HEADER HYDROLASE 27-NOV-03 1RM8 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-16/MT3-MMP: TITLE 2 CHARACTERIZATION OF MT-MMP SPECIFIC FEATURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-16; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: MMP-16; MT3-MMP; MEMBRANE-TYPE MATRIX METALLOPROTEINASE 3; COMPND 6 MT-MMP 3; MTMMP3; MEMBRANE-TYPE-3 MATRIX METALLOPROTEINASE; MT3MMP; COMPND 7 MMP-X2; COMPND 8 EC: 3.4.24.-; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: COMPLEXED WITH BATIMASTAT (BB94) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7CDMP3 KEYWDS MMP-16, MT3-MMP, MT-MMP, MEMBRANE TYPE - MATRIX METALLOPROTEINASE, KEYWDS 2 BATIMASTAT, HYDROXAMATE INHIBITOR, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.LANG,M.BRAUN,N.E.SOUNNI,A.NOEL,F.FRANKENNE,J.-M.FOIDART,W.BODE, AUTHOR 2 K.MASKOS REVDAT 5 23-AUG-23 1RM8 1 REMARK REVDAT 4 28-JUL-21 1RM8 1 REMARK LINK REVDAT 3 08-FEB-17 1RM8 1 AUTHOR VERSN REVDAT 2 24-FEB-09 1RM8 1 VERSN REVDAT 1 09-MAR-04 1RM8 0 JRNL AUTH R.LANG,M.BRAUN,N.E.SOUNNI,A.NOEL,F.FRANKENNE,J.M.FOIDART, JRNL AUTH 2 W.BODE,K.MASKOS JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-16/MT3-MMP: JRNL TITL 2 CHARACTERIZATION OF MT-MMP SPECIFIC FEATURES. JRNL REF J.MOL.BIOL. V. 336 213 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14741217 JRNL DOI 10.1016/J.JMB.2003.12.022 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 18455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 900 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.017 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.712 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-99; 18-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 293; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; MPG/DESY, REMARK 200 HAMBURG REMARK 200 BEAMLINE : NULL; BW6 REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.0503 REMARK 200 MONOCHROMATOR : GRAPHITE; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 16.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB CODE 1BQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, SODIUM/POTASSIUM TARTRATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.68400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.02600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.34200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.68400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.34200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.02600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 178 REMARK 475 ASP A 236 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 128 CD OE1 NE2 REMARK 480 LYS A 130 CE NZ REMARK 480 LYS A 137 CE NZ REMARK 480 ASP A 145 OD1 OD2 REMARK 480 SER A 173 CB OG REMARK 480 LEU A 175 C O CB CG CD1 CD2 REMARK 480 GLU A 176 N CB CG CD OE1 OE2 REMARK 480 ASN A 177 N CA C O REMARK 480 LYS A 179 N REMARK 480 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 480 ASN A 232 O REMARK 480 PRO A 233 O CB CG CD REMARK 480 ASN A 234 C O CG OD1 ND2 REMARK 480 HIS A 235 CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 272 CG CD OE1 OE2 REMARK 480 ASP A 274 CA O CB CG OD1 OD2 REMARK 480 ASN A 275 CA CB CG OD1 ND2 REMARK 480 LYS A 277 CG CD CE NZ REMARK 480 GLN A 284 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 125 -89.40 -46.15 REMARK 500 GLU A 176 70.14 59.48 REMARK 500 ASN A 177 76.62 13.67 REMARK 500 LYS A 179 -78.26 -146.31 REMARK 500 HIS A 193 31.84 -149.73 REMARK 500 PRO A 233 37.71 -67.47 REMARK 500 ASN A 234 106.43 57.59 REMARK 500 HIS A 235 -90.98 -173.39 REMARK 500 ASN A 275 52.57 -115.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 145 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 275 13.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 O REMARK 620 2 GLY A 215 O 135.1 REMARK 620 3 GLY A 217 O 80.5 102.0 REMARK 620 4 ASP A 219 OD2 111.9 112.2 97.1 REMARK 620 5 HOH A1023 O 59.9 77.2 75.2 169.2 REMARK 620 6 HOH A1076 O 82.2 93.1 162.3 85.5 99.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 193 NE2 REMARK 620 2 ASP A 195 OD2 105.2 REMARK 620 3 HIS A 208 NE2 124.4 106.0 REMARK 620 4 HIS A 208 NE2 123.9 103.2 3.6 REMARK 620 5 HIS A 221 ND1 109.2 98.9 109.8 112.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD1 REMARK 620 2 GLY A 201 O 86.7 REMARK 620 3 GLY A 203 O 85.4 88.5 REMARK 620 4 PHE A 205 O 87.7 173.5 87.8 REMARK 620 5 ASP A 223 OD1 93.8 84.7 173.1 99.0 REMARK 620 6 GLU A 226 OE1 177.7 95.3 93.5 90.2 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 246 NE2 REMARK 620 2 HIS A 250 NE2 99.8 REMARK 620 3 HIS A 256 NE2 108.8 97.0 REMARK 620 4 BAT A 800 O1 102.3 156.0 84.7 REMARK 620 5 BAT A 800 O2 105.7 89.2 143.2 75.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BAT A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BQQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MT1-MMP / TIMP-2 COMPLEX REMARK 900 RELATED ID: 1JK3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MMP-12 (MACROPHAGE ELASTASE) AT TRUE REMARK 900 ATOMIC RESOLUTION REMARK 900 RELATED ID: 1MMB RELATED DB: PDB REMARK 900 COMPLEX OF BB94 (BATIMASTAT) WITH THE CATALYTIC DOMAIN OF MATRIX REMARK 900 METALLOPROTEINASE-8 (MMP-8) DBREF 1RM8 A 124 292 UNP P51512 MMP16_HUMAN 124 292 SEQRES 1 A 169 GLY GLN LYS TRP GLN HIS LYS HIS ILE THR TYR SER ILE SEQRES 2 A 169 LYS ASN VAL THR PRO LYS VAL GLY ASP PRO GLU THR ARG SEQRES 3 A 169 LYS ALA ILE ARG ARG ALA PHE ASP VAL TRP GLN ASN VAL SEQRES 4 A 169 THR PRO LEU THR PHE GLU GLU VAL PRO TYR SER GLU LEU SEQRES 5 A 169 GLU ASN GLY LYS ARG ASP VAL ASP ILE THR ILE ILE PHE SEQRES 6 A 169 ALA SER GLY PHE HIS GLY ASP SER SER PRO PHE ASP GLY SEQRES 7 A 169 GLU GLY GLY PHE LEU ALA HIS ALA TYR PHE PRO GLY PRO SEQRES 8 A 169 GLY ILE GLY GLY ASP THR HIS PHE ASP SER ASP GLU PRO SEQRES 9 A 169 TRP THR LEU GLY ASN PRO ASN HIS ASP GLY ASN ASP LEU SEQRES 10 A 169 PHE LEU VAL ALA VAL HIS GLU LEU GLY HIS ALA LEU GLY SEQRES 11 A 169 LEU GLU HIS SER ASN ASP PRO THR ALA ILE MET ALA PRO SEQRES 12 A 169 PHE TYR GLN TYR MET GLU THR ASP ASN PHE LYS LEU PRO SEQRES 13 A 169 ASN ASP ASP LEU GLN GLY ILE GLN LYS ILE TYR GLY PRO HET ZN A 500 1 HET ZN A 501 1 HET CA A 502 1 HET CA A 504 1 HET BAT A 800 32 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM BAT 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2- HETNAM 2 BAT THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N- HETNAM 3 BAT METHYLAMIDE HETSYN BAT BATIMASTAT; BB94 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 6 BAT C23 H31 N3 O4 S2 FORMUL 7 HOH *115(H2 O) HELIX 1 1 GLY A 144 ASN A 161 1 18 HELIX 2 2 LEU A 240 LEU A 252 1 13 HELIX 3 3 PRO A 279 GLY A 291 1 13 SHEET 1 A 5 THR A 166 GLU A 169 0 SHEET 2 A 5 HIS A 131 ILE A 136 1 N ILE A 132 O THR A 166 SHEET 3 A 5 ILE A 184 ALA A 189 1 O ILE A 186 N SER A 135 SHEET 4 A 5 THR A 220 ASP A 223 1 O PHE A 222 N ILE A 187 SHEET 5 A 5 ALA A 207 ALA A 209 -1 N HIS A 208 O HIS A 221 SHEET 1 B 2 TRP A 228 THR A 229 0 SHEET 2 B 2 ASN A 238 ASP A 239 1 O ASN A 238 N THR A 229 LINK O ASP A 183 CA CA A 504 1555 1555 2.42 LINK NE2 HIS A 193 ZN ZN A 501 1555 1555 2.02 LINK OD2 ASP A 195 ZN ZN A 501 1555 1555 1.97 LINK OD1 ASP A 200 CA CA A 502 1555 1555 2.34 LINK O GLY A 201 CA CA A 502 1555 1555 2.27 LINK O GLY A 203 CA CA A 502 1555 1555 2.30 LINK O PHE A 205 CA CA A 502 1555 1555 2.39 LINK NE2AHIS A 208 ZN ZN A 501 1555 1555 2.18 LINK NE2BHIS A 208 ZN ZN A 501 1555 1555 2.25 LINK O GLY A 215 CA CA A 504 1555 1555 2.32 LINK O GLY A 217 CA CA A 504 1555 1555 2.28 LINK OD2 ASP A 219 CA CA A 504 1555 1555 2.26 LINK ND1 HIS A 221 ZN ZN A 501 1555 1555 2.15 LINK OD1 ASP A 223 CA CA A 502 1555 1555 2.32 LINK OE1 GLU A 226 CA CA A 502 1555 1555 2.11 LINK NE2 HIS A 246 ZN ZN A 500 1555 1555 2.16 LINK NE2 HIS A 250 ZN ZN A 500 1555 1555 2.02 LINK NE2 HIS A 256 ZN ZN A 500 1555 1555 2.11 LINK ZN ZN A 500 O1 BAT A 800 1555 1555 1.87 LINK ZN ZN A 500 O2 BAT A 800 1555 1555 2.25 LINK CA CA A 504 O HOH A1023 1555 1555 3.17 LINK CA CA A 504 O HOH A1076 1555 1555 2.36 SITE 1 AC1 4 HIS A 246 HIS A 250 HIS A 256 BAT A 800 SITE 1 AC2 4 HIS A 193 ASP A 195 HIS A 208 HIS A 221 SITE 1 AC3 6 ASP A 200 GLY A 201 GLY A 203 PHE A 205 SITE 2 AC3 6 ASP A 223 GLU A 226 SITE 1 AC4 6 ASP A 183 GLY A 215 ILE A 216 GLY A 217 SITE 2 AC4 6 ASP A 219 HOH A1076 SITE 1 AC5 16 GLY A 194 GLY A 204 PHE A 205 LEU A 206 SITE 2 AC5 16 ALA A 207 HIS A 246 GLU A 247 HIS A 250 SITE 3 AC5 16 HIS A 256 PRO A 260 PRO A 266 PHE A 267 SITE 4 AC5 16 TYR A 268 ZN A 500 HOH A1000 HOH A1029 CRYST1 51.210 51.210 149.368 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019527 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006695 0.00000