 ? 14 HELX_P HELX_P2 2 VAL A 35 ? GLU A 42 ? VAL A 34 GLU A 41 1 ? 8 HELX_P HELX_P3 3 ASP A 58 ? GLY A 73 ? ASP A 57 GLY A 72 1 ? 16 HELX_P HELX_P4 4 PRO A 86 ? PHE A 90 ? PRO A 85 PHE A 89 5 ? 5 HELX_P HELX_P5 5 ASP A 99 ? ARG A 110 ? ASP A 98 ARG A 109 1 ? 12 HELX_P HELX_P6 6 ASN A 113 ? PHE A 126 ? ASN A 112 PHE A 125 1 ? 14 HELX_P HELX_P7 7 GLN A 127 ? TYR A 137 ? GLN A 126 TYR A 136 1 ? 11 HELX_P HELX_P8 8 LYS A 138 ? GLU A 140 ? LYS A 137 GLU A 139 5 ? 3 HELX_P HELX_P9 9 LYS A 149 ? HIS A 171 ? LYS A 148 HIS A 170 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? G LI . LI ? ? ? 1_555 C SO4 . O2 ? ? A LI 301 A SO4 202 1_555 ? ? ? ? ? ? ? 2.176 ? metalc2 metalc ? ? H LI . LI ? ? ? 1_555 A GLU 140 N ? ? A LI 302 A GLU 139 1_555 ? ? ? ? ? ? ? 2.951 ? metalc3 metalc ? ? H LI . LI ? ? ? 1_555 A GLU 140 OE2 ? ? A LI 302 A GLU 139 1_555 ? ? ? ? ? ? ? 2.274 ? metalc4 metalc ? ? H LI . LI ? ? ? 1_555 F SO4 . O4 ? ? A LI 302 A SO4 205 1_555 ? ? ? ? ? ? ? 2.847 ? metalc5 metalc ? ? I LI . LI ? ? ? 1_555 A GLU 59 OE1 ? ? A LI 303 A GLU 58 1_555 ? ? ? ? ? ? ? 2.134 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 31 ? ASN A 34 ? LYS A 30 ASN A 33 A 2 VAL A 75 ? ASP A 78 ? VAL A 74 ASP A 77 A 3 ILE A 7 ? THR A 10 ? ILE A 6 THR A 9 A 4 ILE A 92 ? ARG A 97 ? ILE A 91 ARG A 96 A 5 VAL A 142 ? PRO A 146 ? VAL A 141 PRO A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 31 ? N LYS A 30 O ILE A 76 ? O ILE A 75 A 2 3 O VAL A 77 ? O VAL A 76 N ILE A 7 ? N ILE A 6 A 3 4 N LEU A 8 ? N LEU A 7 O PHE A 94 ? O PHE A 93 A 4 5 N ARG A 97 ? N ARG A 96 O LEU A 145 ? O LEU A 144 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 204' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 205' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE LI A 301' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE LI A 302' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE LI A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 PRO A 13 ? PRO A 12 . ? 1_555 ? 2 AC1 10 GLY A 14 ? GLY A 13 . ? 1_555 ? 3 AC1 10 VAL A 15 ? VAL A 14 . ? 1_555 ? 4 AC1 10 GLY A 16 ? GLY A 15 . ? 1_555 ? 5 AC1 10 LYS A 17 ? LYS A 16 . ? 1_555 ? 6 AC1 10 THR A 18 ? THR A 17 . ? 1_555 ? 7 AC1 10 ARG A 110 ? ARG A 109 . ? 1_555 ? 8 AC1 10 HOH J . ? HOH A 420 . ? 1_555 ? 9 AC1 10 HOH J . ? HOH A 468 . ? 1_555 ? 10 AC1 10 HOH J . ? HOH A 498 . ? 1_555 ? 11 AC2 6 TYR A 130 ? TYR A 129 . ? 1_555 ? 12 AC2 6 HIS A 143 ? HIS A 142 . ? 1_555 ? 13 AC2 6 GLN A 144 ? GLN A 143 . ? 1_555 ? 14 AC2 6 LI G . ? LI A 301 . ? 1_555 ? 15 AC2 6 HOH J . ? HOH A 401 . ? 1_555 ? 16 AC2 6 HOH J . ? HOH A 414 . ? 1_555 ? 17 AC3 6 ARG A 61 ? ARG A 60 . ? 4_545 ? 18 AC3 6 HIS A 171 ? HIS A 170 . ? 1_555 ? 19 AC3 6 HOH J . ? HOH A 404 . ? 1_555 ? 20 AC3 6 HOH J . ? HOH A 452 . ? 1_555 ? 21 AC3 6 HOH J . ? HOH A 457 . ? 1_555 ? 22 AC3 6 HOH J . ? HOH A 515 . ? 4_545 ? 23 AC4 6 GLN A 127 ? GLN A 126 . ? 6_445 ? 24 AC4 6 GLU A 165 ? GLU A 164 . ? 1_555 ? 25 AC4 6 GLN A 166 ? GLN A 165 . ? 1_555 ? 26 AC4 6 LYS A 169 ? LYS A 168 . ? 1_555 ? 27 AC4 6 HOH J . ? HOH A 419 . ? 1_555 ? 28 AC4 6 HOH J . ? HOH A 510 . ? 1_555 ? 29 AC5 5 LYS A 138 ? LYS A 137 . ? 1_555 ? 30 AC5 5 GLU A 139 ? GLU A 138 . ? 1_555 ? 31 AC5 5 GLU A 140 ? GLU A 139 . ? 1_555 ? 32 AC5 5 LI H . ? LI A 302 . ? 1_555 ? 33 AC5 5 HOH J . ? HOH A 423 . ? 1_555 ? 34 AC6 1 SO4 C . ? SO4 A 202 . ? 1_555 ? 35 AC7 3 GLU A 139 ? GLU A 138 . ? 1_555 ? 36 AC7 3 GLU A 140 ? GLU A 139 . ? 1_555 ? 37 AC7 3 SO4 F . ? SO4 A 205 . ? 1_555 ? 38 AC8 2 GLU A 59 ? GLU A 58 . ? 1_555 ? 39 AC8 2 PHE A 84 ? PHE A 83 . ? 1_555 ? # _database_PDB_matrix.entry_id 1RKB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RKB _atom_sites.fract_transf_matrix[1][1] 0.010045 _atom_sites.fract_transf_matrix[1][2] 0.005799 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011599 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017485 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C LI N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 0 0 LEU LEU A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 THR 12 11 11 THR THR A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 LYS 27 26 26 LYS LYS A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 ASN 34 33 33 ASN ASN A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 TYR 48 47 47 TYR TYR A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 CYS 54 53 53 CYS CYS A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 ARG 61 60 60 ARG ARG A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 ASP 67 66 66 ASP ASP A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 GLN 69 68 68 GLN GLN A . n A 1 70 MET 70 69 69 MET MET A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 HIS 80 79 79 HIS HIS A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 CYS 82 81 81 CYS CYS A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 PHE 85 84 84 PHE PHE A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 TRP 89 88 88 TRP TRP A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 PHE 94 93 93 PHE PHE A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 ARG 97 96 96 ARG ARG A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 ASP 99 98 98 ASP ASP A . n A 1 100 THR 100 99 99 THR THR A . n A 1 101 ASN 101 100 100 ASN ASN A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 TYR 104 103 103 TYR TYR A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 TYR 112 111 111 TYR TYR A . n A 1 113 ASN 113 112 112 ASN ASN A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 ASN 120 119 119 ASN ASN A . n A 1 121 ILE 121 120 120 ILE ILE A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 CYS 123 122 122 CYS CYS A . n A 1 124 GLU 124 123 123 GLU GLU A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 PHE 126 125 125 PHE PHE A . n A 1 127 GLN 127 126 126 GLN GLN A . n A 1 128 VAL 128 127 127 VAL VAL A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 TYR 130 129 129 TYR TYR A . n A 1 131 GLU 131 130 130 GLU GLU A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 ALA 133 132 132 ALA ALA A . n A 1 134 THR 134 133 133 THR THR A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 TYR 137 136 136 TYR TYR A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 ILE 141 140 140 ILE ILE A . n A 1 142 VAL 142 141 141 VAL VAL A . n A 1 143 HIS 143 142 142 HIS HIS A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 PRO 146 145 145 PRO PRO A . n A 1 147 SER 147 146 146 SER SER A . n A 1 148 ASN 148 147 147 ASN ASN A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 PRO 150 149 149 PRO PRO A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 GLU 154 153 153 GLU GLU A . n A 1 155 ASN 155 154 154 ASN ASN A . n A 1 156 ASN 156 155 155 ASN ASN A . n A 1 157 VAL 157 156 156 VAL VAL A . n A 1 158 ASP 158 157 157 ASP ASP A . n A 1 159 GLN 159 158 158 GLN GLN A . n A 1 160 ILE 160 159 159 ILE ILE A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 TRP 163 162 162 TRP TRP A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 GLN 166 165 165 GLN GLN A . n A 1 167 TRP 167 166 166 TRP TRP A . n A 1 168 ILE 168 167 167 ILE ILE A . n A 1 169 LYS 169 168 168 LYS LYS A . n A 1 170 ASP 170 169 169 ASP ASP A . n A 1 171 HIS 171 170 170 HIS HIS A . n A 1 172 ASN 172 171 171 ASN ASN A . n A 1 173 SER 173 172 172 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A GLU 140 ? A GLU 139 ? 1_555 LI ? H LI . ? A LI 302 ? 1_555 OE2 ? A GLU 140 ? A GLU 139 ? 1_555 111.0 ? 2 N ? A GLU 140 ? A GLU 139 ? 1_555 LI ? H LI . ? A LI 302 ? 1_555 O4 ? F SO4 . ? A SO4 205 ? 1_555 125.9 ? 3 OE2 ? A GLU 140 ? A GLU 139 ? 1_555 LI ? H LI . ? A LI 302 ? 1_555 O4 ? F SO4 . ? A SO4 205 ? 1_555 88.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-01-11 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 'PROTEUM PLUS' 'data reduction' . ? 2 'PROTEUM PLUS' 'data scaling' . ? 3 SOLVE phasing . ? 4 RESOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 47 ? ? -127.57 -146.41 2 1 ASP A 48 ? ? 174.96 172.14 3 1 HIS A 79 ? ? -87.32 39.34 4 1 CYS A 81 ? ? -154.13 -9.34 5 1 ASN A 171 ? ? -144.20 57.12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'LITHIUM ION' LI 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 201 SO4 SO4 A . C 2 SO4 1 202 202 SO4 SO4 A . D 2 SO4 1 203 203 SO4 SO4 A . E 2 SO4 1 204 204 SO4 SO4 A . F 2 SO4 1 205 205 SO4 SO4 A . G 3 LI 1 301 301 LI LI A . H 3 LI 1 302 302 LI LI A . I 3 LI 1 303 303 LI LI A . J 4 HOH 1 401 401 HOH TIP A . J 4 HOH 2 402 402 HOH TIP A . J 4 HOH 3 403 403 HOH TIP A . J 4 HOH 4 404 404 HOH TIP A . J 4 HOH 5 405 405 HOH TIP A . J 4 HOH 6 406 406 HOH TIP A . J 4 HOH 7 407 407 HOH TIP A . J 4 HOH 8 408 408 HOH TIP A . J 4 HOH 9 409 409 HOH TIP A . J 4 HOH 10 410 410 HOH TIP A . J 4 HOH 11 411 411 HOH TIP A . J 4 HOH 12 412 412 HOH TIP A . J 4 HOH 13 413 413 HOH TIP A . J 4 HOH 14 414 414 HOH TIP A . J 4 HOH 15 415 415 HOH TIP A . J 4 HOH 16 416 416 HOH TIP A . J 4 HOH 17 417 417 HOH TIP A . J 4 HOH 18 418 418 HOH TIP A . J 4 HOH 19 419 419 HOH TIP A . J 4 HOH 20 420 420 HOH TIP A . J 4 HOH 21 421 421 HOH TIP A . J 4 HOH 22 422 422 HOH TIP A . J 4 HOH 23 423 423 HOH TIP A . J 4 HOH 24 424 424 HOH TIP A . J 4 HOH 25 425 425 HOH TIP A . J 4 HOH 26 426 426 HOH TIP A . J 4 HOH 27 427 427 HOH TIP A . J 4 HOH 28 428 428 HOH TIP A . J 4 HOH 29 429 429 HOH TIP A . J 4 HOH 30 430 430 HOH TIP A . J 4 HOH 31 431 431 HOH TIP A . J 4 HOH 32 432 432 HOH TIP A . J 4 HOH 33 433 433 HOH TIP A . J 4 HOH 34 434 434 HOH TIP A . J 4 HOH 35 435 435 HOH TIP A . J 4 HOH 36 436 436 HOH TIP A . J 4 HOH 37 437 437 HOH TIP A . J 4 HOH 38 438 438 HOH TIP A . J 4 HOH 39 439 439 HOH TIP A . J 4 HOH 40 440 440 HOH TIP A . J 4 HOH 41 441 441 HOH TIP A . J 4 HOH 42 442 442 HOH TIP A . J 4 HOH 43 443 443 HOH TIP A . J 4 HOH 44 444 444 HOH TIP A . J 4 HOH 45 445 445 HOH TIP A . J 4 HOH 46 446 446 HOH TIP A . J 4 HOH 47 447 447 HOH TIP A . J 4 HOH 48 448 448 HOH TIP A . J 4 HOH 49 449 449 HOH TIP A . J 4 HOH 50 450 450 HOH TIP A . J 4 HOH 51 451 451 HOH TIP A . J 4 HOH 52 452 452 HOH TIP A . J 4 HOH 53 453 453 HOH TIP A . J 4 HOH 54 454 454 HOH TIP A . J 4 HOH 55 455 455 HOH TIP A . J 4 HOH 56 456 456 HOH TIP A . J 4 HOH 57 457 457 HOH TIP A . J 4 HOH 58 458 458 HOH TIP A . J 4 HOH 59 459 459 HOH TIP A . J 4 HOH 60 460 460 HOH TIP A . J 4 HOH 61 461 461 HOH TIP A . J 4 HOH 62 462 462 HOH TIP A . J 4 HOH 63 463 463 HOH TIP A . J 4 HOH 64 464 464 HOH TIP A . J 4 HOH 65 465 465 HOH TIP A . J 4 HOH 66 466 466 HOH TIP A . J 4 HOH 67 467 467 HOH TIP A . J 4 HOH 68 468 468 HOH TIP A . J 4 HOH 69 469 469 HOH TIP A . J 4 HOH 70 470 470 HOH TIP A . J 4 HOH 71 471 471 HOH TIP A . J 4 HOH 72 472 472 HOH TIP A . J 4 HOH 73 473 473 HOH TIP A . J 4 HOH 74 474 474 HOH TIP A . J 4 HOH 75 475 475 HOH TIP A . J 4 HOH 76 476 476 HOH TIP A . J 4 HOH 77 477 477 HOH TIP A . J 4 HOH 78 478 478 HOH TIP A . J 4 HOH 79 479 479 HOH TIP A . J 4 HOH 80 480 480 HOH TIP A . J 4 HOH 81 481 481 HOH TIP A . J 4 HOH 82 482 482 HOH TIP A . J 4 HOH 83 483 483 HOH TIP A . J 4 HOH 84 484 484 HOH TIP A . J 4 HOH 85 485 485 HOH TIP A . J 4 HOH 86 486 486 HOH TIP A . J 4 HOH 87 487 487 HOH TIP A . J 4 HOH 88 488 488 HOH TIP A . J 4 HOH 89 489 489 HOH TIP A . J 4 HOH 90 490 490 HOH TIP A . J 4 HOH 91 491 491 HOH TIP A . J 4 HOH 92 492 492 HOH TIP A . J 4 HOH 93 493 493 HOH TIP A . J 4 HOH 94 494 494 HOH TIP A . J 4 HOH 95 495 495 HOH TIP A . J 4 HOH 96 496 496 HOH TIP A . J 4 HOH 97 497 497 HOH TIP A . J 4 HOH 98 498 498 HOH TIP A . J 4 HOH 99 499 499 HOH TIP A . J 4 HOH 100 500 500 HOH TIP A . J 4 HOH 101 501 501 HOH TIP A . J 4 HOH 102 502 502 HOH TIP A . J 4 HOH 103 503 503 HOH TIP A . J 4 HOH 104 504 504 HOH TIP A . J 4 HOH 105 505 505 HOH TIP A . J 4 HOH 106 506 506 HOH TIP A . J 4 HOH 107 507 507 HOH TIP A . J 4 HOH 108 508 508 HOH TIP A . J 4 HOH 109 509 509 HOH TIP A . J 4 HOH 110 510 510 HOH TIP A . J 4 HOH 111 511 511 HOH TIP A . J 4 HOH 112 512 512 HOH TIP A . J 4 HOH 113 513 513 HOH TIP A . J 4 HOH 114 514 514 HOH TIP A . J 4 HOH 115 515 515 HOH TIP A . J 4 HOH 116 516 516 HOH TIP A . J 4 HOH 117 517 517 HOH TIP A . J 4 HOH 118 518 518 HOH TIP A . J 4 HOH 119 519 519 HOH TIP A . J 4 HOH 120 520 520 HOH TIP A . J 4 HOH 121 521 521 HOH TIP A . J 4 HOH 122 522 522 HOH TIP A . J 4 HOH 123 523 523 HOH TIP A . J 4 HOH 124 524 524 HOH TIP A . J 4 HOH 125 525 525 HOH TIP A . J 4 HOH 126 526 526 HOH TIP A . J 4 HOH 127 527 527 HOH TIP A . J 4 HOH 128 528 528 HOH TIP A . J 4 HOH 129 529 529 HOH TIP A . J 4 HOH 130 530 530 HOH TIP A . J 4 HOH 131 531 531 HOH TIP A . J 4 HOH 132 532 532 HOH TIP A . J 4 HOH 133 533 533 HOH TIP A . J 4 HOH 134 534 534 HOH TIP A . J 4 HOH 135 535 535 HOH TIP A . J 4 HOH 136 536 536 HOH TIP A . J 4 HOH 137 537 537 HOH TIP A . J 4 HOH 138 538 538 HOH TIP A . J 4 HOH 139 539 539 HOH TIP A . J 4 HOH 140 540 540 HOH TIP A . J 4 HOH 141 541 541 HOH TIP A . J 4 HOH 142 542 542 HOH TIP A . J 4 HOH 143 543 543 HOH TIP A . J 4 HOH 144 544 544 HOH TIP A . J 4 HOH 145 545 545 HOH TIP A . J 4 HOH 146 546 546 HOH TIP A . J 4 HOH 147 547 547 HOH TIP A . J 4 HOH 148 548 548 HOH TIP A . J 4 HOH 149 549 549 HOH TIP A . J 4 HOH 150 550 550 HOH TIP A . J 4 HOH 151 551 551 HOH TIP A . J 4 HOH 152 552 552 HOH TIP A . J 4 HOH 153 553 553 HOH TIP A . J 4 HOH 154 554 554 HOH TIP A . J 4 HOH 155 555 555 HOH TIP A . J 4 HOH 156 556 556 HOH TIP A . J 4 HOH 157 557 557 HOH TIP A . J 4 HOH 158 558 558 HOH TIP A . J 4 HOH 159 559 559 HOH TIP A . J 4 HOH 160 560 560 HOH TIP A . J 4 HOH 161 561 561 HOH TIP A . #