HEADER GROWTH FACTOR 21-MAY-98 1RML TITLE NMR STUDY OF ACID FIBROBLAST GROWTH FACTOR BOUND TO 1,3,6-NAPHTHALENE TITLE 2 TRISULPHONATE, 26 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACIDIC FIBROBLAST GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23 - 154; COMPND 5 SYNONYM: HEPARIN-BINDING GROWTH FACTOR 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMG47 KEYWDS GROWTH FACTOR, FIBROBLAST GROWTH FACTOR, ANTITUMORAL, NAPHTHALENE EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR R.M.LOZANO,M.A.JIMENEZ,J.SANTORO,M.RICO,G.GIMENEZ-GALLEGO REVDAT 4 02-MAR-22 1RML 1 REMARK REVDAT 3 24-FEB-09 1RML 1 VERSN REVDAT 2 01-APR-03 1RML 1 JRNL REVDAT 1 11-NOV-98 1RML 0 JRNL AUTH R.M.LOZANO,M.JIMENEZ,J.SANTORO,M.RICO,G.GIMENEZ-GALLEGO JRNL TITL SOLUTION STRUCTURE OF ACIDIC FIBROBLAST GROWTH FACTOR BOUND JRNL TITL 2 TO 1,3, 6-NAPHTHALENETRISULFONATE: A MINIMAL MODEL FOR THE JRNL TITL 3 ANTI-TUMORAL ACTION OF SURAMINS AND SURADISTAS. JRNL REF J.MOL.BIOL. V. 281 899 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9719643 JRNL DOI 10.1006/JMBI.1998.1977 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.PINEDA-LUCENA,M.A.JIMENEZ,R.M.LOZANO,J.L.NIETO,J.SANTORO, REMARK 1 AUTH 2 M.RICO,G.GIMENEZ-GALLEGO REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF ACIDIC FIBROBLAST GROWTH REMARK 1 TITL 2 FACTOR IN SOLUTION: EFFECTS OF BINDING TO A HEPARIN REMARK 1 TITL 3 FUNCTIONAL ANALOG REMARK 1 REF J.MOL.BIOL. V. 264 162 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.PINEDA-LUCENA,M.A.JIMENEZ,J.L.NIETO,J.SANTORO,M.RICO, REMARK 1 AUTH 2 G.GIMENEZ-GALLEGO REMARK 1 TITL 1H-NMR ASSIGNMENT AND SOLUTION STRUCTURE OF HUMAN ACIDIC REMARK 1 TITL 2 FIBROBLAST GROWTH FACTOR ACTIVATED BY INOSITOL HEXASULFATE REMARK 1 REF J.MOL.BIOL. V. 242 81 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.PINEDA-LUCENA,M.A.JIMENEZ,J.L.NIETO,J.SANTORO,M.RICO, REMARK 1 AUTH 2 G.GIMENEZ-GALLEGO REMARK 1 TITL ERRATUM. 1H-NMR ASSIGNMENT AND SOLUTION STRUCTURE OF HUMAN REMARK 1 TITL 2 ACIDIC FIBROBLAST GROWTH FACTOR ACTIVATED BY INOSITOL REMARK 1 TITL 3 HEXASULFATE REMARK 1 REF J.MOL.BIOL. V. 244 251 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA REMARK 3 AUTHORS : GUNTERT, BRAUN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RML COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176123. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY; TOCSY; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX-600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA REMARK 210 METHOD USED : VARIABLE TARGET FUNCTION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-26 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 14 REMARK 465 PHE A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 TYR A 22 REMARK 465 LYS A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 82 H GLY A 85 1.51 REMARK 500 O LYS A 126 H ASN A 128 1.55 REMARK 500 O ALA A 80 H TYR A 88 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 26 138.27 -172.82 REMARK 500 1 SER A 31 -94.71 -54.64 REMARK 500 1 LEU A 37 150.09 -37.61 REMARK 500 1 ASP A 46 -171.21 172.41 REMARK 500 1 SER A 52 69.35 179.90 REMARK 500 1 HIS A 55 103.17 -168.90 REMARK 500 1 GLN A 59 142.79 -176.93 REMARK 500 1 SER A 61 55.34 -144.87 REMARK 500 1 SER A 64 136.71 159.60 REMARK 500 1 GLU A 67 101.82 -163.51 REMARK 500 1 SER A 72 71.67 -66.78 REMARK 500 1 THR A 73 109.96 -38.13 REMARK 500 1 GLU A 74 -63.65 168.56 REMARK 500 1 LEU A 79 106.75 -59.84 REMARK 500 1 ASN A 94 -153.18 -157.07 REMARK 500 1 GLU A 95 69.42 -66.68 REMARK 500 1 GLU A 96 -47.90 -179.11 REMARK 500 1 LEU A 98 170.84 -52.31 REMARK 500 1 LEU A 100 101.29 -41.85 REMARK 500 1 ARG A 102 -95.97 -142.80 REMARK 500 1 LEU A 103 119.12 -175.87 REMARK 500 1 GLU A 105 -103.03 -120.66 REMARK 500 1 ASN A 106 47.14 -167.36 REMARK 500 1 HIS A 107 -64.83 -172.04 REMARK 500 1 TYR A 108 -156.60 -59.72 REMARK 500 1 ASN A 109 77.27 -163.69 REMARK 500 1 ILE A 112 114.14 -160.68 REMARK 500 1 SER A 113 95.13 -37.62 REMARK 500 1 HIS A 116 55.71 -153.87 REMARK 500 1 PHE A 122 179.53 -55.96 REMARK 500 1 LYS A 126 128.34 -36.46 REMARK 500 1 LYS A 127 59.44 -67.85 REMARK 500 1 ASN A 128 -44.46 -150.05 REMARK 500 1 SER A 130 114.72 169.92 REMARK 500 1 CYS A 131 -178.97 -58.41 REMARK 500 1 LYS A 132 -167.55 -111.49 REMARK 500 1 ARG A 133 110.48 -170.12 REMARK 500 1 ARG A 136 41.00 169.39 REMARK 500 1 THR A 137 59.09 -148.95 REMARK 500 1 TYR A 139 -177.41 -49.70 REMARK 500 1 GLN A 141 -90.29 -133.89 REMARK 500 1 LYS A 142 60.37 -178.40 REMARK 500 1 LEU A 145 91.63 -52.88 REMARK 500 1 VAL A 151 56.89 -172.22 REMARK 500 1 SER A 152 87.35 -56.75 REMARK 500 2 SER A 31 -90.43 -61.14 REMARK 500 2 LEU A 37 145.95 -38.42 REMARK 500 2 ASP A 46 -159.42 -175.84 REMARK 500 2 ARG A 51 123.00 -34.31 REMARK 500 2 SER A 52 69.46 179.75 REMARK 500 REMARK 500 THIS ENTRY HAS 1035 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NTS A 178 DBREF 1RML A 0 154 UNP P05230 FGF1_HUMAN 1 155 SEQRES 1 A 155 MET ALA GLU GLY GLU ILE THR THR PHE THR ALA LEU THR SEQRES 2 A 155 GLU LYS PHE ASN LEU PRO PRO GLY ASN TYR LYS LYS PRO SEQRES 3 A 155 LYS LEU LEU TYR CYS SER ASN GLY GLY HIS PHE LEU ARG SEQRES 4 A 155 ILE LEU PRO ASP GLY THR VAL ASP GLY THR ARG ASP ARG SEQRES 5 A 155 SER ASP GLN HIS ILE GLN LEU GLN LEU SER ALA GLU SER SEQRES 6 A 155 VAL GLY GLU VAL TYR ILE LYS SER THR GLU THR GLY GLN SEQRES 7 A 155 TYR LEU ALA MET ASP THR ASP GLY LEU LEU TYR GLY SER SEQRES 8 A 155 GLN THR PRO ASN GLU GLU CYS LEU PHE LEU GLU ARG LEU SEQRES 9 A 155 GLU GLU ASN HIS TYR ASN THR TYR ILE SER LYS LYS HIS SEQRES 10 A 155 ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS LYS ASN GLY SEQRES 11 A 155 SER CYS LYS ARG GLY PRO ARG THR HIS TYR GLY GLN LYS SEQRES 12 A 155 ALA ILE LEU PHE LEU PRO LEU PRO VAL SER SER ASP HET NTS A 178 27 HETNAM NTS NAPHTHALENE TRISULFONATE FORMUL 2 NTS C10 H5 O9 S3 3- HELIX 1 1 ALA A 117 LYS A 119 5 3 SHEET 1 A 2 LEU A 28 CYS A 30 0 SHEET 2 A 2 PHE A 146 PRO A 148 -1 N LEU A 147 O TYR A 29 SHEET 1 B 2 PHE A 36 ILE A 39 0 SHEET 2 B 2 VAL A 45 THR A 48 -1 N THR A 48 O PHE A 36 SHEET 1 C 2 LEU A 79 MET A 81 0 SHEET 2 C 2 LEU A 87 GLY A 89 -1 N TYR A 88 O ALA A 80 SITE 1 AC1 10 GLY A 124 LYS A 126 LYS A 127 THR A 137 SITE 2 AC1 10 HIS A 138 TYR A 139 GLN A 141 LYS A 142 SITE 3 AC1 10 ALA A 143 ILE A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1