HEADER BINDING PROTEIN 25-MAR-97 1RKM TITLE STRUCTURE OF OPPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGO-PEPTIDE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 OTHER_DETAILS: THE OLIGOPEPTIDE BINDING PROTEIN OPPA IS SYNTHESISED SOURCE 5 AS A 542 AMINO ACID PRE-PROTEIN. THE 25 AMINO ACID SIGNAL PEPTIDE IS SOURCE 6 CLEAVED FROM THE N-TERMINUS TO GIVE A 517 RESIDUE MATURE PROTEIN IN SOURCE 7 THE PERIPLASMIC SPACE. ALL 517 RESIDUES ARE VISIBLE IN THE ELECTRON SOURCE 8 DENSITY MAP. KEYWDS PEPTIDE TRANSPORT, BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.H.SLEIGH,J.R.H.TAME,A.J.WILKINSON REVDAT 3 09-AUG-23 1RKM 1 REMARK REVDAT 2 24-FEB-09 1RKM 1 VERSN REVDAT 1 29-JUL-97 1RKM 0 JRNL AUTH S.H.SLEIGH,J.R.TAME,E.J.DODSON,A.J.WILKINSON JRNL TITL PEPTIDE BINDING IN OPPA, THE CRYSTAL STRUCTURES OF THE JRNL TITL 2 PERIPLASMIC OLIGOPEPTIDE BINDING PROTEIN IN THE UNLIGANDED JRNL TITL 3 FORM AND IN COMPLEX WITH LYSYLLYSINE. JRNL REF BIOCHEMISTRY V. 36 9747 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9245406 JRNL DOI 10.1021/BI970457U REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.TAME,S.H.SLEIGH,A.J.WILKINSON,J.E.LADBURY REMARK 1 TITL THE ROLE OF WATER IN SEQUENCE-INDEPENDENT LIGAND BINDING BY REMARK 1 TITL 2 AN OLIGOPEPTIDE TRANSPORTER PROTEIN REMARK 1 REF NAT.STRUCT.BIOL. V. 3 998 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.D.GLOVER,R.DENNY,N.D.NGUTI,S.MCSWEENEY,A.THOMPSON, REMARK 1 AUTH 2 E.DODSON,A.J.WILKINSON,J.R.H.TAME REMARK 1 TITL STRUCTURE DETERMINATION OF OPPA AT 2.3 ANGSTROMS RESOLUTION REMARK 1 TITL 2 USING MULTIPLE WAVELENGTH ANOMALOUS METHODS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 51 39 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.R.TAME,E.J.DODSON,G.MURSHUDOV,C.F.HIGGINS,A.J.WILKINSON REMARK 1 TITL THE CRYSTAL STRUCTURES OF THE OLIGOPEPTIDE-BINDING PROTEIN REMARK 1 TITL 2 OPPA COMPLEXED WITH TRIPEPTIDE AND TETRAPEPTIDE LIGANDS REMARK 1 REF STRUCTURE V. 3 1395 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.R.TAME,G.N.MURSHUDOV,E.J.DODSON,T.K.NEIL,G.G.DODSON, REMARK 1 AUTH 2 C.F.HIGGINS,A.J.WILKINSON REMARK 1 TITL THE STRUCTURAL BASIS OF SEQUENCE-INDEPENDENT PEPTIDE BINDING REMARK 1 TITL 2 BY OPPA PROTEIN REMARK 1 REF SCIENCE V. 264 1578 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.049 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.051 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.016 ; 0.015 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.194 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.263 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.182 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 5.400 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 21.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 30.200; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.106 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.101 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.937 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.396 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, ROTAVATA, AGROVATA CCP4 REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30015 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: OLIGOPEPTIDE BINDING PROTEIN, PDB CODE 2OLB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M (NH4)2SO4, 0.1M HEPES PH7.5, 0.2M REMARK 280 NACL AND 20MG/ML OPPA REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.47333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.73667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.73667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.47333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 8 CD OE1 NE2 REMARK 480 GLU A 22 CD OE1 OE2 REMARK 480 LYS A 63 CD CE NZ REMARK 480 LYS A 67 CD CE NZ REMARK 480 LYS A 174 CG CD CE NZ REMARK 480 LYS A 178 CG CD CE NZ REMARK 480 GLU A 240 CG CD OE1 OE2 REMARK 480 LYS A 257 CD CE NZ REMARK 480 LYS A 258 CG CD CE NZ REMARK 480 LYS A 305 CE NZ REMARK 480 LYS A 346 CE NZ REMARK 480 LYS A 372 NZ REMARK 480 GLU A 396 CG CD OE1 OE2 REMARK 480 LYS A 398 CG CD CE NZ REMARK 480 LYS A 448 NZ REMARK 480 LYS A 475 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 8 CG GLN A 8 CD 0.378 REMARK 500 GLU A 22 CG GLU A 22 CD -0.287 REMARK 500 SER A 40 CB SER A 40 OG 0.114 REMARK 500 LYS A 174 CB LYS A 174 CG 0.315 REMARK 500 LYS A 346 CD LYS A 346 CE 0.190 REMARK 500 LYS A 372 CE LYS A 372 NZ 0.212 REMARK 500 LYS A 398 CB LYS A 398 CG 0.164 REMARK 500 LYS A 448 CE LYS A 448 NZ 0.416 REMARK 500 LYS A 475 CD LYS A 475 CE -0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 2 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 GLN A 8 CG - CD - OE1 ANGL. DEV. = 16.4 DEGREES REMARK 500 GLN A 8 CG - CD - NE2 ANGL. DEV. = -18.1 DEGREES REMARK 500 GLU A 22 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLU A 22 CG - CD - OE1 ANGL. DEV. = -24.5 DEGREES REMARK 500 ARG A 41 NH1 - CZ - NH2 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 11.3 DEGREES REMARK 500 ASP A 51 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 LYS A 63 CG - CD - CE ANGL. DEV. = 27.9 DEGREES REMARK 500 ARG A 77 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 84 CB - CG - OD1 ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 99 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR A 109 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 LYS A 137 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP A 140 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 LYS A 174 CA - CB - CG ANGL. DEV. = -18.9 DEGREES REMARK 500 LYS A 178 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 201 CD - NE - CZ ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR A 223 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 235 CD - NE - CZ ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG A 235 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 GLU A 240 CB - CG - CD ANGL. DEV. = -26.2 DEGREES REMARK 500 ASN A 247 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 LYS A 257 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 LYS A 257 CG - CD - CE ANGL. DEV. = -30.1 DEGREES REMARK 500 ARG A 265 CD - NE - CZ ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP A 267 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 TYR A 273 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 273 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR A 275 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 275 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 GLN A 280 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP A 286 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 288 CG - CD - NE ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG A 288 CD - NE - CZ ANGL. DEV. = 34.7 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 298 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 300 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 79 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 146.55 169.30 REMARK 500 GLU A 32 -44.15 -133.98 REMARK 500 ASP A 51 -162.02 -77.39 REMARK 500 PRO A 182 -15.30 -44.31 REMARK 500 PRO A 225 41.79 -107.37 REMARK 500 ASN A 246 39.73 -86.34 REMARK 500 TYR A 317 -60.62 -90.45 REMARK 500 SER A 368 154.68 167.71 REMARK 500 THR A 408 60.53 -104.00 REMARK 500 ASP A 410 -74.72 -97.18 REMARK 500 ASN A 421 79.99 -101.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 22 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 84 12.02 REMARK 500 ARG A 99 -11.43 REMARK 500 PRO A 108 10.20 REMARK 500 TYR A 112 -13.30 REMARK 500 LEU A 134 -11.24 REMARK 500 PHE A 155 -11.78 REMARK 500 HIS A 161 -11.41 REMARK 500 PRO A 182 -13.67 REMARK 500 ALA A 190 12.05 REMARK 500 LYS A 194 -14.07 REMARK 500 ARG A 237 -11.91 REMARK 500 PRO A 283 -10.30 REMARK 500 ALA A 325 -11.24 REMARK 500 ILE A 376 10.12 REMARK 500 SER A 425 12.06 REMARK 500 SER A 434 -22.22 REMARK 500 LYS A 442 12.21 REMARK 500 SER A 463 -10.31 REMARK 500 VAL A 480 -10.86 REMARK 500 TYR A 483 -11.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE HELIX AND SHEET RECORDS PRESENTED HERE DIFFER FROM THE REMARK 700 LIST THAT THE PDB HAS GENERATED USING DSSP WHICH APPEAR ON REMARK 700 ACTUAL HELIX AND SHEET RECORDS FURTHER DOWN IN THE ENTRY. REMARK 700 BECAUSE OF LINE LENGTH LIMITATIONS THE FORMAT OF THE SHEET REMARK 700 INFORMATION PRESENTED IN THIS REMARK HAS BEEN MODIFIED. REMARK 700 HELIX 1 1 VAL A 34 LEU A 43 1 REMARK 700 HELIX 2 2 HIS A 91 ALA A 101 1 REMARK 700 HELIX 3 3 TYR A 112 GLY A 116 1 REMARK 700 HELIX 4 4 ILE A 121 ALA A 126 1 REMARK 700 HELIX 5 5 LYS A 169 PHE A 175 1 REMARK 700 HELIX 6 6 GLU A 229 SER A 238 1 REMARK 700 HELIX 7 7 ILE A 250 GLU A 259 1 REMARK 700 HELIX 8 8 VAL A 287 ALA A 296 1 REMARK 700 HELIX 9 9 ARG A 299 LYS A 305 1 REMARK 700 HELIX 10 10 GLN A 337 ALA A 351 1 REMARK 700 HELIX 11 11 ASP A 369 LEU A 386 1 REMARK 700 HELIX 12 12 TRP A 397 GLN A 406 1 REMARK 700 HELIX 13 13 THR A 424 LEU A 427 1 REMARK 700 HELIX 14 14 PRO A 444 LYS A 455 1 REMARK 700 HELIX 15 15 ASP A 459 ASP A 476 1 REMARK 700 SH 1 A 7 VAL A 264 PRO A 268 0 REMARK 700 SH 2 A 7 VAL A 486 LEU A 490 -1 N ARG A 489 O ARG A 265 REMARK 700 SH 3 A 7 ASP A 242 TYR A 245 -1 N THR A 244 O LEU A 490 REMARK 700 SH 4 A 7 THR A 14 ASN A 18 1 N ASN A 18 O MET A 243 REMARK 700 SH 5 A 7 GLN A 220 LEU A 224 1 N GLN A 220 O LEU A 15 REMARK 700 SH 6 A 7 ARG A 201 ARG A 206 -1 N LEU A 204 O VAL A 221 REMARK 700 SH 7 A 7 TYR A 191 VAL A 197 -1 N VAL A 197 O ARG A 201 REMARK 700 SH 1 B 4 ALA A 61 LYS A 67 0 REMARK 700 SH 2 B 4 VAL A 71 LEU A 76 -1 N HIS A 75 O GLU A 62 REMARK 700 SH 3 B 4 THR A 143 THR A 147 -1 N VAL A 146 O TRP A 72 REMARK 700 SH 4 B 4 VAL A 136 ASP A 140 -1 N ASP A 140 O THR A 143 REMARK 700 SH 1 C 5 ASN A 389 GLN A 395 0 REMARK 700 SH 2 C 5 THR A 360 ASN A 366 1 O TYR A 365 N GLN A 395 REMARK 700 SH 3 C 5 VAL A 411 CYS A 417 1 O VAL A 411 N LEU A 364 REMARK 700 SH 4 C 5 CYS A 271 ILE A 277 -1 N GLU A 276 O ALA A 412 REMARK 700 SH 5 C 5 ILE A 479 TYR A 484 -1 N TYR A 483 O TYR A 273 DBREF 1RKM A 1 517 UNP P06202 OPPA_SALTY 26 542 SEQRES 1 A 517 ALA ASP VAL PRO ALA GLY VAL GLN LEU ALA ASP LYS GLN SEQRES 2 A 517 THR LEU VAL ARG ASN ASN GLY SER GLU VAL GLN SER LEU SEQRES 3 A 517 ASP PRO HIS LYS ILE GLU GLY VAL PRO GLU SER ASN VAL SEQRES 4 A 517 SER ARG ASP LEU PHE GLU GLY LEU LEU ILE SER ASP VAL SEQRES 5 A 517 GLU GLY HIS PRO SER PRO GLY VAL ALA GLU LYS TRP GLU SEQRES 6 A 517 ASN LYS ASP PHE LYS VAL TRP THR PHE HIS LEU ARG GLU SEQRES 7 A 517 ASN ALA LYS TRP SER ASP GLY THR PRO VAL THR ALA HIS SEQRES 8 A 517 ASP PHE VAL TYR SER TRP GLN ARG LEU ALA ASP PRO ASN SEQRES 9 A 517 THR ALA SER PRO TYR ALA SER TYR LEU GLN TYR GLY HIS SEQRES 10 A 517 ILE ALA ASN ILE ASP ASP ILE ILE ALA GLY LYS LYS PRO SEQRES 11 A 517 ALA THR ASP LEU GLY VAL LYS ALA LEU ASP ASP HIS THR SEQRES 12 A 517 PHE GLU VAL THR LEU SER GLU PRO VAL PRO TYR PHE TYR SEQRES 13 A 517 LYS LEU LEU VAL HIS PRO SER VAL SER PRO VAL PRO LYS SEQRES 14 A 517 SER ALA VAL GLU LYS PHE GLY ASP LYS TRP THR GLN PRO SEQRES 15 A 517 ALA ASN ILE VAL THR ASN GLY ALA TYR LYS LEU LYS ASN SEQRES 16 A 517 TRP VAL VAL ASN GLU ARG ILE VAL LEU GLU ARG ASN PRO SEQRES 17 A 517 GLN TYR TRP ASP ASN ALA LYS THR VAL ILE ASN GLN VAL SEQRES 18 A 517 THR TYR LEU PRO ILE SER SER GLU VAL THR ASP VAL ASN SEQRES 19 A 517 ARG TYR ARG SER GLY GLU ILE ASP MET THR TYR ASN ASN SEQRES 20 A 517 MET PRO ILE GLU LEU PHE GLN LYS LEU LYS LYS GLU ILE SEQRES 21 A 517 PRO ASN GLU VAL ARG VAL ASP PRO TYR LEU CYS THR TYR SEQRES 22 A 517 TYR TYR GLU ILE ASN ASN GLN LYS ALA PRO PHE ASN ASP SEQRES 23 A 517 VAL ARG VAL ARG THR ALA LEU LYS LEU ALA LEU ASP ARG SEQRES 24 A 517 ASP ILE ILE VAL ASN LYS VAL LYS ASN GLN GLY ASP LEU SEQRES 25 A 517 PRO ALA TYR SER TYR THR PRO PRO TYR THR ASP GLY ALA SEQRES 26 A 517 LYS LEU VAL GLU PRO GLU TRP PHE LYS TRP SER GLN GLN SEQRES 27 A 517 LYS ARG ASN GLU GLU ALA LYS LYS LEU LEU ALA GLU ALA SEQRES 28 A 517 GLY PHE THR ALA ASP LYS PRO LEU THR PHE ASP LEU LEU SEQRES 29 A 517 TYR ASN THR SER ASP LEU HIS LYS LYS LEU ALA ILE ALA SEQRES 30 A 517 VAL ALA SER ILE TRP LYS LYS ASN LEU GLY VAL ASN VAL SEQRES 31 A 517 ASN LEU GLU ASN GLN GLU TRP LYS THR PHE LEU ASP THR SEQRES 32 A 517 ARG HIS GLN GLY THR PHE ASP VAL ALA ARG ALA GLY TRP SEQRES 33 A 517 CYS ALA ASP TYR ASN GLU PRO THR SER PHE LEU ASN THR SEQRES 34 A 517 MET LEU SER ASP SER SER ASN ASN THR ALA HIS TYR LYS SEQRES 35 A 517 SER PRO ALA PHE ASP LYS LEU ILE ALA ASP THR LEU LYS SEQRES 36 A 517 VAL ALA ASP ASP THR GLN ARG SER GLU LEU TYR ALA LYS SEQRES 37 A 517 ALA GLU GLN GLN LEU ASP LYS ASP SER ALA ILE VAL PRO SEQRES 38 A 517 VAL TYR TYR TYR VAL ASN ALA ARG LEU VAL LYS PRO TRP SEQRES 39 A 517 VAL GLY GLY TYR THR GLY LYS ASP PRO LEU ASP ASN ILE SEQRES 40 A 517 TYR VAL LYS ASN LEU TYR ILE ILE LYS HIS FORMUL 2 HOH *126(H2 O) HELIX 1 1 VAL A 34 LEU A 43 1 10 HELIX 2 2 ALA A 90 ALA A 101 1 12 HELIX 3 3 PRO A 103 THR A 105 5 3 HELIX 4 4 ALA A 110 GLY A 116 5 7 HELIX 5 5 ILE A 121 ILE A 125 1 5 HELIX 6 6 ALA A 131 ASP A 133 5 3 HELIX 7 7 PHE A 155 VAL A 160 5 6 HELIX 8 8 PRO A 162 VAL A 164 5 3 HELIX 9 9 LYS A 169 LYS A 178 1 10 HELIX 10 10 ASN A 213 LYS A 215 5 3 HELIX 11 11 GLU A 229 ARG A 237 1 9 HELIX 12 12 ILE A 250 GLU A 259 1 10 HELIX 13 13 VAL A 287 ALA A 296 1 10 HELIX 14 14 ARG A 299 ASN A 304 1 6 HELIX 15 15 GLU A 331 LYS A 334 1 4 HELIX 16 16 GLN A 337 GLU A 350 1 14 HELIX 17 17 ASP A 369 LEU A 386 1 18 HELIX 18 18 TRP A 397 GLN A 406 1 10 HELIX 19 19 PRO A 423 MET A 430 5 8 HELIX 20 20 PRO A 444 LYS A 455 1 12 HELIX 21 21 ASP A 459 LYS A 475 1 17 HELIX 22 22 VAL A 509 ASN A 511 5 3 SHEET 1 A 4 THR A 14 ASN A 18 0 SHEET 2 A 4 GLN A 220 LEU A 224 1 N GLN A 220 O LEU A 15 SHEET 3 A 4 ARG A 201 ARG A 206 -1 N LEU A 204 O VAL A 221 SHEET 4 A 4 TYR A 191 VAL A 197 -1 N VAL A 197 O ARG A 201 SHEET 1 B 2 LEU A 48 SER A 50 0 SHEET 2 B 2 PRO A 56 PRO A 58 -1 N SER A 57 O ILE A 49 SHEET 1 C 4 ALA A 61 LYS A 67 0 SHEET 2 C 4 VAL A 71 LEU A 76 -1 N HIS A 75 O GLU A 62 SHEET 3 C 4 THR A 143 THR A 147 -1 N VAL A 146 O TRP A 72 SHEET 4 C 4 VAL A 136 ASP A 140 -1 N ASP A 140 O THR A 143 SHEET 1 D 2 VAL A 264 PRO A 268 0 SHEET 2 D 2 VAL A 486 LEU A 490 -1 N ARG A 489 O ARG A 265 SHEET 1 E 3 VAL A 411 CYS A 417 0 SHEET 2 E 3 CYS A 271 ILE A 277 -1 N GLU A 276 O ALA A 412 SHEET 3 E 3 ILE A 479 TYR A 484 -1 N TYR A 483 O TYR A 273 SHEET 1 F 2 THR A 360 ASN A 366 0 SHEET 2 F 2 ASN A 389 GLN A 395 1 N ASN A 389 O PHE A 361 SSBOND 1 CYS A 271 CYS A 417 1555 1555 1.97 CISPEP 1 ALA A 282 PRO A 283 0 5.34 CRYST1 97.840 97.840 137.210 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010221 0.005901 0.000000 0.00000 SCALE2 0.000000 0.011802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007288 0.00000