data_1RKK # _entry.id 1RKK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.328 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1RKK RCSB RCSB020839 WWPDB D_1000020839 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1RKK _pdbx_database_status.recvd_initial_deposition_date 2003-11-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Powers, J.P.S.' 1 'Rozek, A.' 2 'Hancock, R.E.W.' 3 # _citation.id primary _citation.title 'Structure-activity relationships for the beta-hairpin cationic antimicrobial peptide polyphemusin I.' _citation.journal_abbrev BIOCHIM.BIOPHYS.ACTA _citation.journal_volume 1698 _citation.page_first 239 _citation.page_last 250 _citation.year 2004 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15134657 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Powers, J.P.S.' 1 ? primary 'Rozek, A.' 2 ? primary 'Hancock, R.E.W.' 3 ? # _cell.entry_id 1RKK _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RKK _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'POLYPHEMUSIN I' _entity.formula_weight 2464.024 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'RRWCFRVCYRGFCYRKCR(NH2)' _entity_poly.pdbx_seq_one_letter_code_can RRWCFRVCYRGFCYRKCRX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ARG n 1 3 TRP n 1 4 CYS n 1 5 PHE n 1 6 ARG n 1 7 VAL n 1 8 CYS n 1 9 TYR n 1 10 ARG n 1 11 GLY n 1 12 PHE n 1 13 CYS n 1 14 TYR n 1 15 ARG n 1 16 LYS n 1 17 CYS n 1 18 ARG n 1 19 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 19 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ;THE PEPTIDE WAS CHEMICALLY SYNTHESIZED USING FMOC SOLID STATE SYNTHESIS. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN TACHYPLEUS POLYPHEMUS (AMERICAN HORESHOE CRAB). ; # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1RKK _struct_ref.pdbx_db_accession 1RKK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1RKK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1RKK _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 DQF-COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'no salt' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2 mM POLYPHEMUSIN I' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1RKK _pdbx_nmr_refine.method 'DISTANCE GEOMETRY WITH SIMULATED ANNEALING' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1RKK _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_ensemble.entry_id 1RKK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 17 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1RKK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement XPLOR-NIH 2.9.0 Schwieters,Kuszewski,Tjandra,Clore 1 'data analysis' NMRView 5.0.3 Johnson,Blevins 2 # _exptl.entry_id 1RKK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1RKK _struct.title 'POLYPHEMUSIN I NMR SOLUTION STRUCTURE' _struct.pdbx_descriptor 'POLYPHEMUSIN I' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1RKK _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PEPTIDE' _struct_keywords.text 'POLYPHEMUSIN, BETA HAIRPIN, DISULFIDE BRIDGE, ANTI-MICROBIAL PEPTIDE, ANTIMICROBIAL PEPTIDE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 17 SG ? ? A CYS 4 A CYS 17 1_555 ? ? ? ? ? ? ? 2.019 ? disulf2 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 13 SG ? ? A CYS 8 A CYS 13 1_555 ? ? ? ? ? ? ? 2.022 ? covale1 covale both ? A ARG 18 C ? ? ? 1_555 A NH2 19 N ? ? A ARG 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.305 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? CYS A 8 ? VAL A 7 CYS A 8 A 2 CYS A 13 ? TYR A 14 ? CYS A 13 TYR A 14 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 7 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 7 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 14 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 14 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 19' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id ARG _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 18 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id ARG _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 18 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 1RKK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1RKK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 NH2 19 19 18 NH2 ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-31 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-06-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_entity_src_syn 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref 7 4 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 4 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 4 4 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 5 4 'Structure model' '_pdbx_nmr_software.name' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE At the time of processing, no reference sequence was present in the sequence database for this species, Tachypleus polyphemus (american horeshoe crab). ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 7 _pdbx_validate_close_contact.auth_atom_id_1 H _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 9 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 PHE _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.49 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 2 ? ? 62.92 136.63 2 1 TRP A 3 ? ? 39.67 93.07 3 1 CYS A 4 ? ? 60.73 133.69 4 1 ARG A 6 ? ? 57.86 105.72 5 1 TYR A 9 ? ? -98.79 44.06 6 1 ARG A 15 ? ? -175.34 79.02 7 2 CYS A 4 ? ? -176.89 141.26 8 2 PHE A 5 ? ? 43.29 -167.58 9 2 TYR A 9 ? ? -88.74 47.88 10 2 LYS A 16 ? ? 177.83 130.30 11 3 ARG A 2 ? ? -178.15 148.46 12 3 TRP A 3 ? ? 43.89 85.15 13 3 CYS A 4 ? ? -171.86 141.22 14 3 PHE A 5 ? ? 55.51 18.27 15 3 ARG A 6 ? ? -177.79 102.14 16 3 TYR A 9 ? ? -90.39 43.33 17 3 TYR A 14 ? ? -128.71 -160.97 18 3 LYS A 16 ? ? -170.60 133.91 19 4 TRP A 3 ? ? 53.59 118.82 20 5 ARG A 2 ? ? -173.17 111.61 21 5 PHE A 5 ? ? 56.66 -164.11 22 5 ARG A 6 ? ? -48.87 103.93 23 6 TRP A 3 ? ? 59.34 115.01 24 6 CYS A 4 ? ? 56.79 113.36 25 6 PHE A 5 ? ? -92.93 -69.14 26 6 ARG A 6 ? ? 62.56 81.97 27 6 TYR A 9 ? ? -94.24 49.49 28 6 LYS A 16 ? ? 170.75 128.56 29 7 ARG A 2 ? ? -172.92 144.38 30 7 TRP A 3 ? ? 57.14 87.86 31 7 CYS A 4 ? ? 178.71 134.44 32 7 TYR A 9 ? ? -90.88 52.14 33 8 TRP A 3 ? ? 38.41 84.78 34 8 PHE A 5 ? ? 71.21 171.36 35 8 ARG A 6 ? ? -154.09 -37.70 36 8 TYR A 9 ? ? -101.40 52.01 37 8 CYS A 17 ? ? 178.23 142.78 38 9 TRP A 3 ? ? -58.95 79.56 39 9 TYR A 9 ? ? -101.57 45.63 40 9 ARG A 15 ? ? -178.50 145.95 41 9 LYS A 16 ? ? -176.44 122.17 42 10 TRP A 3 ? ? 63.26 123.80 43 10 CYS A 4 ? ? 66.77 138.66 44 10 PHE A 5 ? ? -113.73 -150.22 45 10 ARG A 6 ? ? -176.98 101.02 46 10 TYR A 9 ? ? -97.68 43.96 47 10 ARG A 15 ? ? -150.99 76.07 48 10 CYS A 17 ? ? 178.68 149.57 49 11 TRP A 3 ? ? 40.94 82.71 50 11 TYR A 9 ? ? -96.55 40.70 51 12 ARG A 2 ? ? -179.99 83.22 52 12 ARG A 6 ? ? -165.13 77.20 53 13 ARG A 2 ? ? 55.76 110.03 54 13 TRP A 3 ? ? 40.29 88.72 55 14 ARG A 2 ? ? 60.70 128.82 56 14 TRP A 3 ? ? 61.27 124.87 57 14 CYS A 4 ? ? 68.56 139.43 58 14 PHE A 5 ? ? -124.89 -167.72 59 14 ARG A 6 ? ? -164.14 77.24 60 14 TYR A 9 ? ? -97.69 45.43 61 14 ARG A 15 ? ? -155.01 72.86 62 14 CYS A 17 ? ? 179.88 143.67 63 15 TRP A 3 ? ? 38.75 90.15 64 15 CYS A 4 ? ? 62.10 136.86 65 15 PHE A 5 ? ? -93.12 -156.28 66 15 ARG A 6 ? ? -179.70 80.77 67 15 TYR A 9 ? ? -96.12 38.86 68 16 TRP A 3 ? ? -61.39 78.01 69 16 PHE A 5 ? ? -178.69 -169.85 70 16 ARG A 6 ? ? -177.86 -30.05 71 16 TYR A 9 ? ? -86.85 41.96 72 17 ARG A 2 ? ? -177.46 116.30 73 17 ARG A 6 ? ? 36.55 61.31 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 1 ? ? 0.313 'SIDE CHAIN' 2 1 ARG A 2 ? ? 0.215 'SIDE CHAIN' 3 1 ARG A 6 ? ? 0.305 'SIDE CHAIN' 4 1 ARG A 10 ? ? 0.164 'SIDE CHAIN' 5 1 ARG A 15 ? ? 0.248 'SIDE CHAIN' 6 1 ARG A 18 ? ? 0.237 'SIDE CHAIN' 7 2 ARG A 1 ? ? 0.287 'SIDE CHAIN' 8 2 ARG A 2 ? ? 0.279 'SIDE CHAIN' 9 2 ARG A 6 ? ? 0.286 'SIDE CHAIN' 10 2 ARG A 10 ? ? 0.196 'SIDE CHAIN' 11 2 ARG A 15 ? ? 0.207 'SIDE CHAIN' 12 2 ARG A 18 ? ? 0.291 'SIDE CHAIN' 13 3 ARG A 1 ? ? 0.306 'SIDE CHAIN' 14 3 ARG A 2 ? ? 0.244 'SIDE CHAIN' 15 3 ARG A 6 ? ? 0.297 'SIDE CHAIN' 16 3 ARG A 10 ? ? 0.191 'SIDE CHAIN' 17 3 ARG A 15 ? ? 0.156 'SIDE CHAIN' 18 3 ARG A 18 ? ? 0.210 'SIDE CHAIN' 19 4 ARG A 1 ? ? 0.308 'SIDE CHAIN' 20 4 ARG A 2 ? ? 0.141 'SIDE CHAIN' 21 4 ARG A 6 ? ? 0.289 'SIDE CHAIN' 22 4 ARG A 10 ? ? 0.251 'SIDE CHAIN' 23 4 ARG A 15 ? ? 0.248 'SIDE CHAIN' 24 4 ARG A 18 ? ? 0.171 'SIDE CHAIN' 25 5 ARG A 1 ? ? 0.282 'SIDE CHAIN' 26 5 ARG A 2 ? ? 0.296 'SIDE CHAIN' 27 5 ARG A 10 ? ? 0.212 'SIDE CHAIN' 28 5 ARG A 15 ? ? 0.206 'SIDE CHAIN' 29 5 ARG A 18 ? ? 0.120 'SIDE CHAIN' 30 6 ARG A 1 ? ? 0.236 'SIDE CHAIN' 31 6 ARG A 2 ? ? 0.263 'SIDE CHAIN' 32 6 ARG A 6 ? ? 0.267 'SIDE CHAIN' 33 6 ARG A 10 ? ? 0.252 'SIDE CHAIN' 34 6 ARG A 15 ? ? 0.252 'SIDE CHAIN' 35 6 ARG A 18 ? ? 0.113 'SIDE CHAIN' 36 7 ARG A 1 ? ? 0.317 'SIDE CHAIN' 37 7 ARG A 2 ? ? 0.293 'SIDE CHAIN' 38 7 ARG A 6 ? ? 0.150 'SIDE CHAIN' 39 7 ARG A 10 ? ? 0.171 'SIDE CHAIN' 40 7 ARG A 15 ? ? 0.266 'SIDE CHAIN' 41 7 ARG A 18 ? ? 0.307 'SIDE CHAIN' 42 8 ARG A 1 ? ? 0.233 'SIDE CHAIN' 43 8 ARG A 2 ? ? 0.313 'SIDE CHAIN' 44 8 ARG A 6 ? ? 0.085 'SIDE CHAIN' 45 8 ARG A 10 ? ? 0.211 'SIDE CHAIN' 46 8 ARG A 15 ? ? 0.316 'SIDE CHAIN' 47 8 ARG A 18 ? ? 0.311 'SIDE CHAIN' 48 9 ARG A 1 ? ? 0.315 'SIDE CHAIN' 49 9 ARG A 2 ? ? 0.249 'SIDE CHAIN' 50 9 ARG A 6 ? ? 0.316 'SIDE CHAIN' 51 9 ARG A 10 ? ? 0.264 'SIDE CHAIN' 52 9 ARG A 15 ? ? 0.279 'SIDE CHAIN' 53 9 ARG A 18 ? ? 0.213 'SIDE CHAIN' 54 10 ARG A 1 ? ? 0.166 'SIDE CHAIN' 55 10 ARG A 2 ? ? 0.230 'SIDE CHAIN' 56 10 ARG A 6 ? ? 0.206 'SIDE CHAIN' 57 10 ARG A 10 ? ? 0.213 'SIDE CHAIN' 58 10 ARG A 15 ? ? 0.161 'SIDE CHAIN' 59 10 ARG A 18 ? ? 0.314 'SIDE CHAIN' 60 11 ARG A 1 ? ? 0.116 'SIDE CHAIN' 61 11 ARG A 2 ? ? 0.273 'SIDE CHAIN' 62 11 ARG A 6 ? ? 0.160 'SIDE CHAIN' 63 11 ARG A 10 ? ? 0.289 'SIDE CHAIN' 64 11 ARG A 15 ? ? 0.262 'SIDE CHAIN' 65 11 ARG A 18 ? ? 0.287 'SIDE CHAIN' 66 12 ARG A 1 ? ? 0.309 'SIDE CHAIN' 67 12 ARG A 2 ? ? 0.170 'SIDE CHAIN' 68 12 ARG A 10 ? ? 0.232 'SIDE CHAIN' 69 12 ARG A 15 ? ? 0.172 'SIDE CHAIN' 70 12 ARG A 18 ? ? 0.212 'SIDE CHAIN' 71 13 ARG A 1 ? ? 0.299 'SIDE CHAIN' 72 13 ARG A 2 ? ? 0.245 'SIDE CHAIN' 73 13 ARG A 6 ? ? 0.249 'SIDE CHAIN' 74 13 ARG A 10 ? ? 0.284 'SIDE CHAIN' 75 13 ARG A 15 ? ? 0.280 'SIDE CHAIN' 76 13 ARG A 18 ? ? 0.179 'SIDE CHAIN' 77 14 ARG A 1 ? ? 0.310 'SIDE CHAIN' 78 14 ARG A 2 ? ? 0.316 'SIDE CHAIN' 79 14 ARG A 6 ? ? 0.107 'SIDE CHAIN' 80 14 ARG A 10 ? ? 0.235 'SIDE CHAIN' 81 14 ARG A 15 ? ? 0.243 'SIDE CHAIN' 82 14 ARG A 18 ? ? 0.317 'SIDE CHAIN' 83 15 ARG A 1 ? ? 0.215 'SIDE CHAIN' 84 15 ARG A 2 ? ? 0.202 'SIDE CHAIN' 85 15 ARG A 6 ? ? 0.161 'SIDE CHAIN' 86 15 ARG A 10 ? ? 0.275 'SIDE CHAIN' 87 15 ARG A 15 ? ? 0.241 'SIDE CHAIN' 88 15 ARG A 18 ? ? 0.244 'SIDE CHAIN' 89 16 ARG A 1 ? ? 0.221 'SIDE CHAIN' 90 16 ARG A 2 ? ? 0.273 'SIDE CHAIN' 91 16 ARG A 6 ? ? 0.234 'SIDE CHAIN' 92 16 ARG A 10 ? ? 0.184 'SIDE CHAIN' 93 16 ARG A 15 ? ? 0.148 'SIDE CHAIN' 94 16 ARG A 18 ? ? 0.106 'SIDE CHAIN' 95 17 ARG A 1 ? ? 0.202 'SIDE CHAIN' 96 17 ARG A 2 ? ? 0.294 'SIDE CHAIN' 97 17 ARG A 6 ? ? 0.293 'SIDE CHAIN' 98 17 ARG A 10 ? ? 0.266 'SIDE CHAIN' 99 17 ARG A 15 ? ? 0.316 'SIDE CHAIN' 100 17 ARG A 18 ? ? 0.305 'SIDE CHAIN' #