HEADER HYDROLASE 28-NOV-03 1RMY TITLE CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/PHOSPHOTRANSFERASE TITLE 2 TERNARY COMPLEX WITH DEOXYCYTOSINE AND PHOSPHATE BOUND TO THE TITLE 3 CATALYTIC METAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS B ACID PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: APHA, NAPA, B4055, SF4149, S3580; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PATAC KEYWDS CLASS B ACID PHOSPHATASE, DDDD ACID PHOSPHATASE, METALLO-ENZYME, KEYWDS 2 DCMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CALDERONE,C.FORLEO,M.BENVENUTI,G.M.ROSSOLINI,M.C.THALLER,S.MANGANI REVDAT 4 23-AUG-23 1RMY 1 REMARK LINK REVDAT 3 13-JUL-11 1RMY 1 VERSN REVDAT 2 24-FEB-09 1RMY 1 VERSN REVDAT 1 14-DEC-04 1RMY 0 JRNL AUTH V.CALDERONE,C.FORLEO,M.BENVENUTI,G.M.ROSSOLINI,M.C.THALLER, JRNL AUTH 2 S.MANGANI JRNL TITL INSIGHTS IN THE CATALYTIC MECHANISM OF APHA FROM ESCHERICHIA JRNL TITL 2 COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.THALLER,S.SCHIPPA,A.BONCI,S.CRESTI,G.M.ROSSOLINI REMARK 1 TITL IDENTIFICATION OF THE GENE (APHA) ENCODING THE CLASS B ACID REMARK 1 TITL 2 PHOSPHATASE/PHOSPHOTRANSFERASE OF ESCHERICHIA COLI MG1655 REMARK 1 TITL 3 AND CHARACTERIZATION OF ITS PRODUCT REMARK 1 REF FEMS MICROBIOL.LETT. V. 146 191 1997 REMARK 1 REFN ISSN 0378-1097 REMARK 1 DOI 10.1016/S0378-1097(96)00474-0 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.FORLEO,M.BENVENUTI,V.CALDERONE,S.SCHIPPA,J.D.DOCQUIER, REMARK 1 AUTH 2 M.C.THALLER,G.M ROSSOLINI,S.MANGANI REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY CHARACTERIZATION OF THE CLASS B ACID PHOSPHATASE REMARK 1 TITL 3 (APHA) FROM ESCHERICHIA COLI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1058 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444903006826 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 3918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3132 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 285 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 787 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.026 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3410 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4638 ; 1.497 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 5.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2668 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1795 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 571 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.029 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 74 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2088 ; 0.813 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3384 ; 1.369 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 2.554 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1254 ; 4.162 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000020893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05800 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL FOCUSING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL FOCUSING REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1N8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: APHA 6MG/ML, 50MM NA ACETATE, 25% PEG REMARK 280 6000, 10MM DCMP, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.94100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.19650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.94100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.19650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER, BUT THERE IS A DIMER REMARK 300 IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1041 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 890 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1152 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 167 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 171 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 46 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 45 -61.86 -90.39 REMARK 500 SER A 64 68.22 -155.71 REMARK 500 ILE B 45 -63.51 -97.91 REMARK 500 SER B 64 70.07 -165.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 813 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 ASP A 46 O 94.3 REMARK 620 3 ASP A 167 OD1 92.1 92.1 REMARK 620 4 HOH A 995 O 92.2 97.8 168.9 REMARK 620 5 HOH A1195 O 178.0 84.2 86.7 89.3 REMARK 620 6 HOH A1204 O 87.9 177.4 86.5 83.4 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 814 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 44 OD2 REMARK 620 2 ASP B 46 O 92.9 REMARK 620 3 ASP B 167 OD1 87.1 90.5 REMARK 620 4 PO4 B 800 O3 101.7 98.7 166.9 REMARK 620 5 HOH B1190 O 93.3 171.0 83.3 86.4 REMARK 620 6 HOH B1209 O 170.3 82.7 84.3 87.5 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCZ B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCZ A 807 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N8N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AU3+ COMPLEX OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 1.7 A RESOLUTION REMARK 900 RELATED ID: 1N9K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BROMIDE ADDUCT OF APHA CLASS B ACID REMARK 900 PHOSPHATASE/PHOSPHOTRANSFERASE FROM E. COLI AT 2.2 A RESOLUTION REMARK 900 RELATED ID: 1RM7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/ REMARK 900 PHOSPHOTRANSFERASE TERNARY COMPLEX WITH ADENOSINE AND PHOSPHATE AT REMARK 900 2 A RESOLUTION REMARK 900 RELATED ID: 1RMQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/ REMARK 900 PHOSPHOTRANSFERASE WITH OSMIATE MIMICKING THE CATALYTIC INTERMEDIATE REMARK 900 RELATED ID: 1RMT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/ REMARK 900 PHOSPHOTRANSFERASE COMPLEXED WITH ADENOSINE REMARK 900 RELATED ID: 1RMW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APHA CLASS B ACID PHOSPHATASE/ REMARK 900 PHOSPHOTRANSFERASE TERNARY COMPLEX WITH ADENOSINE AND PHOSPHATE REMARK 900 BOUND TO THE CATALYTIC METAL AT 1.2 A RESOLUTION DBREF 1RMY A 1 212 UNP P32697 APHA_ECOLI 26 237 DBREF 1RMY B 1 212 UNP P32697 APHA_ECOLI 26 237 SEQRES 1 A 212 SER SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA SEQRES 2 A 212 ARG LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL SEQRES 3 A 212 ALA GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET SEQRES 4 A 212 ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SEQRES 5 A 212 SER PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO SEQRES 6 A 212 GLU SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU SEQRES 7 A 212 LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS SEQRES 8 A 212 GLU VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG SEQRES 9 A 212 GLY ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR SEQRES 10 A 212 LYS THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE SEQRES 11 A 212 HIS ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA SEQRES 12 A 212 GLY ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU SEQRES 13 A 212 GLN ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP SEQRES 14 A 212 ASN ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY SEQRES 15 A 212 ILE ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO SEQRES 16 A 212 LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL SEQRES 17 A 212 ASN SER GLU TYR SEQRES 1 B 212 SER SER PRO SER PRO LEU ASN PRO GLY THR ASN VAL ALA SEQRES 2 B 212 ARG LEU ALA GLU GLN ALA PRO ILE HIS TRP VAL SER VAL SEQRES 3 B 212 ALA GLN ILE GLU ASN SER LEU ALA GLY ARG PRO PRO MET SEQRES 4 B 212 ALA VAL GLY PHE ASP ILE ASP ASP THR VAL LEU PHE SER SEQRES 5 B 212 SER PRO GLY PHE TRP ARG GLY LYS LYS THR PHE SER PRO SEQRES 6 B 212 GLU SER GLU ASP TYR LEU LYS ASN PRO VAL PHE TRP GLU SEQRES 7 B 212 LYS MET ASN ASN GLY TRP ASP GLU PHE SER ILE PRO LYS SEQRES 8 B 212 GLU VAL ALA ARG GLN LEU ILE ASP MET HIS VAL ARG ARG SEQRES 9 B 212 GLY ASP ALA ILE PHE PHE VAL THR GLY ARG SER PRO THR SEQRES 10 B 212 LYS THR GLU THR VAL SER LYS THR LEU ALA ASP ASN PHE SEQRES 11 B 212 HIS ILE PRO ALA THR ASN MET ASN PRO VAL ILE PHE ALA SEQRES 12 B 212 GLY ASP LYS PRO GLY GLN ASN THR LYS SER GLN TRP LEU SEQRES 13 B 212 GLN ASP LYS ASN ILE ARG ILE PHE TYR GLY ASP SER ASP SEQRES 14 B 212 ASN ASP ILE THR ALA ALA ARG ASP VAL GLY ALA ARG GLY SEQRES 15 B 212 ILE ARG ILE LEU ARG ALA SER ASN SER THR TYR LYS PRO SEQRES 16 B 212 LEU PRO GLN ALA GLY ALA PHE GLY GLU GLU VAL ILE VAL SEQRES 17 B 212 ASN SER GLU TYR HET MG A 813 1 HET DCZ A 807 16 HET MG B 814 1 HET PO4 B 800 5 HET DCZ B 801 16 HETNAM MG MAGNESIUM ION HETNAM DCZ 2'-DEOXYCYTIDINE HETNAM PO4 PHOSPHATE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 DCZ 2(C9 H13 N3 O4) FORMUL 6 PO4 O4 P 3- FORMUL 8 HOH *787(H2 O) HELIX 1 1 ASN A 11 GLU A 17 1 7 HELIX 2 2 SER A 25 LEU A 33 1 9 HELIX 3 3 SER A 52 SER A 64 1 13 HELIX 4 4 GLU A 68 LYS A 72 5 5 HELIX 5 5 ASN A 73 ASN A 82 1 10 HELIX 6 6 GLY A 83 SER A 88 5 6 HELIX 7 7 LYS A 91 GLY A 105 1 15 HELIX 8 8 THR A 121 PHE A 130 1 10 HELIX 9 9 THR A 151 LYS A 159 1 9 HELIX 10 10 SER A 168 VAL A 178 1 11 HELIX 11 11 ASN B 11 GLU B 17 1 7 HELIX 12 12 SER B 25 LEU B 33 1 9 HELIX 13 13 SER B 52 SER B 64 1 13 HELIX 14 14 GLU B 68 LYS B 72 5 5 HELIX 15 15 ASN B 73 ASN B 81 1 9 HELIX 16 16 GLY B 83 SER B 88 5 6 HELIX 17 17 LYS B 91 GLY B 105 1 15 HELIX 18 18 THR B 121 HIS B 131 1 11 HELIX 19 19 LYS B 152 LYS B 159 1 8 HELIX 20 20 SER B 168 VAL B 178 1 11 SHEET 1 A 7 HIS A 22 VAL A 24 0 SHEET 2 A 7 GLU A 205 ILE A 207 1 O VAL A 206 N HIS A 22 SHEET 3 A 7 ARG A 181 ARG A 184 1 N ARG A 184 O GLU A 205 SHEET 4 A 7 ILE A 161 GLY A 166 1 N PHE A 164 O ARG A 181 SHEET 5 A 7 ALA A 40 PHE A 43 1 N ALA A 40 O ARG A 162 SHEET 6 A 7 ALA A 107 THR A 112 1 O ALA A 107 N VAL A 41 SHEET 7 A 7 ILE A 141 PHE A 142 1 O ILE A 141 N THR A 112 SHEET 1 B 2 LEU A 50 PHE A 51 0 SHEET 2 B 2 ILE A 89 PRO A 90 -1 O ILE A 89 N PHE A 51 SHEET 1 C 7 HIS B 22 VAL B 24 0 SHEET 2 C 7 GLU B 205 ILE B 207 1 O VAL B 206 N VAL B 24 SHEET 3 C 7 ARG B 181 ARG B 184 1 N ARG B 184 O ILE B 207 SHEET 4 C 7 ILE B 161 GLY B 166 1 N PHE B 164 O ILE B 183 SHEET 5 C 7 ALA B 40 PHE B 43 1 N ALA B 40 O ARG B 162 SHEET 6 C 7 ALA B 107 THR B 112 1 O ALA B 107 N VAL B 41 SHEET 7 C 7 ILE B 141 PHE B 142 1 O ILE B 141 N THR B 112 SHEET 1 D 2 LEU B 50 PHE B 51 0 SHEET 2 D 2 ILE B 89 PRO B 90 -1 O ILE B 89 N PHE B 51 LINK OD2 ASP A 44 MG MG A 813 1555 1555 1.97 LINK O ASP A 46 MG MG A 813 1555 1555 2.05 LINK OD1 ASP A 167 MG MG A 813 1555 1555 2.04 LINK MG MG A 813 O HOH A 995 1555 1555 2.10 LINK MG MG A 813 O HOH A1195 1555 1555 2.15 LINK MG MG A 813 O HOH A1204 1555 1555 2.10 LINK OD2 ASP B 44 MG MG B 814 1555 1555 1.95 LINK O ASP B 46 MG MG B 814 1555 1555 2.10 LINK OD1 ASP B 167 MG MG B 814 1555 1555 2.13 LINK O3 PO4 B 800 MG MG B 814 1555 1555 2.07 LINK MG MG B 814 O HOH B1190 1555 1555 2.05 LINK MG MG B 814 O HOH B1209 1555 1555 2.17 CISPEP 1 LYS A 194 PRO A 195 0 2.56 CISPEP 2 LYS B 194 PRO B 195 0 1.48 SITE 1 AC1 6 ASP A 44 ASP A 46 ASP A 167 HOH A 995 SITE 2 AC1 6 HOH A1195 HOH A1204 SITE 1 AC2 6 ASP B 44 ASP B 46 ASP B 167 PO4 B 800 SITE 2 AC2 6 HOH B1190 HOH B1209 SITE 1 AC3 11 ASP B 44 ILE B 45 ASP B 46 THR B 112 SITE 2 AC3 11 GLY B 113 LYS B 152 DCZ B 801 MG B 814 SITE 3 AC3 11 HOH B 991 HOH B1190 HOH B1209 SITE 1 AC4 12 ASP B 46 PHE B 56 TYR B 70 GLY B 113 SITE 2 AC4 12 THR B 192 TYR B 193 PO4 B 800 HOH B 820 SITE 3 AC4 12 HOH B 843 HOH B 903 HOH B 953 HOH B 997 SITE 1 AC5 13 ASP A 46 PHE A 56 TYR A 70 TRP A 77 SITE 2 AC5 13 GLY A 113 ARG A 114 THR A 192 TYR A 193 SITE 3 AC5 13 HOH A 913 HOH A 992 HOH A1001 HOH A1006 SITE 4 AC5 13 HOH A1196 CRYST1 91.882 66.393 90.018 90.00 119.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010884 0.000000 0.006199 0.00000 SCALE2 0.000000 0.015062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012784 0.00000